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MCL coexpression mm9:3647: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001041!6.53e-10!80;UBERON:0001048!7.57e-10!134;UBERON:0004119!5.21e-09!118;UBERON:0000925!5.21e-09!118;UBERON:0006595!5.21e-09!118;UBERON:0004921!1.33e-08!114;UBERON:0001007!1.53e-08!116;UBERON:0001555!1.53e-08!116;UBERON:0007026!1.53e-08!116;UBERON:0003081!6.87e-08!87;UBERON:0000926!8.07e-08!120;UBERON:0004120!8.07e-08!120;UBERON:0006603!8.07e-08!120;UBERON:0000475!1.14e-07!150;UBERON:0002368!1.29e-07!60;UBERON:0002530!1.31e-07!65;UBERON:0004177!1.43e-07!29;UBERON:0005057!1.43e-07!29;UBERON:0002193!1.47e-07!48;UBERON:0002405!1.47e-07!48;UBERON:0002390!2.40e-07!45;UBERON:0003061!2.40e-07!45;UBERON:0005172!2.67e-07!49;UBERON:0005173!2.67e-07!49;UBERON:0002417!2.67e-07!49;UBERON:0000916!2.67e-07!49;UBERON:0000949!9.50e-07!72;UBERON:0000077!9.69e-07!35
}}
}}

Revision as of 20:24, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr8:107824295..107824346,+p@chr8:107824295..107824346
+
Mm9::chr8:107828468..107828497,+p@chr8:107828468..107828497
+
Mm9::chr8:107828646..107828672,+p@chr8:107828646..107828672
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
foregut6.53e-1080
primordium7.57e-10134
endoderm-derived structure5.21e-09118
endoderm5.21e-09118
presumptive endoderm5.21e-09118
subdivision of digestive tract1.33e-08114
digestive system1.53e-08116
digestive tract1.53e-08116
primitive gut1.53e-08116
lateral plate mesoderm6.87e-0887
mesoderm8.07e-08120
mesoderm-derived structure8.07e-08120
presumptive mesoderm8.07e-08120
organism subdivision1.14e-07150
endocrine gland1.29e-0760
gland1.31e-0765
hemopoietic organ1.43e-0729
immune organ1.43e-0729
hemolymphoid system1.47e-0748
immune system1.47e-0748
hematopoietic system2.40e-0745
blood island2.40e-0745
abdomen element2.67e-0749
abdominal segment element2.67e-0749
abdominal segment of trunk2.67e-0749
abdomen2.67e-0749
endocrine system9.50e-0772
mixed endoderm/mesoderm-derived structure9.69e-0735


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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