FFCP PHASE1:Mm9::chr10:116333964..116334012,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=237558|HGNC=|MCL_coexpression_id=12|UniProt=Q3UN70|association_with_transcript=-29bp_to_ENSMUST00000048229,NM_001033333,uc007hci.1_5end|description=CAGE_peak_1_at_Gm239_5end|id=chr10:116333964..116334012,-|ontology_enrichment_celltype=CL:0002563!8.18e-12!9;CL:0002251!8.18e-12!9;CL:0000239!1.43e-08!6;CL:0000677!1.43e-08!6;CL:0000212!1.43e-08!6;CL:0000584!1.43e-08!6;CL:0000075!3.80e-07!7|ontology_enrichment_celltype_v019_2=CL:0002563,7.86e-20,9;CL:0002251,7.86e-20,9;CL:0000239,4.73e-14,6;CL:0000677,4.73e-14,6;CL:0000584,4.73e-14,6;CL:0000075,6.33e-12,7;CL:0002076,3.75e-11,15;CL:0000066,6.27e-11,25;CL:0000223,6.53e-08,20;CL:0000682,1.65e-07,3;CL:0002250,2.35e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!4.36e-21!43;UBERON:0000344!3.43e-19!15;UBERON:0005409!1.14e-18!59;UBERON:0001242!7.45e-17!13;UBERON:0000060!7.45e-17!13;UBERON:0001262!7.45e-17!13;UBERON:0004786!7.45e-17!13;UBERON:0003350!8.18e-12!9;UBERON:0004808!8.18e-12!9;UBERON:0001277!8.18e-12!9;UBERON:0004923!4.91e-10!24;UBERON:0000485!3.55e-09!11|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.85e-52,31;UBERON:0005409,1.74e-34,47;UBERON:0000344,5.00e-33,15;UBERON:0001242,7.64e-29,13;UBERON:0001262,7.64e-29,13;UBERON:0004786,7.64e-29,13;UBERON:0003350,7.86e-20,9;UBERON:0004808,7.86e-20,9;UBERON:0001277,7.86e-20,9;UBERON:0004923,3.44e-19,24;UBERON:0000485,6.96e-16,11;UBERON:0001007,6.39e-12,116;UBERON:0001555,6.39e-12,116;UBERON:0007026,6.39e-12,116;UBERON:0004119,1.35e-11,118;UBERON:0000925,1.35e-11,118;UBERON:0006595,1.35e-11,118;UBERON:0002108,3.09e-10,4;UBERON:0004921,4.09e-10,114;UBERON:0000331,2.27e-08,3;UBERON:0002116,2.27e-08,3;UBERON:0001204,2.27e-08,3;UBERON:0001168,2.27e-08,3|phase1_expression=0,33.850614541018,41.8599300238373,66.2396622761958,102.182728909055,21.4885468047219,20.5579123724063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.9982951285165,31.6584807872695,31.0085260622111,33.5994357004078,28.8731451799091,74.1091335879858,77.8773100958186,38.8028393646783,0,0,0,32.640233031894,22.7741464141135,28.787879232994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38755514223978,0,0,0,0,0,0,0,0,0,0,14.8439043634778,0,0.29688427812965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.3185582812887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.015647345234,39.1386838662046,0,0.232236671860439,5.67016829817211,12.1010114774006,11.7860363237781,12.5548913234289,32.2679761850268,14.658206970437,9.80207314321051,10.3457365461398,10.9179888786707,44.9409704327111,23.9913235360911,36.2437117322948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0.234690248288502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39328098385976,0,0,0,0,0,0,0,0,0,0.177340233642274,0.178368817602071,0,0,0,0,0,0,0,0,0,0,27.6906794798358,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,1.18805874903981,0.209088296014469,0.218362563746178,0,0.0826534557253359,0,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0.120195449519969,0,0,0,0,0,0.0962118416403295,0.116876902181569,0,0,0,0,0,0,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0.729320151204882,0,0.367687016900028,0.666740183404846,1.23621034343337,1.28367683836726,0.758091635291392,0.760437899670719,0.754505365544305,1.12369808963859,0.640251524048693,0.861532034334199,1.90517476513229,0.463537303779422,0.77163688185482,0.824171801606613,0.588795680537589,0.342869252385415,0.177475806159338,0.715308569841963,0.290692833264657,0.846984423737976,0.761531471025089,0.548783918618318,0.526139422875686,0.407412341537585,1.68342681497322,0.711810108745045,0.985044823755635,0,0.464810523557898,0.385813221962283,0,0.935726433781634,0,0,0,0|short_description=p1@Gm239}} | ||
|EntrezGene=237558 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=Q3UN70 | |||
|association_with_transcript=-29bp_to_ENSMUST00000048229,NM_001033333,uc007hci.1_5end | |||
|description=CAGE_peak_1_at_Gm239_5end | |||
|id=chr10:116333964..116334012,- | |||
|ontology_enrichment_celltype=CL:0002563!8.18e-12!9;CL:0002251!8.18e-12!9;CL:0000239!1.43e-08!6;CL:0000677!1.43e-08!6;CL:0000212!1.43e-08!6;CL:0000584!1.43e-08!6;CL:0000075!3.80e-07!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,7.86e-20,9;CL:0002251,7.86e-20,9;CL:0000239,4.73e-14,6;CL:0000677,4.73e-14,6;CL:0000584,4.73e-14,6;CL:0000075,6.33e-12,7;CL:0002076,3.75e-11,15;CL:0000066,6.27e-11,25;CL:0000223,6.53e-08,20;CL:0000682,1.65e-07,3;CL:0002250,2.35e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!4.36e-21!43;UBERON:0000344!3.43e-19!15;UBERON:0005409!1.14e-18!59;UBERON:0001242!7.45e-17!13;UBERON:0000060!7.45e-17!13;UBERON:0001262!7.45e-17!13;UBERON:0004786!7.45e-17!13;UBERON:0003350!8.18e-12!9;UBERON:0004808!8.18e-12!9;UBERON:0001277!8.18e-12!9;UBERON:0004923!4.91e-10!24;UBERON:0000485!3.55e-09!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.85e-52,31;UBERON:0005409,1.74e-34,47;UBERON:0000344,5.00e-33,15;UBERON:0001242,7.64e-29,13;UBERON:0001262,7.64e-29,13;UBERON:0004786,7.64e-29,13;UBERON:0003350,7.86e-20,9;UBERON:0004808,7.86e-20,9;UBERON:0001277,7.86e-20,9;UBERON:0004923,3.44e-19,24;UBERON:0000485,6.96e-16,11;UBERON:0001007,6.39e-12,116;UBERON:0001555,6.39e-12,116;UBERON:0007026,6.39e-12,116;UBERON:0004119,1.35e-11,118;UBERON:0000925,1.35e-11,118;UBERON:0006595,1.35e-11,118;UBERON:0002108,3.09e-10,4;UBERON:0004921,4.09e-10,114;UBERON:0000331,2.27e-08,3;UBERON:0002116,2.27e-08,3;UBERON:0001204,2.27e-08,3;UBERON:0001168,2.27e-08,3 | |||
|phase1_expression=0,33.850614541018,41.8599300238373,66.2396622761958,102.182728909055,21.4885468047219,20.5579123724063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.9982951285165,31.6584807872695,31.0085260622111,33.5994357004078,28.8731451799091,74.1091335879858,77.8773100958186,38.8028393646783,0,0,0,32.640233031894,22.7741464141135,28.787879232994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38755514223978,0,0,0,0,0,0,0,0,0,0,14.8439043634778,0,0.29688427812965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.3185582812887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.015647345234,39.1386838662046,0,0.232236671860439,5.67016829817211,12.1010114774006,11.7860363237781,12.5548913234289,32.2679761850268,14.658206970437,9.80207314321051,10.3457365461398,10.9179888786707,44.9409704327111,23.9913235360911,36.2437117322948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0.234690248288502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39328098385976,0,0,0,0,0,0,0,0,0,0.177340233642274,0.178368817602071,0,0,0,0,0,0,0,0,0,0,27.6906794798358,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,1.18805874903981,0.209088296014469,0.218362563746178,0,0.0826534557253359,0,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0.120195449519969,0,0,0,0,0,0.0962118416403295,0.116876902181569,0,0,0,0,0,0,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0.729320151204882,0,0.367687016900028,0.666740183404846,1.23621034343337,1.28367683836726,0.758091635291392,0.760437899670719,0.754505365544305,1.12369808963859,0.640251524048693,0.861532034334199,1.90517476513229,0.463537303779422,0.77163688185482,0.824171801606613,0.588795680537589,0.342869252385415,0.177475806159338,0.715308569841963,0.290692833264657,0.846984423737976,0.761531471025089,0.548783918618318,0.526139422875686,0.407412341537585,1.68342681497322,0.711810108745045,0.985044823755635,0,0.464810523557898,0.385813221962283,0,0.935726433781634,0,0,0,0 | |||
|short_description=p1@Gm239 | |||
}} |
Revision as of 15:48, 12 September 2013
Short description: | p1@Gm239 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gm239_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -29bp_to_ENSMUST00000048229, NM_001033333, uc007hci.1_5end |
EntrezGene: | Gm239 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 7.86e-20 | 9 |
epithelial cell of alimentary canal | 7.86e-20 | 9 |
brush border epithelial cell | 4.73e-14 | 6 |
gut absorptive cell | 4.73e-14 | 6 |
enterocyte | 4.73e-14 | 6 |
columnar/cuboidal epithelial cell | 6.33e-12 | 7 |
endo-epithelial cell | 3.75e-11 | 15 |
epithelial cell | 6.27e-11 | 25 |
endodermal cell | 6.53e-08 | 20 |
M cell of gut | 1.65e-07 | 3 |
intestinal crypt stem cell | 2.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.85e-52 | 31 |
gastrointestinal system | 1.74e-34 | 47 |
mucosa | 5.00e-33 | 15 |
intestinal mucosa | 7.64e-29 | 13 |
wall of intestine | 7.64e-29 | 13 |
gastrointestinal system mucosa | 7.64e-29 | 13 |
epithelium of mucosa | 7.86e-20 | 9 |
gastrointestinal system epithelium | 7.86e-20 | 9 |
intestinal epithelium | 7.86e-20 | 9 |
organ component layer | 3.44e-19 | 24 |
simple columnar epithelium | 6.96e-16 | 11 |
digestive system | 6.39e-12 | 116 |
digestive tract | 6.39e-12 | 116 |
primitive gut | 6.39e-12 | 116 |
endoderm-derived structure | 1.35e-11 | 118 |
endoderm | 1.35e-11 | 118 |
presumptive endoderm | 1.35e-11 | 118 |
small intestine | 3.09e-10 | 4 |
subdivision of digestive tract | 4.09e-10 | 114 |
ileal mucosa | 2.27e-08 | 3 |
ileum | 2.27e-08 | 3 |
mucosa of small intestine | 2.27e-08 | 3 |
wall of small intestine | 2.27e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.