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MCL coexpression mm9:1162: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004119!9.07e-20!118;UBERON:0000925!9.07e-20!118;UBERON:0006595!9.07e-20!118;UBERON:0001007!2.09e-19!116;UBERON:0001555!2.09e-19!116;UBERON:0007026!2.09e-19!116;UBERON:0004921!5.35e-19!114;UBERON:0001041!2.20e-13!80;UBERON:0005911!1.26e-12!69;UBERON:0003929!1.36e-09!55;UBERON:0000490!2.47e-08!66;UBERON:0000475!1.18e-07!150;UBERON:0005409!1.71e-07!47;UBERON:0000077!2.50e-07!35;UBERON:0004177!7.76e-07!29;UBERON:0005057!7.76e-07!29
|ontology_enrichment_uberon=UBERON:0004119!9.07e-20!118;UBERON:0000925!9.07e-20!118;UBERON:0006595!9.07e-20!118;UBERON:0001007!2.09e-19!116;UBERON:0001555!2.09e-19!116;UBERON:0007026!2.09e-19!116;UBERON:0004921!5.35e-19!114;UBERON:0001041!2.20e-13!80;UBERON:0005911!1.26e-12!69;UBERON:0003929!1.36e-09!55;UBERON:0000490!2.47e-08!66;UBERON:0000475!1.18e-07!150;UBERON:0005409!1.71e-07!47;UBERON:0000077!2.50e-07!35;UBERON:0004177!7.76e-07!29;UBERON:0005057!7.76e-07!29
|tfbs_overrepresentation_for_novel_motifs=0.438063,1.02534,0.411716,0.480627,0.299217,0.495263,0.587291,0.594722,1.15776,1.25386,0.542749,0.575086,0.59526,0.599731,0.315771,0,0.795315,0.291368,0.561256,0.112498,0.374752,0.27937,0.598814,0.29769,0.419327,0.62766,0.542568,0.516511,0.911169,0.446946,1.25421,0.897561,0.78719,0.166577,0.316253,3.01978,1.40094,0.57142,0.258564,1.89251,0.295233,0.507468,0.258106,0.317766,0.822425,0.469348,0.714592,0.532496,0.0609361,0.347313,0.777641,0.654933,0.139618,1.04034,1.0579,0.606984,0.937475,0.56214,0.176152,0.604914,0.877332,0.664501,0.642748,0.766235,0.618279,0.807219,1.19497,1.54543,0.872612,1.39786,1.01778,0.21183,1.52206,1.09164,0.507615,0.482617,0.166511,0.703064,0.859987,0.378988,0.212973,0.812889,0.663039,0.200155,0.975495,2.93639,0.374181,3.48497,0.719558,1.70793,1.26498,0.980512,0.910485,0.305079,0.708155,0.237542,0.589174,0.913319,0.71485,3.25743,0.7665,0.897279,1.02279,0.778243,0.777175,0.507021,0.837607,0.528416,0.383871,0.982279,0.430942,1.02459,0.990132,0.547992,1.27206,0.293461,0.418498,0.484437,0.796633,0.276329,1.09707,0.745011,0.629509,0.702145,1.32639,0.863723,0.595563,0.903645,1.19345,0.308038,1.00568,0.473246,1.16374,0.620831,1.29374,0.580299,0.446555,0.508896,1.24438,2.07659,1.67603,1.19971,0.641722,0.908128,0.770616,0.507927,0.717753,2.03691,0.448938,0.300961,0.452587,1.92168,1.04192,0.681896,0.619892,1.12411,0.655955,0.874089,0.435579,1.13413,1.25393,0.974632,0.864173,0.428662,0.767269,0.612377,0.278874,0.573477,1.86859
}}
}}

Revision as of 19:29, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr17:88840054..88840081,+p2@Foxn2
Mm9::chr2:72817045..72817123,-p1@Sp3
Mm9::chr3:105604217..105604233,-p2@Rap1a
Mm9::chr3:105604241..105604295,-p1@Rap1a
Mm9::chr4:59562147..59562175,-p1@Rod1
Mm9::chr6:72297295..72297373,+p1@0610030E20Rik
Mm9::chrX:39503849..39503898,+p1@Stag2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
endoderm-derived structure9.07e-20118
endoderm9.07e-20118
presumptive endoderm9.07e-20118
digestive system2.09e-19116
digestive tract2.09e-19116
primitive gut2.09e-19116
subdivision of digestive tract5.35e-19114
foregut2.20e-1380
endo-epithelium1.26e-1269
gut epithelium1.36e-0955
unilaminar epithelium2.47e-0866
organism subdivision1.18e-07150
gastrointestinal system1.71e-0747
mixed endoderm/mesoderm-derived structure2.50e-0735
hemopoietic organ7.76e-0729
immune organ7.76e-0729


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}