FFCP PHASE1:Mm9::chr3:66785511..66785534,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20429|HGNC=|UniProt=P70390|association_with_transcript=158bp_to_ENSMUST00000029422,NM_013665,uc008pld.1,uc008ple.1_5end|description=CAGE_peak_5_at_Shox2_5end|id=chr3:66785511..66785534,-|ontology_enrichment_celltype=CL:0000117!2.31e-08!23;CL:0000337!2.31e-08!23|ontology_enrichment_celltype_v019_2=CL:0002613,7.15e-17,3;CL:0000117,4.88e-11,23;CL:0000337,4.88e-11,23;CL:0000120,1.10e-08,3;CL:0002610,7.57e-08,3;CL:0000540,1.69e-07,33;CL:0000047,1.69e-07,33;CL:0000031,1.69e-07,33;CL:0000404,1.69e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002102!5.58e-07!8;UBERON:0004710!5.58e-07!8;UBERON:0005419!5.58e-07!8;UBERON:0005417!5.58e-07!8;UBERON:0005729!5.58e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0002102,1.79e-13,7;UBERON:0004710,1.79e-13,7;UBERON:0005419,1.79e-13,7;UBERON:0005417,1.79e-13,7;UBERON:0005729,1.79e-13,7;UBERON:0010708,8.12e-12,8;UBERON:0000369,2.33e-10,5;UBERON:0002435,2.33e-10,5;UBERON:0000204,2.33e-10,5;UBERON:0010082,2.33e-10,5;UBERON:0000026,6.23e-08,12;UBERON:0004708,6.23e-08,12;UBERON:0002101,6.23e-08,12;UBERON:0004357,6.23e-08,12;UBERON:0004347,6.23e-08,12;UBERON:0005732,6.23e-08,12;UBERON:0005733,6.23e-08,12;UBERON:0004684,7.57e-08,3;UBERON:0002275,7.57e-08,3;UBERON:0010707,2.48e-07,13|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.04632921719196,0.528990979272033,3.80298842103708,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0.883474163806454,0,0,0,1.10115880999389,1.14918604276669,0.46081959976873,1.31886287730194,1.9212405156506,1.56274011167028,0,0,0,0,0.142371680799103,0.931997229126503,0,0,0,0,0,0,0,0,0,0.170430322578058,0.259786004602869,0,0,1.28326477414318,0,0,0,0,0,0,0,0,0,0.608930956624282,0,0.301445281105245,0,0,0,0,0,0.647067399789637,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0,0,0,1.45451631191692,0.811206315338788,0,0.124406970610093,0,0,0.130120442962704,0,0,0.452114453507145,0.204109497453984,0,0,0,9.48499168904506,9.45530400839096,2.99116911078713,0.876782929710299,2.22437799380478,0,0.411564272815887,0,0,0,0,0.414251545071004,0.469052119962192,0.36012412292203,0,0,0.154267112887378,0.232533944750408,0,0,0,0.164167464079095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0.491804836130026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94391920819871,3.59122386060928,1.70733605754134,0,0.209613162627982,0.735374033800057,0.222246727801615,0.412070114477788,0.320919209591815,0,0.25347929989024,0,0.187283014939765,0.256100609619477,0.34461281373368,0,0.115884325944855,0.192909220463705,0.412085900803307,0,0.685738504770831,0.70990322463735,0.238436189947321,0.581385666529314,0.188218760830661,0.0846146078916765,0,0.263069711437843,0,0,0.118635018124174,0.197008964751127,0,0,0.385813221962283,0,0.233931608445408,0.429742108096597,0,0,0|short_description=p5@Shox2}} | ||
|EntrezGene=20429 | |||
|HGNC= | |||
|UniProt=P70390 | |||
|association_with_transcript=158bp_to_ENSMUST00000029422,NM_013665,uc008pld.1,uc008ple.1_5end | |||
|description=CAGE_peak_5_at_Shox2_5end | |||
|id=chr3:66785511..66785534,- | |||
|ontology_enrichment_celltype=CL:0000117!2.31e-08!23;CL:0000337!2.31e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002613,7.15e-17,3;CL:0000117,4.88e-11,23;CL:0000337,4.88e-11,23;CL:0000120,1.10e-08,3;CL:0002610,7.57e-08,3;CL:0000540,1.69e-07,33;CL:0000047,1.69e-07,33;CL:0000031,1.69e-07,33;CL:0000404,1.69e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002102!5.58e-07!8;UBERON:0004710!5.58e-07!8;UBERON:0005419!5.58e-07!8;UBERON:0005417!5.58e-07!8;UBERON:0005729!5.58e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002102,1.79e-13,7;UBERON:0004710,1.79e-13,7;UBERON:0005419,1.79e-13,7;UBERON:0005417,1.79e-13,7;UBERON:0005729,1.79e-13,7;UBERON:0010708,8.12e-12,8;UBERON:0000369,2.33e-10,5;UBERON:0002435,2.33e-10,5;UBERON:0000204,2.33e-10,5;UBERON:0010082,2.33e-10,5;UBERON:0000026,6.23e-08,12;UBERON:0004708,6.23e-08,12;UBERON:0002101,6.23e-08,12;UBERON:0004357,6.23e-08,12;UBERON:0004347,6.23e-08,12;UBERON:0005732,6.23e-08,12;UBERON:0005733,6.23e-08,12;UBERON:0004684,7.57e-08,3;UBERON:0002275,7.57e-08,3;UBERON:0010707,2.48e-07,13 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.04632921719196,0.528990979272033,3.80298842103708,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0.883474163806454,0,0,0,1.10115880999389,1.14918604276669,0.46081959976873,1.31886287730194,1.9212405156506,1.56274011167028,0,0,0,0,0.142371680799103,0.931997229126503,0,0,0,0,0,0,0,0,0,0.170430322578058,0.259786004602869,0,0,1.28326477414318,0,0,0,0,0,0,0,0,0,0.608930956624282,0,0.301445281105245,0,0,0,0,0,0.647067399789637,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0,0,0,1.45451631191692,0.811206315338788,0,0.124406970610093,0,0,0.130120442962704,0,0,0.452114453507145,0.204109497453984,0,0,0,9.48499168904506,9.45530400839096,2.99116911078713,0.876782929710299,2.22437799380478,0,0.411564272815887,0,0,0,0,0.414251545071004,0.469052119962192,0.36012412292203,0,0,0.154267112887378,0.232533944750408,0,0,0,0.164167464079095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0.491804836130026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94391920819871,3.59122386060928,1.70733605754134,0,0.209613162627982,0.735374033800057,0.222246727801615,0.412070114477788,0.320919209591815,0,0.25347929989024,0,0.187283014939765,0.256100609619477,0.34461281373368,0,0.115884325944855,0.192909220463705,0.412085900803307,0,0.685738504770831,0.70990322463735,0.238436189947321,0.581385666529314,0.188218760830661,0.0846146078916765,0,0.263069711437843,0,0,0.118635018124174,0.197008964751127,0,0,0.385813221962283,0,0.233931608445408,0.429742108096597,0,0,0 | |||
|short_description=p5@Shox2 | |||
}} |
Revision as of 02:27, 14 September 2013
Short description: | p5@Shox2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Shox2_5end |
Coexpression cluster: | NA |
Association with transcript: | 158bp_to_ENSMUST00000029422, NM_013665, uc008pld.1, uc008ple.1_5end |
EntrezGene: | Shox2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
striatum neuron | 7.15e-17 | 3 |
CNS neuron (sensu Vertebrata) | 4.88e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.88e-11 | 23 |
granule cell | 1.10e-08 | 3 |
raphe nuclei neuron | 7.57e-08 | 3 |
neuron | 1.69e-07 | 33 |
neuronal stem cell | 1.69e-07 | 33 |
neuroblast | 1.69e-07 | 33 |
electrically signaling cell | 1.69e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
forelimb | 1.79e-13 | 7 |
pectoral appendage | 1.79e-13 | 7 |
pectoral appendage bud | 1.79e-13 | 7 |
forelimb bud | 1.79e-13 | 7 |
forelimb/pectoral fin field | 1.79e-13 | 7 |
pectoral complex | 8.12e-12 | 8 |
corpus striatum | 2.33e-10 | 5 |
striatum | 2.33e-10 | 5 |
ventral part of telencephalon | 2.33e-10 | 5 |
future corpus striatum | 2.33e-10 | 5 |
appendage | 6.23e-08 | 12 |
paired limb/fin | 6.23e-08 | 12 |
limb | 6.23e-08 | 12 |
paired limb/fin bud | 6.23e-08 | 12 |
limb bud | 6.23e-08 | 12 |
limb/fin field | 6.23e-08 | 12 |
limb field | 6.23e-08 | 12 |
raphe nuclei | 7.57e-08 | 3 |
reticular formation | 7.57e-08 | 3 |
appendage girdle complex | 2.48e-07 | 13 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.