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MCL coexpression mm9:115: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002390!9.10e-09!45;UBERON:0003061!9.10e-09!45;UBERON:0002193!3.96e-08!48;UBERON:0002405!3.96e-08!48;UBERON:0004177!7.89e-07!29;UBERON:0005057!7.89e-07!29
|ontology_enrichment_uberon=UBERON:0002390!9.10e-09!45;UBERON:0003061!9.10e-09!45;UBERON:0002193!3.96e-08!48;UBERON:0002405!3.96e-08!48;UBERON:0004177!7.89e-07!29;UBERON:0005057!7.89e-07!29
|tfbs_overrepresentation_for_novel_motifs=0.0459234,0.0434088,0.0321254,0.268181,0.347212,0.301322,0.0296991,0.172742,0.503689,0.0249971,0.0591347,0.176401,0.0739109,0.374986,1.15795,0,0.138706,0.582441,0.721683,0.170981,0.0438308,0.862089,0.00611584,0.469358,0.151231,0.440863,0.402606,0.352847,0.555926,0.0855064,0.703777,1.28472,0.21037,0.28734,0.0706621,0.00236506,0.0365628,0.077307,0.527362,0.00454753,0.975283,0.0992116,1.2134,0.126735,0.121384,0.243985,0.412035,0.394194,2.2227,0.571024,0.298443,0.147893,0.971674,0.386971,0.812497,0.0359216,1.27569,0.159671,0.131702,0.0352303,0.0571069,0.0588031,1.09612,0.28223,0.0398519,0.342464,0.206826,0.460491,0.44935,0.345232,0.111809,0.479749,5.52364e-07,0.14792,0.00307012,0.803332,0.212103,0.200512,0.192496,0.55517,0.941733,1.88411,1.50911,0.4012,0.0930797,6.54831e-06,0.0874592,0.764228,0.0876436,0.597592,0.251493,0.0951801,0.24068,0.104896,0.00023475,1.22704,0.235109,0.0691523,0.214692,0.647788,1.77172,0.492856,0.113863,0.5498,0.868023,0.00180613,0.0453559,0.120423,0.00680293,0.091188,0.170619,0.114695,0.269489,0.0622318,0.711793,0.144756,0.304939,0.276621,0.326387,0.174698,0.459797,0.253226,0.2566,0.199429,0.293465,0.19588,1.14535,0.233849,0.593973,0.109772,0.106094,0.584245,0.188091,0.0407769,0.270842,1.7675,1.17041,0.333924,0.669527,0.933644,0.569982,0.209732,1.39071,0.238316,1.22526,0.331552,0.684507,0.89632,0.203239,0.642223,0.059837,6.22372e-06,0.778185,0.434889,0.24129,0.496184,0.780266,0.473854,0.443446,0.00484836,0.244203,0.309145,0.434854,1.05077,0.524846,0.631473,0.0167075,1.03381,0.00726075
}}
}}

Revision as of 17:49, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:110597526..110597550,+p@chr10:110597526..110597550
+
Mm9::chr10:120073158..120073163,-p@chr10:120073158..120073163
-
Mm9::chr10:17492540..17492547,+p@chr10:17492540..17492547
+
Mm9::chr10:25015263..25015268,+p@chr10:25015263..25015268
+
Mm9::chr10:57910125..57910179,-p@chr10:57910125..57910179
-
Mm9::chr10:79487040..79487063,-p@chr10:79487040..79487063
-
Mm9::chr11:101488255..101488257,-p@chr11:101488255..101488257
-
Mm9::chr11:114821805..114821823,-p1@Cd300c
Mm9::chr11:59355156..59355168,+p@chr11:59355156..59355168
+
Mm9::chr11:62416683..62416694,+p@chr11:62416683..62416694
+
Mm9::chr11:72363697..72363708,-p@chr11:72363697..72363708
-
Mm9::chr11:72363732..72363746,-p1@Spns3
Mm9::chr11:75228608..75228620,-p6@Serpinf1
Mm9::chr11:97003596..97003600,-p@chr11:97003596..97003600
-
Mm9::chr12:106230793..106230804,+p@chr12:106230793..106230804
+
Mm9::chr12:70638828..70638838,-p@chr12:70638828..70638838
-
Mm9::chr13:37672927..37672979,+p@chr13:37672927..37672979
+
Mm9::chr13:37672985..37673013,+p@chr13:37672985..37673013
+
Mm9::chr13:55533619..55533626,-p@chr13:55533619..55533626
-
Mm9::chr13:56175406..56175420,-p@chr13:56175406..56175420
-
Mm9::chr13:56197535..56197550,-p@chr13:56197535..56197550
-
Mm9::chr13:56236833..56236869,-p1@H2afy
Mm9::chr13:56236990..56237016,-p5@H2afy
Mm9::chr13:56237017..56237029,-p10@H2afy
Mm9::chr13:56237037..56237049,-p8@H2afy
Mm9::chr13:56237145..56237171,-p6@H2afy
Mm9::chr13:56237198..56237209,-p16@H2afy
Mm9::chr13:56237261..56237276,-p7@H2afy
Mm9::chr13:64254437..64254453,-p4@Zfp367
Mm9::chr14:45660873..45660897,-p@chr14:45660873..45660897
-
Mm9::chr14:60888230..60888243,+p@chr14:60888230..60888243
+
Mm9::chr15:33980174..33980198,+p@chr15:33980174..33980198
+
Mm9::chr15:76029980..76029992,+p@chr15:76029980..76029992
+
Mm9::chr15:76030009..76030020,+p@chr15:76030009..76030020
+
Mm9::chr16:19760888..19760891,+p12@B3gnt5
Mm9::chr16:33787190..33787218,-p2@ENSMUST00000148293
p2@uc007zak.1
Mm9::chr16:92826080..92826091,-p@chr16:92826080..92826091
-
Mm9::chr16:94444596..94444600,-p@chr16:94444596..94444600
-
Mm9::chr17:24867833..24867848,+p@chr17:24867833..24867848
+
Mm9::chr17:45893571..45893577,-p@chr17:45893571..45893577
-
Mm9::chr17:45894898..45894908,-p@chr17:45894898..45894908
-
Mm9::chr17:88197369..88197389,-p2@Kcnk12
Mm9::chr18:15309185..15309190,+p@chr18:15309185..15309190
+
Mm9::chr18:15353713..15353758,+p@chr18:15353713..15353758
+
Mm9::chr19:35932869..35932871,-p@chr19:35932869..35932871
-
Mm9::chr19:47653901..47653915,+p7@Slk
Mm9::chr19:8797434..8797452,+p@chr19:8797434..8797452
+
Mm9::chr1:133656896..133656904,+p@chr1:133656896..133656904
+
Mm9::chr1:156907074..156907076,+p@chr1:156907074..156907076
+
Mm9::chr1:175357740..175357744,+p@chr1:175357740..175357744
+
Mm9::chr1:184452543..184452546,+p@chr1:184452543..184452546
+
Mm9::chr2:148265887..148265889,+p@chr2:148265887..148265889
+
Mm9::chr2:30775800..30775825,-p@chr2:30775800..30775825
-
Mm9::chr2:90926564..90926594,-p@chr2:90926564..90926594
-
Mm9::chr3:135271185..135271254,-p4@Nfkb1
Mm9::chr3:137644447..137644458,-p4@Dapp1
Mm9::chr3:142680086..142680112,+p@chr3:142680086..142680112
+
Mm9::chr3:20142057..20142066,-p@chr3:20142057..20142066
-
Mm9::chr3:78965567..78965595,+p@chr3:78965567..78965595
+
Mm9::chr4:114735446..114735466,+p@chr4:114735446..114735466
+
Mm9::chr4:140255558..140255565,-p@chr4:140255558..140255565
-
Mm9::chr5:105418368..105418390,-p1@ENSMUST00000062467
Mm9::chr5:109976346..109976355,+p@chr5:109976346..109976355
+
Mm9::chr5:121010361..121010381,-p4@Tpcn1
Mm9::chr5:121010382..121010411,-p3@Tpcn1
Mm9::chr5:132734904..132734922,-p@chr5:132734904..132734922
-
Mm9::chr5:134704120..134704134,-p2@Ncf1
Mm9::chr5:138668608..138668646,-p@chr5:138668608..138668646
-
Mm9::chr5:22056068..22056079,-p2@Orc5
Mm9::chr5:3342403..3342410,-p@chr5:3342403..3342410
-
Mm9::chr5:3343907..3343945,+p1@Cdk6
Mm9::chr5:3522260..3522265,+p1@uc008wgw.1
Mm9::chr6:128840977..128840980,-p1@uc009eet.1
Mm9::chr6:128841123..128841196,-p1@BC035044
Mm9::chr6:128964124..128964132,+p@chr6:128964124..128964132
+
Mm9::chr6:28347999..28348023,-p3@Zfp800
Mm9::chr6:88116155..88116166,-p@chr6:88116155..88116166
-
Mm9::chr7:152296622..152296624,-p@chr7:152296622..152296624
-
Mm9::chr7:20462508..20462510,+p@chr7:20462508..20462510
+
Mm9::chr7:31822900..31822909,-p@chr7:31822900..31822909
-
Mm9::chr7:53176481..53176497,-p7@Emp3
Mm9::chr8:108530998..108531010,-p@chr8:108530998..108531010
-
Mm9::chr8:124880136..124880145,+p@chr8:124880136..124880145
+
Mm9::chr8:87509236..87509243,-p@chr8:87509236..87509243
-
Mm9::chr8:97544125..97544128,-p@chr8:97544125..97544128
-
Mm9::chr8:97544689..97544719,+p@chr8:97544689..97544719
+
Mm9::chr8:97544724..97544745,+p@chr8:97544724..97544745
+
Mm9::chr8:97573897..97573901,+p@chr8:97573897..97573901
+
Mm9::chr9:114684499..114684510,-p@chr9:114684499..114684510
-
Mm9::chr9:114684532..114684543,-p@chr9:114684532..114684543
-
Mm9::chr9:114684544..114684555,-p@chr9:114684544..114684555
-
Mm9::chr9:114684561..114684576,-p@chr9:114684561..114684576
-
Mm9::chr9:114684581..114684601,-p@chr9:114684581..114684601
-
Mm9::chr9:114684606..114684620,-p@chr9:114684606..114684620
-
Mm9::chr9:114691063..114691074,-p3@Cmtm7
Mm9::chr9:114691104..114691116,-p2@Cmtm7
Mm9::chr9:20935605..20935612,-p@chr9:20935605..20935612
-
Mm9::chr9:88275022..88275026,-p@chr9:88275022..88275026
-
Mm9::chr9:88275046..88275071,-p@chr9:88275046..88275071
-
Mm9::chr9:88275082..88275100,-p@chr9:88275082..88275100
-
Mm9::chrX:131076386..131076439,-p1@Timm8a1
Mm9::chrX:166434996..166435008,+p@chrX:166434996..166435008
+
Mm9::chrX:18744363..18744370,-p1@ENSMUST00000150801
p1@uc009ssq.1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hematopoietic system9.10e-0945
blood island9.10e-0945
hemolymphoid system3.96e-0848
immune system3.96e-0848
hemopoietic organ7.89e-0729
immune organ7.89e-0729


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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