FFCP PHASE1:Mm9::chr19:4059077..4059099,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:4059077..4059099,-|id=chr19:4059077..4059099,-|ontology_enrichment_celltype=CL:0002563!1.30e-07!9;CL:0002251!1.30e-07!9;CL:0000239!8.39e-07!6;CL:0000677!8.39e-07!6;CL:0000212!8.39e-07!6;CL:0000584!8.39e-07!6|ontology_enrichment_celltype_v019_2=CL:0000239,1.80e-16,6;CL:0000677,1.80e-16,6;CL:0000584,1.80e-16,6;CL:0000075,5.00e-14,7;CL:0002563,9.17e-11,9;CL:0002251,9.17e-11,9;CL:0000682,5.81e-10,3;CL:0000066,7.58e-10,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001007!1.09e-17!128;UBERON:0001555!1.09e-17!128;UBERON:0007026!1.09e-17!128;UBERON:0004119!4.84e-17!130;UBERON:0000925!4.84e-17!130;UBERON:0006595!4.84e-17!130;UBERON:0004921!3.67e-16!126;UBERON:0004185!3.67e-16!126;UBERON:0003929!1.15e-12!55;UBERON:0000344!2.88e-12!15;UBERON:0004923!2.95e-12!24;UBERON:0005409!2.05e-10!59;UBERON:0001242!2.89e-10!13;UBERON:0000060!2.89e-10!13;UBERON:0001262!2.89e-10!13;UBERON:0004786!2.89e-10!13;UBERON:0005057!1.55e-09!51;UBERON:0005911!2.07e-09!69;UBERON:0000160!2.18e-09!43;UBERON:0000490!1.59e-08!66;UBERON:0002405!2.85e-08!70;UBERON:0003350!1.30e-07!9;UBERON:0004808!1.30e-07!9;UBERON:0001277!1.30e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.97e-19,31;UBERON:0000344,1.76e-17,15;UBERON:0004923,9.46e-15,24;UBERON:0005409,3.89e-13,47;UBERON:0001242,1.11e-12,13;UBERON:0001262,1.11e-12,13;UBERON:0004786,1.11e-12,13;UBERON:0003350,9.17e-11,9;UBERON:0004808,9.17e-11,9;UBERON:0001277,9.17e-11,9;UBERON:0002465,1.12e-09,3;UBERON:0001007,1.17e-09,116;UBERON:0001555,1.17e-09,116;UBERON:0007026,1.17e-09,116;UBERON:0004119,2.10e-09,118;UBERON:0000925,2.10e-09,118;UBERON:0006595,2.10e-09,118;UBERON:0000485,1.10e-08,11;UBERON:0004921,9.48e-08,114;UBERON:0001962,2.29e-07,2;UBERON:0001961,2.29e-07,2;UBERON:0001744,2.29e-07,2;UBERON:0002108,7.21e-07,4|phase1_expression=0,23.0323769041978,27.7549536027617,1.20985684522732,1.00179145989269,11.0800319461847,16.5864974822823,0.516493293766305,0.140788722151667,0,1.02730780935303,0.638177271962691,0.684802919724823,0.611942816932982,0,0.607425802169478,0,0,0.137114433605739,0,0,0,0,34.5583633233758,31.4290715062023,23.5435105287158,24.9841957772263,29.7350301106527,1.71021077510736,0.504060259519861,11.9734475753865,2.54012269383853,1.84519436275371,0,0.288851619751275,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,23.1190253460635,0.539703191637817,0,0,0.140444420131752,0,0,0,0,0,0,0,0.216491041011214,0,0,0.22836775943812,1.8125651855302,0,0,0,0,0,0,0,4.44950941921873,0,0,0.161766849947409,0,0,0,0,0,1.27728527604296,0,0,0.127070227073065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348252166522167,0,0,0.702213187313235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,1.05780226665418,0,0,0,0.605050573870028,1.11189021922435,3.04361001780095,0.474529061544512,0.823494773620054,1.50801125280162,2.58643413653496,4.67913809085888,0.898819408654221,0.864552199498777,0.597423819763102,0,0,0,0,0.193952487167626,0,0,0,0,0,0,0.166845105716094,0,0.449724224769707,0.405720242777006,2.17059443777175,2.03700681425136,1.43848068725405,0.486405680325106,0.823684239564244,0,1.48856379067401,0.624075346229121,0.252578877947112,0.358794827043824,0,0.369506380333209,0,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62332752966866,0,0.341741761595705,0,0.185194527369712,1.31857919903284,0.27338845544205,0.228778173206523,0,0.279902904647316,0,0,0,0.203319467126849,0,0.209088296014469,0,0.134864346384821,0.41326727862668,0,0.129614973291793,0.621339313086926,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0.316011120628178,0,0,0.129920822977795,0.358053391334963,0.79472541912506,0,0.295379054349154,0,0.0762068066549998,0.100826185136841,0.292373642219257,0.288635524920988,0.350630706544707,0,0.221985953374065,0.0897138566094757,0,0,0,0.549454872801795,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486213434136588,0,0,0,0.206035057238894,0.64183841918363,0,0,0.188626341386076,0.280924522409647,0.256100609619477,0,0,0.115884325944855,0,0,0.441596760403192,1.02860775715625,0.532427418478012,0,0.290692833264657,0.0941093804153306,0.423073039458382,0.182927972872773,0,0.407412341537585,0,0,0.0985044823755635,0.818462086339379,0.154936841185966,0.192906610981141,0.499621155875892,0,0,0.191288332068843,0.220591419119515,0|short_description=p@chr19:4059077..4059099,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:4059077..4059099,- | |||
|id=chr19:4059077..4059099,- | |||
|ontology_enrichment_celltype=CL:0002563!1.30e-07!9;CL:0002251!1.30e-07!9;CL:0000239!8.39e-07!6;CL:0000677!8.39e-07!6;CL:0000212!8.39e-07!6;CL:0000584!8.39e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.80e-16,6;CL:0000677,1.80e-16,6;CL:0000584,1.80e-16,6;CL:0000075,5.00e-14,7;CL:0002563,9.17e-11,9;CL:0002251,9.17e-11,9;CL:0000682,5.81e-10,3;CL:0000066,7.58e-10,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!1.09e-17!128;UBERON:0001555!1.09e-17!128;UBERON:0007026!1.09e-17!128;UBERON:0004119!4.84e-17!130;UBERON:0000925!4.84e-17!130;UBERON:0006595!4.84e-17!130;UBERON:0004921!3.67e-16!126;UBERON:0004185!3.67e-16!126;UBERON:0003929!1.15e-12!55;UBERON:0000344!2.88e-12!15;UBERON:0004923!2.95e-12!24;UBERON:0005409!2.05e-10!59;UBERON:0001242!2.89e-10!13;UBERON:0000060!2.89e-10!13;UBERON:0001262!2.89e-10!13;UBERON:0004786!2.89e-10!13;UBERON:0005057!1.55e-09!51;UBERON:0005911!2.07e-09!69;UBERON:0000160!2.18e-09!43;UBERON:0000490!1.59e-08!66;UBERON:0002405!2.85e-08!70;UBERON:0003350!1.30e-07!9;UBERON:0004808!1.30e-07!9;UBERON:0001277!1.30e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.97e-19,31;UBERON:0000344,1.76e-17,15;UBERON:0004923,9.46e-15,24;UBERON:0005409,3.89e-13,47;UBERON:0001242,1.11e-12,13;UBERON:0001262,1.11e-12,13;UBERON:0004786,1.11e-12,13;UBERON:0003350,9.17e-11,9;UBERON:0004808,9.17e-11,9;UBERON:0001277,9.17e-11,9;UBERON:0002465,1.12e-09,3;UBERON:0001007,1.17e-09,116;UBERON:0001555,1.17e-09,116;UBERON:0007026,1.17e-09,116;UBERON:0004119,2.10e-09,118;UBERON:0000925,2.10e-09,118;UBERON:0006595,2.10e-09,118;UBERON:0000485,1.10e-08,11;UBERON:0004921,9.48e-08,114;UBERON:0001962,2.29e-07,2;UBERON:0001961,2.29e-07,2;UBERON:0001744,2.29e-07,2;UBERON:0002108,7.21e-07,4 | |||
|phase1_expression=0,23.0323769041978,27.7549536027617,1.20985684522732,1.00179145989269,11.0800319461847,16.5864974822823,0.516493293766305,0.140788722151667,0,1.02730780935303,0.638177271962691,0.684802919724823,0.611942816932982,0,0.607425802169478,0,0,0.137114433605739,0,0,0,0,34.5583633233758,31.4290715062023,23.5435105287158,24.9841957772263,29.7350301106527,1.71021077510736,0.504060259519861,11.9734475753865,2.54012269383853,1.84519436275371,0,0.288851619751275,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,23.1190253460635,0.539703191637817,0,0,0.140444420131752,0,0,0,0,0,0,0,0.216491041011214,0,0,0.22836775943812,1.8125651855302,0,0,0,0,0,0,0,4.44950941921873,0,0,0.161766849947409,0,0,0,0,0,1.27728527604296,0,0,0.127070227073065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348252166522167,0,0,0.702213187313235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,1.05780226665418,0,0,0,0.605050573870028,1.11189021922435,3.04361001780095,0.474529061544512,0.823494773620054,1.50801125280162,2.58643413653496,4.67913809085888,0.898819408654221,0.864552199498777,0.597423819763102,0,0,0,0,0.193952487167626,0,0,0,0,0,0,0.166845105716094,0,0.449724224769707,0.405720242777006,2.17059443777175,2.03700681425136,1.43848068725405,0.486405680325106,0.823684239564244,0,1.48856379067401,0.624075346229121,0.252578877947112,0.358794827043824,0,0.369506380333209,0,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62332752966866,0,0.341741761595705,0,0.185194527369712,1.31857919903284,0.27338845544205,0.228778173206523,0,0.279902904647316,0,0,0,0.203319467126849,0,0.209088296014469,0,0.134864346384821,0.41326727862668,0,0.129614973291793,0.621339313086926,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0.316011120628178,0,0,0.129920822977795,0.358053391334963,0.79472541912506,0,0.295379054349154,0,0.0762068066549998,0.100826185136841,0.292373642219257,0.288635524920988,0.350630706544707,0,0.221985953374065,0.0897138566094757,0,0,0,0.549454872801795,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486213434136588,0,0,0,0.206035057238894,0.64183841918363,0,0,0.188626341386076,0.280924522409647,0.256100609619477,0,0,0.115884325944855,0,0,0.441596760403192,1.02860775715625,0.532427418478012,0,0.290692833264657,0.0941093804153306,0.423073039458382,0.182927972872773,0,0.407412341537585,0,0,0.0985044823755635,0.818462086339379,0.154936841185966,0.192906610981141,0.499621155875892,0,0,0.191288332068843,0.220591419119515,0 | |||
|short_description=p@chr19:4059077..4059099,- | |||
}} |
Revision as of 17:34, 13 September 2013
Short description: | p@chr19:4059077..4059099, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:4059077..4059099, - |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.80e-16 | 6 |
gut absorptive cell | 1.80e-16 | 6 |
enterocyte | 1.80e-16 | 6 |
columnar/cuboidal epithelial cell | 5.00e-14 | 7 |
intestinal epithelial cell | 9.17e-11 | 9 |
epithelial cell of alimentary canal | 9.17e-11 | 9 |
M cell of gut | 5.81e-10 | 3 |
epithelial cell | 7.58e-10 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.97e-19 | 31 |
mucosa | 1.76e-17 | 15 |
organ component layer | 9.46e-15 | 24 |
gastrointestinal system | 3.89e-13 | 47 |
intestinal mucosa | 1.11e-12 | 13 |
wall of intestine | 1.11e-12 | 13 |
gastrointestinal system mucosa | 1.11e-12 | 13 |
epithelium of mucosa | 9.17e-11 | 9 |
gastrointestinal system epithelium | 9.17e-11 | 9 |
intestinal epithelium | 9.17e-11 | 9 |
lymphoid system | 1.12e-09 | 3 |
digestive system | 1.17e-09 | 116 |
digestive tract | 1.17e-09 | 116 |
primitive gut | 1.17e-09 | 116 |
endoderm-derived structure | 2.10e-09 | 118 |
endoderm | 2.10e-09 | 118 |
presumptive endoderm | 2.10e-09 | 118 |
simple columnar epithelium | 1.10e-08 | 11 |
subdivision of digestive tract | 9.48e-08 | 114 |
gut-associated lymphoid tissue | 2.29e-07 | 2 |
mucosa-associated lymphoid tissue | 2.29e-07 | 2 |
lymphoid tissue | 2.29e-07 | 2 |
small intestine | 7.21e-07 | 4 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.