FFCP PHASE1:Hg19::chr1:180159606..180159619,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C3910|description=CAGE_peak_at_chr1:180159606..180159619,+|id=chr1:180159606..180159619,+|ontology_enrichment_celltype=CL:0000055!2.01e-12!180;CL:0000144!3.88e-11!625;CL:0000057!1.09e-10!75;CL:0002371!1.34e-09!591;CL:0000548!3.44e-09!679;CL:0000004!3.44e-09!679;CL:0000255!3.44e-09!679;CL:0000012!1.05e-08!682;CL:0000048!2.56e-07!430;CL:0000723!2.93e-07!436;CL:0000034!2.94e-07!444|ontology_enrichment_celltype_v019=CL:0000499;9.67e-12;28!CL:1000306;2.42e-08;4!CL:0002547;2.42e-08;4!CL:0002622;2.44e-07;3!CL:0000134;7.82e-07;55!CL:0000135;8.57e-07;3!CL:0000388;8.57e-07;3|ontology_enrichment_celltype_v019_2=CL:0000499,1.17e-11,28;CL:0000048,9.73e-10,427;CL:0000723,2.43e-09,433;CL:0000034,7.85e-09,441;CL:1000306,1.92e-08,4;CL:0002547,1.92e-08,4;CL:0000057,1.99e-07,76;CL:0002622,2.23e-07,3;CL:0002320,2.54e-07,361;CL:0000134,7.88e-07,354|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0004797;2.42e-08;4!UBERON:0000415;2.42e-08;4!UBERON:0007240;2.42e-08;4!UBERON:0005742;2.42e-08;4!UBERON:0005734;2.42e-08;4!UBERON:0004664;2.42e-08;4!UBERON:0004663;2.42e-08;4!UBERON:0002367;2.68e-08;11!UBERON:0010147;2.68e-08;11!UBERON:0003937;1.66e-07;12!UBERON:0005399;1.66e-07;12!UBERON:0007846;8.57e-07;3!UBERON:0000043;8.57e-07;3!UBERON:0007845;8.57e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0000415,1.92e-08,4;UBERON:0007240,1.92e-08,4;UBERON:0005742,1.92e-08,4;UBERON:0005734,1.92e-08,4;UBERON:0004664,1.92e-08,4;UBERON:0004663,1.92e-08,4;UBERON:0002367,3.56e-08,11;UBERON:0010147,3.56e-08,11;UBERON:0009846,3.56e-08,11;UBERON:0003353,3.56e-08,11;UBERON:0004902,3.56e-08,11;UBERON:0003820,3.56e-08,11;UBERON:0009847,3.56e-08,11;UBERON:0003937,2.15e-07,12;UBERON:0005399,2.15e-07,12;UBERON:0002384,3.61e-07,371|phase1_expression=0.54503513781167,1.2846031433459,0.281908808191942,0,0.893922188854576,1.74467704820074,0,0,0,0,4.88460817580699,0,0.263766978228454,0.866364470720326,1.65698687863958,0.672325146451775,0,1.46062018077475,0.487932798790507,0.246242116153576,0.816002764977012,0,0,0.547497700291537,0.251085279189606,0.0764134057479513,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0.581592955118259,0.377875943688809,0,1.39457422143411,0,0.309706370895104,0.28769239232215,1.2808035326455,0,0,0,0,0.376484679085209,0.272906150057846,0,1.22433556948361,0,0.639337125799041,0,0.398927315243264,0.426224750532694,0.870627715885752,0,0,0.502497330513487,1.0429658368404,0.217188844705117,0.605399502633369,0.368277635987565,0.949387162322653,0,0.212604299965044,0.209658645508376,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,2.68280343881454,0.511450247374121,6.14446559053763,0,3.91085601194224,0,4.86634870302636,0.0945348171640679,0.665188192387692,0.527008714158756,0.589405839739707,0,1.85392221392215,1.29818957461873,0.522389211897802,1.99436940778298,0,0,0,0.198762407366705,0,0,0,2.93649605346934,0.550236083880135,0,0,0.35576626268671,0.33472061276467,0,0,0.24406205754817,0,1.62028389576352,0.0892997282840798,0,0,0,0,0,0,0,0.436094052142534,1.49091585508596,1.51956613997496,1.45650098894541,4.87622255272983,2.12801029319014,0.560677600142307,0,2.4666754841716,0,0.404132016209064,0.163461903113459,0.302714855289863,0,0.234321431833797,0.936480230490962,0,1.04614076386261,0.352303495931295,0,0.140450806702248,0,0.491337269247072,0.516628905878827,2.37600571456411,6.42894016124248,0.910161361938026,2.15585442544872,0,0.125118519871964,0,0.438977620880838,1.5324389789951,0.901428353439581,0.567160915800105,1.79389635688862,0.427114777637135,0,3.00091096084402,0.515262646192195,1.54584324027377,0.558350568994769,0.337552664482532,0.292311015483596,0.504867548488229,0.184099797284599,0.161646056818812,1.06502877754984,0.503760491138201,0,0.193260853163297,0,0,0.365921118388786,0.132529768321485,0.232387885739037,0.10366105501537,0.504641701751257,0,0,1.92972281457866,0,1.39310378409594,5.0531563716871,0,0.337169380156203,0,0,0.435758888184812,0.474541238222193,0.404493924480493,0.392442930250692,0,0,0,0,5.88034845542168,0,0,0,0,0,0.171567810298526,0.439001141634502,0,0.201057944823262,0.462942225792648,0.325808305310325,1.03993478527958,1.44331342025273,0.34779121492523,0.234817388471643,0.144366447761074,0.925971025153221,0.380508304469197,0,0,0,0,0,0,0,0.850650583454319,0.179117045405697,0.290633938513962,0,0,0.088048434013226,0,0,0,0.063497894292169,0.381988425558278,0,0,0.308482478109971,0.600686115687835,0,0.112131084345361,0.43596006883328,0.1466765716419,0.258543431515556,0,0.845302752556,0,0,0.25720737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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C3910 | |||
|description=CAGE_peak_at_chr1:180159606..180159619,+ | |||
|id=chr1:180159606..180159619,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.01e-12!180;CL:0000144!3.88e-11!625;CL:0000057!1.09e-10!75;CL:0002371!1.34e-09!591;CL:0000548!3.44e-09!679;CL:0000004!3.44e-09!679;CL:0000255!3.44e-09!679;CL:0000012!1.05e-08!682;CL:0000048!2.56e-07!430;CL:0000723!2.93e-07!436;CL:0000034!2.94e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000499;9.67e-12;28!CL:1000306;2.42e-08;4!CL:0002547;2.42e-08;4!CL:0002622;2.44e-07;3!CL:0000134;7.82e-07;55!CL:0000135;8.57e-07;3!CL:0000388;8.57e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000499,1.17e-11,28;CL:0000048,9.73e-10,427;CL:0000723,2.43e-09,433;CL:0000034,7.85e-09,441;CL:1000306,1.92e-08,4;CL:0002547,1.92e-08,4;CL:0000057,1.99e-07,76;CL:0002622,2.23e-07,3;CL:0002320,2.54e-07,361;CL:0000134,7.88e-07,354 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004797;2.42e-08;4!UBERON:0000415;2.42e-08;4!UBERON:0007240;2.42e-08;4!UBERON:0005742;2.42e-08;4!UBERON:0005734;2.42e-08;4!UBERON:0004664;2.42e-08;4!UBERON:0004663;2.42e-08;4!UBERON:0002367;2.68e-08;11!UBERON:0010147;2.68e-08;11!UBERON:0003937;1.66e-07;12!UBERON:0005399;1.66e-07;12!UBERON:0007846;8.57e-07;3!UBERON:0000043;8.57e-07;3!UBERON:0007845;8.57e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000415,1.92e-08,4;UBERON:0007240,1.92e-08,4;UBERON:0005742,1.92e-08,4;UBERON:0005734,1.92e-08,4;UBERON:0004664,1.92e-08,4;UBERON:0004663,1.92e-08,4;UBERON:0002367,3.56e-08,11;UBERON:0010147,3.56e-08,11;UBERON:0009846,3.56e-08,11;UBERON:0003353,3.56e-08,11;UBERON:0004902,3.56e-08,11;UBERON:0003820,3.56e-08,11;UBERON:0009847,3.56e-08,11;UBERON:0003937,2.15e-07,12;UBERON:0005399,2.15e-07,12;UBERON:0002384,3.61e-07,371 | |||
|phase1_expression=0.54503513781167,1.2846031433459,0.281908808191942,0,0.893922188854576,1.74467704820074,0,0,0,0,4.88460817580699,0,0.263766978228454,0.866364470720326,1.65698687863958,0.672325146451775,0,1.46062018077475,0.487932798790507,0.246242116153576,0.816002764977012,0,0,0.547497700291537,0.251085279189606,0.0764134057479513,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0.581592955118259,0.377875943688809,0,1.39457422143411,0,0.309706370895104,0.28769239232215,1.2808035326455,0,0,0,0,0.376484679085209,0.272906150057846,0,1.22433556948361,0,0.639337125799041,0,0.398927315243264,0.426224750532694,0.870627715885752,0,0,0.502497330513487,1.0429658368404,0.217188844705117,0.605399502633369,0.368277635987565,0.949387162322653,0,0.212604299965044,0.209658645508376,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,2.68280343881454,0.511450247374121,6.14446559053763,0,3.91085601194224,0,4.86634870302636,0.0945348171640679,0.665188192387692,0.527008714158756,0.589405839739707,0,1.85392221392215,1.29818957461873,0.522389211897802,1.99436940778298,0,0,0,0.198762407366705,0,0,0,2.93649605346934,0.550236083880135,0,0,0.35576626268671,0.33472061276467,0,0,0.24406205754817,0,1.62028389576352,0.0892997282840798,0,0,0,0,0,0,0,0.436094052142534,1.49091585508596,1.51956613997496,1.45650098894541,4.87622255272983,2.12801029319014,0.560677600142307,0,2.4666754841716,0,0.404132016209064,0.163461903113459,0.302714855289863,0,0.234321431833797,0.936480230490962,0,1.04614076386261,0.352303495931295,0,0.140450806702248,0,0.491337269247072,0.516628905878827,2.37600571456411,6.42894016124248,0.910161361938026,2.15585442544872,0,0.125118519871964,0,0.438977620880838,1.5324389789951,0.901428353439581,0.567160915800105,1.79389635688862,0.427114777637135,0,3.00091096084402,0.515262646192195,1.54584324027377,0.558350568994769,0.337552664482532,0.292311015483596,0.504867548488229,0.184099797284599,0.161646056818812,1.06502877754984,0.503760491138201,0,0.193260853163297,0,0,0.365921118388786,0.132529768321485,0.232387885739037,0.10366105501537,0.504641701751257,0,0,1.92972281457866,0,1.39310378409594,5.0531563716871,0,0.337169380156203,0,0,0.435758888184812,0.474541238222193,0.404493924480493,0.392442930250692,0,0,0,0,5.88034845542168,0,0,0,0,0,0.171567810298526,0.439001141634502,0,0.201057944823262,0.462942225792648,0.325808305310325,1.03993478527958,1.44331342025273,0.34779121492523,0.234817388471643,0.144366447761074,0.925971025153221,0.380508304469197,0,0,0,0,0,0,0,0.850650583454319,0.179117045405697,0.290633938513962,0,0,0.088048434013226,0,0,0,0.063497894292169,0.381988425558278,0,0,0.308482478109971,0.600686115687835,0,0.112131084345361,0.43596006883328,0.1466765716419,0.258543431515556,0,0.845302752556,0,0,0.257207374262142,4.25547396069835,1.0656887160644,3.86040582876998,3.7983512377401,1.64648067356154,0.325736184293735,4.6200953336531,0.791951872933429,0.602878754119172,0,1.89948683245908,0,0,0,0.958499421966331,1.14861935834114,0,0.723906533337896,1.64381058040307,0,0.112085143993527,0,0,0,0,0,0,0.167516265334349,0,0,2.99161459204025,0.414415513436035,0.736148950314839,1.50051156317903,0.271265023699736,0.831883446123229,2.3195768543631,1.10391690523754,0.702848489956279,0.300946099727719,2.27407504055985,0,0,0.737476674166813,1.47702144595741,0.195801157462741,0,0,0.431428401637234,0.106727557803444,0,0,0.604780586659361,0.496215615637554,0,1.12264037773229,0.640695746278505,0,0.160853921143607,2.96836132889982,0.771048469013278,0.355123450626254,0.246381468041427,1.03850885836724,0.232420756919918,0,1.40354529212299,1.10497186723076,2.52591785962135,2.91345868810747,7.6052160676466,0.451199612907412,0.385076685522074,0.784349769176855,0,0.211103257785751,0,0.340187410553031,0,0,0.541892875087706,0,0,0,0.223874754722178,0,0,0.512900250232778,0,0.650756789328606,0.103041011647722,0.0915694648183434,0,0,0,0,0.096670718292122,0.154048617114644,0,0.275673144969061,0.107420244868274,0.725083469571143,0.255679882248303,0.0890320356467374,0.991709492165869,0.576570202095319,0,1.11273558941105,0,3.46293581513704,0,1.54016790088044,1.06461206063404,0,0.18532421910392,0.143124886741991,0,0.316379424718726,1.90630193923825,0.255897791311334,0.855877976067841,0,0,0.539617372749944,3.84351841630477,1.17812402345686,0,0,0,0.975267478179181,4.6305563029944,1.05650146756755,1.09199929126389,6.50464986987079,1.13008116620243,0,6.6343897524122,0.876901770507525,0.578775534266688,0.655894752046633,0,0.6196469961995,0.563391205064483,0,0.589494246078727,0.35667105148125,0.354761064070598,6.12212142363226,4.28083360847872,0,0.349934720244983,0,0,0,0.282431402330337,0.43050537267123,5.05414427002877,2.66058092122005,0.229723400206959,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0.199579371432817,0.191505370132367,0,0.649243880549111,0,0,0.3133597915460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| |||
|short_description=p@chr1:180159606..180159619,+ | |||
}} |
Revision as of 02:03, 12 September 2013
Short description: | p@chr1:180159606..180159619, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:180159606..180159619, + |
Coexpression cluster: | C3910_Mesenchymal_Smooth_Fibroblast_Hepatic_sacrococcigeal_Prostate_Alveolar |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stromal cell | 1.17e-11 | 28 |
multi fate stem cell | 9.73e-10 | 427 |
somatic stem cell | 2.43e-09 | 433 |
stem cell | 7.85e-09 | 441 |
fibroblast of tunica adventitia of artery | 1.92e-08 | 4 |
fibroblast of the aortic adventitia | 1.92e-08 | 4 |
fibroblast | 1.99e-07 | 76 |
prostate stromal cell | 2.23e-07 | 3 |
connective tissue cell | 2.54e-07 | 361 |
mesenchymal cell | 7.88e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
artery wall | 1.92e-08 | 4 |
tunica adventitia of artery | 1.92e-08 | 4 |
adventitia | 1.92e-08 | 4 |
tunica adventitia of blood vessel | 1.92e-08 | 4 |
aorta tunica adventitia | 1.92e-08 | 4 |
aorta wall | 1.92e-08 | 4 |
prostate gland | 3.56e-08 | 11 |
male accessory sex gland | 3.56e-08 | 11 |
embryonic cloacal epithelium | 3.56e-08 | 11 |
epithelium of hindgut | 3.56e-08 | 11 |
urogenital sinus epithelium | 3.56e-08 | 11 |
prostate bud | 3.56e-08 | 11 |
prostate field | 3.56e-08 | 11 |
sex gland | 2.15e-07 | 12 |
male reproductive gland | 2.15e-07 | 12 |
connective tissue | 3.61e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.