FFCP PHASE1:Mm9::chr7:17428319..17428365,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=101540|HGNC=|MCL_coexpression_id=123|UniProt=E9Q185,Q8BZ03|association_with_transcript=36bp_to_ENSMUST00000168093,uc009fig.1_5end|description=CAGE_peak_2_at_Prkd2_5end|id=chr7:17428319..17428365,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!7.08e-09!29;UBERON:0003081!8.95e-09!88;UBERON:0000926!9.43e-09!193;UBERON:0004120!9.43e-09!193;UBERON:0006603!9.43e-09!193;UBERON:0000065!1.07e-08!41;UBERON:0001004!1.21e-08!42;UBERON:0001048!1.41e-07!147|ontology_enrichment_uberon_v019_2=UBERON:0004177,3.27e-09,29;UBERON:0005057,3.27e-09,29;UBERON:0000065,3.30e-09,41;UBERON:0001004,3.79e-09,42;UBERON:0003081,2.48e-08,87;UBERON:0000077,7.60e-08,35;UBERON:0001048,4.85e-07,134;UBERON:0000926,6.99e-07,120;UBERON:0004120,6.99e-07,120;UBERON:0006603,6.99e-07,120;UBERON:0002370,8.45e-07,23;UBERON:0000974,8.45e-07,23;UBERON:0004807,8.45e-07,23;UBERON:0005058,8.45e-07,23;UBERON:0003351,8.45e-07,23;UBERON:0009113,8.45e-07,23;UBERON:0003295,8.45e-07,23;UBERON:0009722,8.45e-07,23;UBERON:0005562,8.45e-07,23;UBERON:0007690,8.45e-07,23|phase1_expression=1.76163731815273,0.697950815278722,1.81999695755814,1.81478526784098,1.00179145989269,0.671517087647559,1.16806320297763,50.4872194656563,18.4433226018683,22.0020654742674,1.71217968225505,1.51567102091139,56.1538394174355,59.7955552545942,7.32841475994458,6.88415909125408,0.699561878128147,43.6915099021159,41.8199022497503,35.6487307510345,6.29320347117916,4.56738375524072,1.56719873483361,4.7997726838022,1.37645568640302,1.14846392823004,0.86152399231815,1.72376986148711,0.380046838912748,0.252030129759931,0.886922042621219,0,1.23012957516914,0,0.577703239502549,0.166234645358492,0.204169356262369,28.8786825208466,10.1573594788094,21.9879972468995,22.3527965451785,27.3218193983378,29.1306211818692,2.51793635951155,2.83855407414641,0.917733760808408,5.47673941043627,1.09012578190223,1.31811709640683,0.972149495371417,1.81982348112971,0,35.9054776963556,36.9934692425786,57.4720396533613,1.02903774414379,1.43266719969378,0.515672092277442,1.41621522601718,0.528990979272033,0.633831403506179,3.38844532069132,6.22506357277798,0.899899717281399,0.988866362566974,0.7104801149461,2.09720077362883,3.07374644257244,1.55534418462716,2.02508907497536,1.89292465216244,0.856952953211411,1.10434270475807,1.71487118900936,1.53352753629178,0.919218786610021,0,0.638436690425939,0.46081959976873,1.58263545276233,2.10421580285542,1.56274011167028,0.558365998002762,0.56276261003168,0.45839474333043,1.17851434189467,2.42031857358475,2.05039390407831,0.454357159999104,0.529000920747499,16.8121403446973,7.74381489283248,0.679971333707751,0,0.649776417447669,0.896053774194671,5.19644354487482,0.340860645156116,0.779358013808606,1.06001872353102,0.704217098883403,1.28326477414318,0,0,0.216491041011214,0.506719730950197,0,3.88225191044804,73.5383589557968,4.45326417194474,4.3371331691534,2.43572382649713,2.99800146432876,3.01445281105245,4.58595957829249,3.14166478324189,1.97755974187499,7.22996784599558,7.07688441559899,4.69123864847487,11.0420759230197,7.75800405016355,0,0.878342391034642,1.25668024088073,3.32094171771169,4.67278985573089,0.599902730993408,2.1601938602421,1.19832511523858,1.37250180845588,1.25654352112864,0.521472960576829,0.511430914660661,0.41557608911912,0.486723789203273,2.64782346010822,8.33526703087623,2.27450482590307,1.89397670297827,3.3831315170303,2.5289231487682,3.96136685571768,2.71268672104287,1.7009124787832,2.94661556655154,1.96773621575431,1.29351685369508,6.25147179505242,7.56424320671277,7.38994721488585,5.69908904311695,4.17070873838397,5.2237824978325,5.55611768301447,3.58261680273288,0.702213187313235,0.51469581422943,1.70498099637356,4.55676699578104,2.11073453982987,5.04173772090842,7.33908680314152,5.50939848892731,6.47921874126989,5.8133486187602,4.29237442239391,5.02090972178829,5.10135534731789,8.20837320395476,9.24184428822755,7.89479932096795,9.87975518809728,8.58921080066379,0.841159794256509,1.74937841044784,0.991256348951394,1.58670339998127,5.11891801284562,3.25131340604614,3.99489130098489,3.63030344322017,3.55804870151792,3.61428689613862,2.37264530772256,1.31759163779209,2.01068167040216,2.98434708061726,2.14460495831032,4.49409704327111,1.72910439899755,1.1948476395262,6.06937283049861,4.22719496655997,12.3978509240388,6.51684249105006,5.23671715352589,4.06787755363848,5.50157872981038,4.13308414342886,2.98297582898612,2.22114895059241,1.77871576252289,2.66952169145751,2.55526693647164,2.69834534861824,0.811440485554012,3.37648023653384,3.31013607315846,4.60313819921297,3.24270453550071,0.823684239564244,10.0637744569148,2.97712758134803,3.74445207737473,2.27320990152401,0.896987067609561,1.92977408545347,20.1380977281599,2.65287976478679,8.31121379854332,6.11082308790677,10.3263709246941,15.7455881995307,16.663054862021,14.4398899414771,13.0837169608139,13.730810758224,11.9591076493115,19.0081445070256,14.6782234586011,13.018415272336,0,0,2.45882136509518,4.13905119457099,1.76605648986571,0.586058432961016,0.327869890753351,3.7870639080656,0.94652465824877,1.95219372148319,1.50796378412959,1.43381278771531,1.78238939265915,1.41538265394416,3.23848561339915,2.92255857911312,1.18586333383957,0.642642632843614,4.11626247103979,3.91744328067962,4.0721739838394,5.27904393512113,1.32745138339963,2.91336763385978,3.62788268357701,3.77210159511796,3.54362271456927,3.99665692327106,2.84271122485043,4.36240475373007,2.85197902707777,4.74055136903724,4.21674434299995,4.12542172992747,3.74483566329167,3.42116078659489,4.39819524861365,6.64444808597936,5.32020700926821,4.10248280484762,4.44282355625727,4.26250928760439,2.81606049676452,1.48282449604674,1.32317038832977,4.122156323537,2.9063596805263,2.53314284698255,1.43246812803764,0.656563598980245,1.7488850197791,1.11255181206306,18.6249260069659,8.87463532241857,8.33375373163703,7.34636982318295,12.5758689503343,13.2691340459783,13.5982743995084,15.1147568509551,15.8929969875087,0.954670618015114,3.47969592939249,5.28630614529807,3.02414954301044,1.88179466413022,3.71216358368502,2.29269388854195,2.81021749466142,1.30877970992015,0.777689839750757,3.72803587852155,0,3.73791365109947,1.98550188548517,2.72231663681667,2.97067593998782,2.36538575687089,2.11243029562357,2.21347454234715,0.734015410979976,0.241584120826006,1.72818003754719,79.0027801570446,3.85177909051312,6.88163413004343,16.49994451818,38.669766264176,55.4320979839729,40.7462573872694,40.4669304458342,55.5315474714812,46.7909792861699,57.8742302685465,73.1908684355541,56.5725628845137,66.0354497325865,2.26730383615211,1.77588762699252,0.807424709485281,0.503653849092235,3.28422309854724,3.56596703357246,4.02933573387983,2.57242054894879,1.50471631210609,0.564751842617067,0.920650473014354,0,1.89038500578056,0,0,0,0.45032120322422,0,1.03552062350364,3.94391920819871,3.59122386060928,2.04880326904961,5.59145449257076,2.93458427679175,2.5738091183002,5.33392146723877,5.76898160268904,2.88827288632634,7.58091635291392,5.0695859978048,4.90428487603798,5.99305647807247,4.67383612555546,6.08815970929501,8.57328644309533,4.75125736373908,3.8581844092741,3.70877310722976,6.62395140604788,4.80016953339582,4.43689515398344,5.48403236878838,5.66851024866081,6.21121910741182,4.90764725771724,3.47563148458268,6.31367307450823,4.75314398460516,7.2948495315506,5.33857581558784,4.0386837773981,7.36615877705441,5.57772628269478,4.24394544158511,4.74640098082097,6.08222181958062,5.15690529715916,4.20834330551455,7.72069966918304,7.18790290423307|short_description=p2@Prkd2}} | ||
|EntrezGene=101540 | |||
|HGNC= | |||
|MCL_coexpression_id=123 | |||
|UniProt=E9Q185,Q8BZ03 | |||
|association_with_transcript=36bp_to_ENSMUST00000168093,uc009fig.1_5end | |||
|description=CAGE_peak_2_at_Prkd2_5end | |||
|id=chr7:17428319..17428365,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!7.08e-09!29;UBERON:0003081!8.95e-09!88;UBERON:0000926!9.43e-09!193;UBERON:0004120!9.43e-09!193;UBERON:0006603!9.43e-09!193;UBERON:0000065!1.07e-08!41;UBERON:0001004!1.21e-08!42;UBERON:0001048!1.41e-07!147 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,3.27e-09,29;UBERON:0005057,3.27e-09,29;UBERON:0000065,3.30e-09,41;UBERON:0001004,3.79e-09,42;UBERON:0003081,2.48e-08,87;UBERON:0000077,7.60e-08,35;UBERON:0001048,4.85e-07,134;UBERON:0000926,6.99e-07,120;UBERON:0004120,6.99e-07,120;UBERON:0006603,6.99e-07,120;UBERON:0002370,8.45e-07,23;UBERON:0000974,8.45e-07,23;UBERON:0004807,8.45e-07,23;UBERON:0005058,8.45e-07,23;UBERON:0003351,8.45e-07,23;UBERON:0009113,8.45e-07,23;UBERON:0003295,8.45e-07,23;UBERON:0009722,8.45e-07,23;UBERON:0005562,8.45e-07,23;UBERON:0007690,8.45e-07,23 | |||
|phase1_expression=1.76163731815273,0.697950815278722,1.81999695755814,1.81478526784098,1.00179145989269,0.671517087647559,1.16806320297763,50.4872194656563,18.4433226018683,22.0020654742674,1.71217968225505,1.51567102091139,56.1538394174355,59.7955552545942,7.32841475994458,6.88415909125408,0.699561878128147,43.6915099021159,41.8199022497503,35.6487307510345,6.29320347117916,4.56738375524072,1.56719873483361,4.7997726838022,1.37645568640302,1.14846392823004,0.86152399231815,1.72376986148711,0.380046838912748,0.252030129759931,0.886922042621219,0,1.23012957516914,0,0.577703239502549,0.166234645358492,0.204169356262369,28.8786825208466,10.1573594788094,21.9879972468995,22.3527965451785,27.3218193983378,29.1306211818692,2.51793635951155,2.83855407414641,0.917733760808408,5.47673941043627,1.09012578190223,1.31811709640683,0.972149495371417,1.81982348112971,0,35.9054776963556,36.9934692425786,57.4720396533613,1.02903774414379,1.43266719969378,0.515672092277442,1.41621522601718,0.528990979272033,0.633831403506179,3.38844532069132,6.22506357277798,0.899899717281399,0.988866362566974,0.7104801149461,2.09720077362883,3.07374644257244,1.55534418462716,2.02508907497536,1.89292465216244,0.856952953211411,1.10434270475807,1.71487118900936,1.53352753629178,0.919218786610021,0,0.638436690425939,0.46081959976873,1.58263545276233,2.10421580285542,1.56274011167028,0.558365998002762,0.56276261003168,0.45839474333043,1.17851434189467,2.42031857358475,2.05039390407831,0.454357159999104,0.529000920747499,16.8121403446973,7.74381489283248,0.679971333707751,0,0.649776417447669,0.896053774194671,5.19644354487482,0.340860645156116,0.779358013808606,1.06001872353102,0.704217098883403,1.28326477414318,0,0,0.216491041011214,0.506719730950197,0,3.88225191044804,73.5383589557968,4.45326417194474,4.3371331691534,2.43572382649713,2.99800146432876,3.01445281105245,4.58595957829249,3.14166478324189,1.97755974187499,7.22996784599558,7.07688441559899,4.69123864847487,11.0420759230197,7.75800405016355,0,0.878342391034642,1.25668024088073,3.32094171771169,4.67278985573089,0.599902730993408,2.1601938602421,1.19832511523858,1.37250180845588,1.25654352112864,0.521472960576829,0.511430914660661,0.41557608911912,0.486723789203273,2.64782346010822,8.33526703087623,2.27450482590307,1.89397670297827,3.3831315170303,2.5289231487682,3.96136685571768,2.71268672104287,1.7009124787832,2.94661556655154,1.96773621575431,1.29351685369508,6.25147179505242,7.56424320671277,7.38994721488585,5.69908904311695,4.17070873838397,5.2237824978325,5.55611768301447,3.58261680273288,0.702213187313235,0.51469581422943,1.70498099637356,4.55676699578104,2.11073453982987,5.04173772090842,7.33908680314152,5.50939848892731,6.47921874126989,5.8133486187602,4.29237442239391,5.02090972178829,5.10135534731789,8.20837320395476,9.24184428822755,7.89479932096795,9.87975518809728,8.58921080066379,0.841159794256509,1.74937841044784,0.991256348951394,1.58670339998127,5.11891801284562,3.25131340604614,3.99489130098489,3.63030344322017,3.55804870151792,3.61428689613862,2.37264530772256,1.31759163779209,2.01068167040216,2.98434708061726,2.14460495831032,4.49409704327111,1.72910439899755,1.1948476395262,6.06937283049861,4.22719496655997,12.3978509240388,6.51684249105006,5.23671715352589,4.06787755363848,5.50157872981038,4.13308414342886,2.98297582898612,2.22114895059241,1.77871576252289,2.66952169145751,2.55526693647164,2.69834534861824,0.811440485554012,3.37648023653384,3.31013607315846,4.60313819921297,3.24270453550071,0.823684239564244,10.0637744569148,2.97712758134803,3.74445207737473,2.27320990152401,0.896987067609561,1.92977408545347,20.1380977281599,2.65287976478679,8.31121379854332,6.11082308790677,10.3263709246941,15.7455881995307,16.663054862021,14.4398899414771,13.0837169608139,13.730810758224,11.9591076493115,19.0081445070256,14.6782234586011,13.018415272336,0,0,2.45882136509518,4.13905119457099,1.76605648986571,0.586058432961016,0.327869890753351,3.7870639080656,0.94652465824877,1.95219372148319,1.50796378412959,1.43381278771531,1.78238939265915,1.41538265394416,3.23848561339915,2.92255857911312,1.18586333383957,0.642642632843614,4.11626247103979,3.91744328067962,4.0721739838394,5.27904393512113,1.32745138339963,2.91336763385978,3.62788268357701,3.77210159511796,3.54362271456927,3.99665692327106,2.84271122485043,4.36240475373007,2.85197902707777,4.74055136903724,4.21674434299995,4.12542172992747,3.74483566329167,3.42116078659489,4.39819524861365,6.64444808597936,5.32020700926821,4.10248280484762,4.44282355625727,4.26250928760439,2.81606049676452,1.48282449604674,1.32317038832977,4.122156323537,2.9063596805263,2.53314284698255,1.43246812803764,0.656563598980245,1.7488850197791,1.11255181206306,18.6249260069659,8.87463532241857,8.33375373163703,7.34636982318295,12.5758689503343,13.2691340459783,13.5982743995084,15.1147568509551,15.8929969875087,0.954670618015114,3.47969592939249,5.28630614529807,3.02414954301044,1.88179466413022,3.71216358368502,2.29269388854195,2.81021749466142,1.30877970992015,0.777689839750757,3.72803587852155,0,3.73791365109947,1.98550188548517,2.72231663681667,2.97067593998782,2.36538575687089,2.11243029562357,2.21347454234715,0.734015410979976,0.241584120826006,1.72818003754719,79.0027801570446,3.85177909051312,6.88163413004343,16.49994451818,38.669766264176,55.4320979839729,40.7462573872694,40.4669304458342,55.5315474714812,46.7909792861699,57.8742302685465,73.1908684355541,56.5725628845137,66.0354497325865,2.26730383615211,1.77588762699252,0.807424709485281,0.503653849092235,3.28422309854724,3.56596703357246,4.02933573387983,2.57242054894879,1.50471631210609,0.564751842617067,0.920650473014354,0,1.89038500578056,0,0,0,0.45032120322422,0,1.03552062350364,3.94391920819871,3.59122386060928,2.04880326904961,5.59145449257076,2.93458427679175,2.5738091183002,5.33392146723877,5.76898160268904,2.88827288632634,7.58091635291392,5.0695859978048,4.90428487603798,5.99305647807247,4.67383612555546,6.08815970929501,8.57328644309533,4.75125736373908,3.8581844092741,3.70877310722976,6.62395140604788,4.80016953339582,4.43689515398344,5.48403236878838,5.66851024866081,6.21121910741182,4.90764725771724,3.47563148458268,6.31367307450823,4.75314398460516,7.2948495315506,5.33857581558784,4.0386837773981,7.36615877705441,5.57772628269478,4.24394544158511,4.74640098082097,6.08222181958062,5.15690529715916,4.20834330551455,7.72069966918304,7.18790290423307 | |||
|short_description=p2@Prkd2 | |||
}} |
Revision as of 12:35, 14 September 2013
Short description: | p2@Prkd2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Prkd2_5end |
Coexpression cluster: | MCL_coexpression_mm9:123 |
Association with transcript: | 36bp_to_ENSMUST00000168093, uc009fig.1_5end |
EntrezGene: | Prkd2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 3.27e-09 | 29 |
immune organ | 3.27e-09 | 29 |
respiratory tract | 3.30e-09 | 41 |
respiratory system | 3.79e-09 | 42 |
lateral plate mesoderm | 2.48e-08 | 87 |
mixed endoderm/mesoderm-derived structure | 7.60e-08 | 35 |
primordium | 4.85e-07 | 134 |
mesoderm | 6.99e-07 | 120 |
mesoderm-derived structure | 6.99e-07 | 120 |
presumptive mesoderm | 6.99e-07 | 120 |
thymus | 8.45e-07 | 23 |
neck | 8.45e-07 | 23 |
respiratory system epithelium | 8.45e-07 | 23 |
hemolymphoid system gland | 8.45e-07 | 23 |
pharyngeal epithelium | 8.45e-07 | 23 |
thymic region | 8.45e-07 | 23 |
pharyngeal gland | 8.45e-07 | 23 |
entire pharyngeal arch endoderm | 8.45e-07 | 23 |
thymus primordium | 8.45e-07 | 23 |
early pharyngeal endoderm | 8.45e-07 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.