Personal tools

MCL coexpression mm9:372: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 7: Line 7:
|ontology_enrichment_uberon=UBERON:0002193!2.15e-15!48;UBERON:0002405!2.15e-15!48;UBERON:0002390!8.60e-12!45;UBERON:0003061!8.60e-12!45;UBERON:0004177!8.16e-09!29;UBERON:0005057!8.16e-09!29;UBERON:0003081!5.46e-08!87;UBERON:0000077!6.11e-08!35;UBERON:0002465!4.95e-07!3
|ontology_enrichment_uberon=UBERON:0002193!2.15e-15!48;UBERON:0002405!2.15e-15!48;UBERON:0002390!8.60e-12!45;UBERON:0003061!8.60e-12!45;UBERON:0004177!8.16e-09!29;UBERON:0005057!8.16e-09!29;UBERON:0003081!5.46e-08!87;UBERON:0000077!6.11e-08!35;UBERON:0002465!4.95e-07!3
|tfbs_overrepresentation_for_novel_motifs=1.30607,0.00275503,0.11338,0.15483,1.21228,0.493109,0.644497,0.766372,0.271611,0.0667304,0.195931,0.623949,0.253571,0.665571,1.79898,0,0.38962,0.768366,0.0203348,0.0868811,1.07045,0.216191,0.235613,0.206855,1.8013,0.256873,1.36041,0.178177,0.566523,0.139286,0.168752,0.476579,0.0529999,0.176299,0.0646774,0.00311975,0.0492863,0.21594,0.0411022,0.128447,0.203766,0.172188,0.705937,1.81134,0.0757397,0.147728,0.323935,0.188927,0.787211,0.272179,0.374992,0.277452,0.00911977,0.603398,0.619345,0.241579,1.00244,0.602302,0.0753109,0.240064,0.459084,0.777251,0.295313,0.365621,0.2499,3.73112,0.745869,1.08074,0.455021,0.938231,0.102831,0.792871,0.00260119,0.650163,0.0150431,0.0128935,0.0671053,0.314806,0.444191,0.0954455,0.110035,0.404291,0.283653,0.737927,0.545133,0.000236268,0.000354682,1.05762,0.327889,1.23935,0.811671,0.549603,0.487824,1.73274,0.155012,0.135896,0.100987,0.490297,0.324141,0.00714671,0.728357,0.476334,0.58753,0.375488,0.374608,0.171895,0.42513,0.186164,0.0980442,0.0941582,0.124464,0.58915,0.318143,1.72342,0.818358,0.444691,0.004331,0.157255,0.390716,0.180519,0.655146,0.348339,0.258253,0.314081,0.869916,0.447391,0.658496,0.481866,0.744444,0.0610298,0.572132,0.150169,0.716744,0.701605,0.838892,0.0135633,0.825822,0.17313,0.792231,1.60311,1.2081,0.750296,0.267427,0.48577,0.369214,0.172491,2.3805,1.56378,0.135184,0.210988,0.0524131,0.0016498,0.60483,0.0356935,0.251095,0.680035,0.76234,0.245756,0.127194,0.133575,0.801233,0.544365,0.447776,0.123129,0.366469,0.245542,0.410962,0.62125,0.242298
|tfbs_overrepresentation_for_novel_motifs=1.30607,0.00275503,0.11338,0.15483,1.21228,0.493109,0.644497,0.766372,0.271611,0.0667304,0.195931,0.623949,0.253571,0.665571,1.79898,0,0.38962,0.768366,0.0203348,0.0868811,1.07045,0.216191,0.235613,0.206855,1.8013,0.256873,1.36041,0.178177,0.566523,0.139286,0.168752,0.476579,0.0529999,0.176299,0.0646774,0.00311975,0.0492863,0.21594,0.0411022,0.128447,0.203766,0.172188,0.705937,1.81134,0.0757397,0.147728,0.323935,0.188927,0.787211,0.272179,0.374992,0.277452,0.00911977,0.603398,0.619345,0.241579,1.00244,0.602302,0.0753109,0.240064,0.459084,0.777251,0.295313,0.365621,0.2499,3.73112,0.745869,1.08074,0.455021,0.938231,0.102831,0.792871,0.00260119,0.650163,0.0150431,0.0128935,0.0671053,0.314806,0.444191,0.0954455,0.110035,0.404291,0.283653,0.737927,0.545133,0.000236268,0.000354682,1.05762,0.327889,1.23935,0.811671,0.549603,0.487824,1.73274,0.155012,0.135896,0.100987,0.490297,0.324141,0.00714671,0.728357,0.476334,0.58753,0.375488,0.374608,0.171895,0.42513,0.186164,0.0980442,0.0941582,0.124464,0.58915,0.318143,1.72342,0.818358,0.444691,0.004331,0.157255,0.390716,0.180519,0.655146,0.348339,0.258253,0.314081,0.869916,0.447391,0.658496,0.481866,0.744444,0.0610298,0.572132,0.150169,0.716744,0.701605,0.838892,0.0135633,0.825822,0.17313,0.792231,1.60311,1.2081,0.750296,0.267427,0.48577,0.369214,0.172491,2.3805,1.56378,0.135184,0.210988,0.0524131,0.0016498,0.60483,0.0356935,0.251095,0.680035,0.76234,0.245756,0.127194,0.133575,0.801233,0.544365,0.447776,0.123129,0.366469,0.245542,0.410962,0.62125,0.242298
|tfbs_overrepresentation_jaspar=MA0003.1;0.00127856,MA0004.1;0.15514,MA0006.1;0.224339,MA0007.1;0.145624,MA0009.1;2.16049,MA0014.1;3.96127e-05,MA0017.1;0.074682,MA0019.1;0.344318,MA0024.1;0.461433,MA0025.1;0.712532,MA0027.1;2.09948,MA0028.1;0.067163,MA0029.1;0.442582,MA0030.1;0.448261,MA0031.1;0.417663,MA0038.1;0.256813,MA0040.1;0.510947,MA0041.1;0.109446,MA0042.1;0.334544,MA0043.1;0.586618,MA0046.1;0.531807,MA0048.1;0.00730033,MA0050.1;0.180744,MA0051.1;0.263603,MA0052.1;0.518112,MA0055.1;0.136741,MA0056.1;0,MA0057.1;2.31008,MA0058.1;0.0984787,MA0059.1;0.105184,MA0060.1;0.0321237,MA0061.1;0.372144,MA0063.1;0,MA0066.1;0.248543,MA0067.1;0.817149,MA0068.1;0.0343014,MA0069.1;0.518414,MA0070.1;0.509795,MA0071.1;1.61449,MA0072.1;0.502282,MA0073.1;1.12814e-11,MA0074.1;0.222108,MA0076.1;0.285376,MA0077.1;0.48317,MA0078.1;0.289095,MA0081.1;0.118266,MA0083.1;0.585897,MA0084.1;1.1333,MA0087.1;1.34927,MA0088.1;0.00238225,MA0089.1;0,MA0090.1;0.416778,MA0091.1;0.491727,MA0092.1;0.417266,MA0093.1;0.0709755,MA0095.1;0,MA0098.1;0,MA0100.1;0.213782,MA0101.1;0.720996,MA0103.1;1.45318,MA0105.1;0.0133959,MA0106.1;1.45627,MA0107.1;0.0769078,MA0108.2;0.363107,MA0109.1;0,MA0111.1;1.39174,MA0113.1;0.273246,MA0114.1;0.0414319,MA0115.1;0.589161,MA0116.1;0.486423,MA0117.1;0.559943,MA0119.1;0.110503,MA0122.1;0.577888,MA0124.1;0.766819,MA0125.1;0.697415,MA0130.1;0,MA0131.1;0.340612,MA0132.1;0,MA0133.1;0,MA0135.1;0.619844,MA0136.1;0.666439,MA0139.1;0.0230855,MA0140.1;0.2137,MA0141.1;0.625596,MA0142.1;0.40532,MA0143.1;0.285913,MA0144.1;0.0425459,MA0145.1;0.0580487,MA0146.1;0.00382489,MA0147.1;0.0471319,MA0148.1;0.165681,MA0149.1;0.113293,MA0062.2;0.177624,MA0035.2;0.620478,MA0039.2;0.0214674,MA0138.2;0.334152,MA0002.2;0.472522,MA0137.2;0.0883456,MA0104.2;0.0278464,MA0047.2;0.256234,MA0112.2;3.16057,MA0065.2;0.254194,MA0150.1;0.145553,MA0151.1;0,MA0152.1;0.256315,MA0153.1;0.635107,MA0154.1;0.90272,MA0155.1;0.301849,MA0156.1;1.00164,MA0157.1;0.378326,MA0158.1;0,MA0159.1;0.190402,MA0160.1;0.968677,MA0161.1;0,MA0162.1;0.000145355,MA0163.1;0.000105786,MA0164.1;0.667063,MA0080.2;0.563938,MA0018.2;0.244112,MA0099.2;0.877027,MA0079.2;2.91993e-10,MA0102.2;1.18455,MA0258.1;0.145568,MA0259.1;0.0431217,MA0442.1;0
}}
}}

Revision as of 11:38, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr12:114659326..114659343,-p5@uc007pgs.1
Mm9::chr12:114659370..114659385,-p6@uc007pgs.1
Mm9::chr12:114659399..114659410,-p8@uc007pgs.1
Mm9::chr12:114659680..114659703,-p1@uc007pgs.1
Mm9::chr12:114660209..114660223,-p@chr12:114660209..114660223
-
Mm9::chr12:114660245..114660254,-p@chr12:114660245..114660254
-
Mm9::chr12:114660278..114660329,-p@chr12:114660278..114660329
-
Mm9::chr12:114660353..114660382,-p@chr12:114660353..114660382
-
Mm9::chr12:114660412..114660440,-p@chr12:114660412..114660440
-
Mm9::chr12:114660446..114660482,-p@chr12:114660446..114660482
-
Mm9::chr12:114660722..114660729,-p@chr12:114660722..114660729
-
Mm9::chr12:114660743..114660759,-p@chr12:114660743..114660759
-
Mm9::chr12:114660842..114660852,-p@chr12:114660842..114660852
-
Mm9::chr12:114660863..114660872,-p@chr12:114660863..114660872
-
Mm9::chr12:114836185..114836194,-p1@ENSMUST00000103444
Mm9::chr12:115135215..115135221,-p1@uc007pgx.1
Mm9::chr12:116262681..116262685,-p@chr12:116262681..116262685
-
Mm9::chr6:67709660..67709666,+p1@ENSMUST00000103305
Mm9::chr6:68169930..68169937,+p2@uc009cfu.1
Mm9::chr6:68169938..68169951,+p1@uc009cfu.1
Mm9::chr6:68387870..68387886,+p@chr6:68387870..68387886
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system2.15e-1548
immune system2.15e-1548
hematopoietic system8.60e-1245
blood island8.60e-1245
hemopoietic organ8.16e-0929
immune organ8.16e-0929
lateral plate mesoderm5.46e-0887
mixed endoderm/mesoderm-derived structure6.11e-0835
lymphoid system4.95e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00127856
MA0004.10.15514
MA0006.10.224339
MA0007.10.145624
MA0009.12.16049
MA0014.13.96127e-05
MA0017.10.074682
MA0019.10.344318
MA0024.10.461433
MA0025.10.712532
MA0027.12.09948
MA0028.10.067163
MA0029.10.442582
MA0030.10.448261
MA0031.10.417663
MA0038.10.256813
MA0040.10.510947
MA0041.10.109446
MA0042.10.334544
MA0043.10.586618
MA0046.10.531807
MA0048.10.00730033
MA0050.10.180744
MA0051.10.263603
MA0052.10.518112
MA0055.10.136741
MA0056.10
MA0057.12.31008
MA0058.10.0984787
MA0059.10.105184
MA0060.10.0321237
MA0061.10.372144
MA0063.10
MA0066.10.248543
MA0067.10.817149
MA0068.10.0343014
MA0069.10.518414
MA0070.10.509795
MA0071.11.61449
MA0072.10.502282
MA0073.11.12814e-11
MA0074.10.222108
MA0076.10.285376
MA0077.10.48317
MA0078.10.289095
MA0081.10.118266
MA0083.10.585897
MA0084.11.1333
MA0087.11.34927
MA0088.10.00238225
MA0089.10
MA0090.10.416778
MA0091.10.491727
MA0092.10.417266
MA0093.10.0709755
MA0095.10
MA0098.10
MA0100.10.213782
MA0101.10.720996
MA0103.11.45318
MA0105.10.0133959
MA0106.11.45627
MA0107.10.0769078
MA0108.20.363107
MA0109.10
MA0111.11.39174
MA0113.10.273246
MA0114.10.0414319
MA0115.10.589161
MA0116.10.486423
MA0117.10.559943
MA0119.10.110503
MA0122.10.577888
MA0124.10.766819
MA0125.10.697415
MA0130.10
MA0131.10.340612
MA0132.10
MA0133.10
MA0135.10.619844
MA0136.10.666439
MA0139.10.0230855
MA0140.10.2137
MA0141.10.625596
MA0142.10.40532
MA0143.10.285913
MA0144.10.0425459
MA0145.10.0580487
MA0146.10.00382489
MA0147.10.0471319
MA0148.10.165681
MA0149.10.113293
MA0062.20.177624
MA0035.20.620478
MA0039.20.0214674
MA0138.20.334152
MA0002.20.472522
MA0137.20.0883456
MA0104.20.0278464
MA0047.20.256234
MA0112.23.16057
MA0065.20.254194
MA0150.10.145553
MA0151.10
MA0152.10.256315
MA0153.10.635107
MA0154.10.90272
MA0155.10.301849
MA0156.11.00164
MA0157.10.378326
MA0158.10
MA0159.10.190402
MA0160.10.968677
MA0161.10
MA0162.10.000145355
MA0163.10.000105786
MA0164.10.667063
MA0080.20.563938
MA0018.20.244112
MA0099.20.877027
MA0079.22.91993e-10
MA0102.21.18455
MA0258.10.145568
MA0259.10.0431217
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:372&oldid=2573767"