Personal tools

MCL coexpression mm9:2191: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434704241352084,0.471715502659137,0.786839057846599,0.710270529589529,0.854129295610352,0.428403368412979,0,0,0,0,0,0,0,0,0,0,0.177278761328052,0,0,0,0,0,0,0,0,0,0.0586534975690397,0.137610809203654,0.0608675019052085,0.122764539441893,0.233050595075755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137740408373976,0,0.15255853577271,0,0,0,0,0.0142930472775233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.033080906512311,0,0.0338533374824575,0.0296301996785983,0.122145347181988,0.0789763647907279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239252087174131,0,0,0,0,0,0,0.0986943557653845,0,0,0,0,0.164276239518825,0,0.616023531266367,0.441903632363104,0,0,0,0,0,0,0,0.0387082368603573,0.0317858514275138,0,0.0321269055488328,0.0329509896628099,0,0.0586723554240733,0,0,0,0,0,0,0,0.457676397902923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116420155980149,0.0499142369709586,0.067332942735736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269929829543102,0.0607682443121235,0.0361136912019673,0,0.0330027737817202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.027471976078474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.054962990285351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10934038211141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0435794416222198,0,0,0,0.049058583180754,0,0.0537617699985205,0.0523284672130554,0.0236122972807905,0,0.0238095886952444,0,0,0.0596387295197733,0,0.0354759961767123,0.0464368173027965,0,0.0569785733435272,0.0352754493378881,0,0,0.0798283833100081,0,0.0486884105045233,0.0408018333703219,0,0.0625582350728301,0.0766064454112358,0,0,0.0845301845292944,0.108353055257316,0.0865703124974023,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434704241352084,0.471715502659137,0.786839057846599,0.710270529589529,0.854129295610352,0.428403368412979,0,0,0,0,0,0,0,0,0,0,0.177278761328052,0,0,0,0,0,0,0,0,0,0.0586534975690397,0.137610809203654,0.0608675019052085,0.122764539441893,0.233050595075755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137740408373976,0,0.15255853577271,0,0,0,0,0.0142930472775233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.033080906512311,0,0.0338533374824575,0.0296301996785983,0.122145347181988,0.0789763647907279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239252087174131,0,0,0,0,0,0,0.0986943557653845,0,0,0,0,0.164276239518825,0,0.616023531266367,0.441903632363104,0,0,0,0,0,0,0,0.0387082368603573,0.0317858514275138,0,0.0321269055488328,0.0329509896628099,0,0.0586723554240733,0,0,0,0,0,0,0,0.457676397902923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116420155980149,0.0499142369709586,0.067332942735736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269929829543102,0.0607682443121235,0.0361136912019673,0,0.0330027737817202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.027471976078474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.054962990285351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10934038211141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0435794416222198,0,0,0,0.049058583180754,0,0.0537617699985205,0.0523284672130554,0.0236122972807905,0,0.0238095886952444,0,0,0.0596387295197733,0,0.0354759961767123,0.0464368173027965,0,0.0569785733435272,0.0352754493378881,0,0,0.0798283833100081,0,0.0486884105045233,0.0408018333703219,0,0.0625582350728301,0.0766064454112358,0,0,0.0845301845292944,0.108353055257316,0.0865703124974023,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005418!8.19e-09!5;UBERON:0002472!8.19e-09!5;UBERON:0008784!8.19e-09!5;UBERON:0006058!8.19e-09!5;UBERON:0004709!8.19e-09!5;UBERON:0002529!8.19e-09!5;UBERON:0010538!8.19e-09!5;UBERON:0005420!8.19e-09!5;UBERON:0010758!8.19e-09!5;UBERON:0000978!8.19e-09!5;UBERON:0002103!8.19e-09!5;UBERON:0000376!8.19e-09!5;UBERON:0000154!8.19e-09!5;UBERON:0010709!8.19e-09!5;UBERON:0005730!8.19e-09!5;UBERON:0000981!3.39e-07!4;UBERON:0003608!3.39e-07!4;UBERON:0003826!3.39e-07!4;UBERON:0008202!3.39e-07!4;UBERON:0004381!3.39e-07!4;UBERON:0007273!3.39e-07!4;UBERON:0010912!3.39e-07!4;UBERON:0002513!3.39e-07!4;UBERON:0004375!3.39e-07!4;UBERON:0010740!3.39e-07!4;UBERON:0010363!3.39e-07!4;UBERON:0003860!3.39e-07!4;UBERON:0002428!3.39e-07!4;UBERON:0010742!3.39e-07!4;UBERON:0002495!3.39e-07!4;UBERON:0003464!3.39e-07!4;UBERON:0003606!3.39e-07!4;UBERON:0005893!3.39e-07!4;UBERON:0009749!3.39e-07!4;UBERON:0010712!3.39e-07!4;UBERON:0010886!3.39e-07!4;UBERON:0005254!3.39e-07!4;UBERON:0010885!3.39e-07!4;UBERON:0010881!3.39e-07!4;UBERON:0010882!3.39e-07!4;UBERON:0007844!3.39e-07!4;UBERON:0001441!3.39e-07!4;UBERON:0011249!3.39e-07!4;UBERON:0002091!3.39e-07!4;UBERON:0003285!3.39e-07!4;UBERON:0004288!3.39e-07!4;UBERON:0010129!3.39e-07!4;UBERON:0006234!3.39e-07!4
}}
}}

Revision as of 18:04, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr17:15569173..15569184,-p@chr17:15569173..15569184
-
Mm9::chr2:52228029..52228052,-p@chr2:52228029..52228052
-
Mm9::chr2:52228056..52228070,-p@chr2:52228056..52228070
-
Mm9::chr2:52228080..52228089,-p@chr2:52228080..52228089
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hindlimb bud8.19e-095
stylopod8.19e-095
lower limb segment8.19e-095
multi-limb segment region8.19e-095
pelvic appendage8.19e-095
limb segment8.19e-095
paired limb/fin segment8.19e-095
pelvic appendage bud8.19e-095
subdivision of organism along appendicular axis8.19e-095
leg8.19e-095
hindlimb8.19e-095
hindlimb stylopod8.19e-095
posterior region of body8.19e-095
pelvic complex8.19e-095
hindlimb/pelvic fin field8.19e-095
femur3.39e-074
hindlimb long bone3.39e-074
upper leg bone3.39e-074
bone of hip region3.39e-074
skeleton of limb3.39e-074
pelvic appendage skeleton3.39e-074
subdivision of skeleton3.39e-074
endochondral bone3.39e-074
bone of free limb or fin3.39e-074
bone of appendage girdle complex3.39e-074
endochondral element3.39e-074
hindlimb mesenchyme3.39e-074
limb bone3.39e-074
bone of pelvic complex3.39e-074
long bone3.39e-074
hindlimb bone3.39e-074
limb long bone3.39e-074
leg bone3.39e-074
limb mesenchyme3.39e-074
limb skeleton subdivision3.39e-074
hindlimb bone pre-cartilage condensation3.39e-074
upper leg mesenchyme3.39e-074
hindlimb cartilage element3.39e-074
limb cartilage element3.39e-074
limb bone pre-cartilage condensation3.39e-074
cartilage element3.39e-074
hindlimb skeleton3.39e-074
appendicular skeletal system3.39e-074
appendicular skeleton3.39e-074
limb of embryo3.39e-074
skeleton3.39e-074
femur cartilage element3.39e-074
femur pre-cartilage condensation3.39e-074


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:2191&oldid=2154390"