FFCP PHASE1:Mm9::chr4:140980608..140980620,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=19|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:140980608..140980620,+|id=chr4:140980608..140980620,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002494,6.30e-09,3;CL:0000737,6.30e-09,3;CL:0000746,6.30e-09,3;CL:0000513,6.30e-09,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007100!8.07e-18!18;UBERON:0000948!8.07e-18!18;UBERON:0005498!8.07e-18!18;UBERON:0004140!8.07e-18!18;UBERON:0009881!8.07e-18!18;UBERON:0004141!8.07e-18!18;UBERON:0003084!8.07e-18!18;UBERON:0007005!8.07e-18!18;UBERON:0004139!8.07e-18!18;UBERON:0004291!8.07e-18!18;UBERON:0004535!8.11e-14!23;UBERON:0001009!8.11e-14!23;UBERON:0004872!2.52e-11!33;UBERON:0003103!2.36e-07!43|ontology_enrichment_uberon_v019_2=UBERON:0007100,3.52e-52,18;UBERON:0000948,3.52e-52,18;UBERON:0005498,3.52e-52,18;UBERON:0004140,3.52e-52,18;UBERON:0009881,3.52e-52,18;UBERON:0004141,3.52e-52,18;UBERON:0003084,3.52e-52,18;UBERON:0007005,3.52e-52,18;UBERON:0004139,3.52e-52,18;UBERON:0004291,3.52e-52,18;UBERON:0004535,2.63e-44,23;UBERON:0001009,2.63e-44,23;UBERON:0004872,1.25e-29,33;UBERON:0003103,5.60e-22,43;UBERON:0003914,1.45e-19,47;UBERON:0003081,2.15e-12,87;UBERON:0000926,1.26e-08,120;UBERON:0004120,1.26e-08,120;UBERON:0006603,1.26e-08,120;UBERON:0010314,4.60e-08,92|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.58328969722285,0.139986421625363,0,0,0,0,1.80081605225163,2.29226751951005,2.06268836910977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227178579999552,0.0755715601067855,0,0,0,0,0,0,1.12355536105401,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0.23517741427141,0.125666591329675,0.247194967734374,1.01219549843938,0,2.58826959915855,2.65009822152472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0.124406970610093,0,0,0,0,0.360124259610698,0.452114453507145,0.136072998302656,0.2562274405697,0,0.517406741478031,0,0,0,0,0,0.696504333044333,0,0,0,0,0,5.38527008592305,4.92504725960302,6.48223421259654,8.52281048106757,5.90292695242211,11.5700334665534,17.9051137457814,9.65784245038629,10.6256461554124,11.5191894939436,30.0426459264744,8.59329381186071,2.04679982395465,11.8557062257167,6.57611451925822,0,0,0,0,0,0,0.257734922644187,0.201683524623343,0.22237804384487,0.380451252225118,0,0.164698954724011,0,0.198956472041151,0,0,0.432276099749388,0.199141273254367,0,0,0,0.203651327845314,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488894929326078,0.169745085775188,0,0,0,0.585400943573396,0.472905432318573,0,0.159454768657487,0.163863314715738,0,0.289298117163023,0,0,0,0,0,0,0,2.52470927204373,0,0,0,0,0,0,0.404810701674894,0,0,0,0.141940085208269,0.35613120733451,0.162886959353576,0.824850614862677,0,0,0.302323556964751,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0.178368817602071,0,0,0.938686832254841,0.21183207086382,0.220528398054962,0.16488625294148,0.484393280087717,0.180938774784468,0,0.164140899745061,0,0,0,0,0,0,0.136694227721025,0,0,0,0,0.954670618015114,0,0.609958401380546,0,0.418176592028937,0,0.269728692769641,0.0826534557253359,0,0.518459893167171,0,1.69107881605257,0,0,0,0,0.337912250981556,0,0,0,0,0.288030006257865,0,0,0,0.129920822977795,0,0.198681354781265,0.120195449519969,0.147689527174577,0,0,0,0,0,0,3.17422537061296,0,0,0,0.386379188064381,0.187682475451182,0,0.214368379079066,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0,0.44449345560323,0.412070114477788,0.64183841918363,0.252697211763798,0.50695859978048,0.943131706930381,0.187283014939765,0.256100609619477,0.402048282689293,0.952587382566147,0.347652977834566,0.77163688185482,1.64834360321323,0.588795680537589,0.342869252385415,0.887379030796687,0.715308569841963,0.436039249896986,0.564656282491984,0.169229215783353,0.914639864363863,2.10455769150274,0.135804113845862,1.12228454331548,0.593175090620871,0.985044823755635,1.22769312950907,0.154936841185966,0.192906610981141,1.24905288968973,0.233931608445408,0.214871054048298,2.29545998482612,0.882365676478062,0.695603506861264|short_description=p@chr4:140980608..140980620,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=19 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:140980608..140980620,+ | |||
|id=chr4:140980608..140980620,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002494,6.30e-09,3;CL:0000737,6.30e-09,3;CL:0000746,6.30e-09,3;CL:0000513,6.30e-09,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007100!8.07e-18!18;UBERON:0000948!8.07e-18!18;UBERON:0005498!8.07e-18!18;UBERON:0004140!8.07e-18!18;UBERON:0009881!8.07e-18!18;UBERON:0004141!8.07e-18!18;UBERON:0003084!8.07e-18!18;UBERON:0007005!8.07e-18!18;UBERON:0004139!8.07e-18!18;UBERON:0004291!8.07e-18!18;UBERON:0004535!8.11e-14!23;UBERON:0001009!8.11e-14!23;UBERON:0004872!2.52e-11!33;UBERON:0003103!2.36e-07!43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,3.52e-52,18;UBERON:0000948,3.52e-52,18;UBERON:0005498,3.52e-52,18;UBERON:0004140,3.52e-52,18;UBERON:0009881,3.52e-52,18;UBERON:0004141,3.52e-52,18;UBERON:0003084,3.52e-52,18;UBERON:0007005,3.52e-52,18;UBERON:0004139,3.52e-52,18;UBERON:0004291,3.52e-52,18;UBERON:0004535,2.63e-44,23;UBERON:0001009,2.63e-44,23;UBERON:0004872,1.25e-29,33;UBERON:0003103,5.60e-22,43;UBERON:0003914,1.45e-19,47;UBERON:0003081,2.15e-12,87;UBERON:0000926,1.26e-08,120;UBERON:0004120,1.26e-08,120;UBERON:0006603,1.26e-08,120;UBERON:0010314,4.60e-08,92 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.58328969722285,0.139986421625363,0,0,0,0,1.80081605225163,2.29226751951005,2.06268836910977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227178579999552,0.0755715601067855,0,0,0,0,0,0,1.12355536105401,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0.23517741427141,0.125666591329675,0.247194967734374,1.01219549843938,0,2.58826959915855,2.65009822152472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0.124406970610093,0,0,0,0,0.360124259610698,0.452114453507145,0.136072998302656,0.2562274405697,0,0.517406741478031,0,0,0,0,0,0.696504333044333,0,0,0,0,0,5.38527008592305,4.92504725960302,6.48223421259654,8.52281048106757,5.90292695242211,11.5700334665534,17.9051137457814,9.65784245038629,10.6256461554124,11.5191894939436,30.0426459264744,8.59329381186071,2.04679982395465,11.8557062257167,6.57611451925822,0,0,0,0,0,0,0.257734922644187,0.201683524623343,0.22237804384487,0.380451252225118,0,0.164698954724011,0,0.198956472041151,0,0,0.432276099749388,0.199141273254367,0,0,0,0.203651327845314,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488894929326078,0.169745085775188,0,0,0,0.585400943573396,0.472905432318573,0,0.159454768657487,0.163863314715738,0,0.289298117163023,0,0,0,0,0,0,0,2.52470927204373,0,0,0,0,0,0,0.404810701674894,0,0,0,0.141940085208269,0.35613120733451,0.162886959353576,0.824850614862677,0,0,0.302323556964751,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0.178368817602071,0,0,0.938686832254841,0.21183207086382,0.220528398054962,0.16488625294148,0.484393280087717,0.180938774784468,0,0.164140899745061,0,0,0,0,0,0,0.136694227721025,0,0,0,0,0.954670618015114,0,0.609958401380546,0,0.418176592028937,0,0.269728692769641,0.0826534557253359,0,0.518459893167171,0,1.69107881605257,0,0,0,0,0.337912250981556,0,0,0,0,0.288030006257865,0,0,0,0.129920822977795,0,0.198681354781265,0.120195449519969,0.147689527174577,0,0,0,0,0,0,3.17422537061296,0,0,0,0.386379188064381,0.187682475451182,0,0.214368379079066,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0,0.44449345560323,0.412070114477788,0.64183841918363,0.252697211763798,0.50695859978048,0.943131706930381,0.187283014939765,0.256100609619477,0.402048282689293,0.952587382566147,0.347652977834566,0.77163688185482,1.64834360321323,0.588795680537589,0.342869252385415,0.887379030796687,0.715308569841963,0.436039249896986,0.564656282491984,0.169229215783353,0.914639864363863,2.10455769150274,0.135804113845862,1.12228454331548,0.593175090620871,0.985044823755635,1.22769312950907,0.154936841185966,0.192906610981141,1.24905288968973,0.233931608445408,0.214871054048298,2.29545998482612,0.882365676478062,0.695603506861264 | |||
|short_description=p@chr4:140980608..140980620,+ | |||
}} |
Revision as of 04:20, 14 September 2013
Short description: | p@chr4:140980608..140980620, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:140980608..140980620, + |
Coexpression cluster: | MCL_coexpression_mm9:19 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiocyte | 6.30e-09 | 3 |
striated muscle cell | 6.30e-09 | 3 |
cardiac muscle cell | 6.30e-09 | 3 |
cardiac muscle myoblast | 6.30e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 3.52e-52 | 18 |
heart | 3.52e-52 | 18 |
primitive heart tube | 3.52e-52 | 18 |
primary heart field | 3.52e-52 | 18 |
anterior lateral plate mesoderm | 3.52e-52 | 18 |
heart tube | 3.52e-52 | 18 |
heart primordium | 3.52e-52 | 18 |
cardiac mesoderm | 3.52e-52 | 18 |
cardiogenic plate | 3.52e-52 | 18 |
heart rudiment | 3.52e-52 | 18 |
cardiovascular system | 2.63e-44 | 23 |
circulatory system | 2.63e-44 | 23 |
splanchnic layer of lateral plate mesoderm | 1.25e-29 | 33 |
compound organ | 5.60e-22 | 43 |
epithelial tube | 1.45e-19 | 47 |
lateral plate mesoderm | 2.15e-12 | 87 |
mesoderm | 1.26e-08 | 120 |
mesoderm-derived structure | 1.26e-08 | 120 |
presumptive mesoderm | 1.26e-08 | 120 |
structure with developmental contribution from neural crest | 4.60e-08 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.