FFCP PHASE1:Hg19::chr1:218521292..218521297,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:218521292..218521297,+|id=chr1:218521292..218521297,+|ontology_enrichment_celltype=CL:0000243!3.58e-10!15;CL:0000125!3.58e-10!15;CL:0000030!3.58e-10!15;CL:0000339!3.58e-10!15;CL:0000095!1.59e-08!17;CL:0000123!1.59e-08!17|ontology_enrichment_celltype_v019=CL:0000064;1.18e-20;3!CL:0000067;1.18e-20;3!CL:0005012;1.18e-20;3!CL:0002304;1.18e-20;3!CL:0000322;2.74e-09;3|ontology_enrichment_celltype_v019_2=CL:0000064,1.19e-20,3;CL:0000067,1.19e-20,3;CL:0005012,1.19e-20,3;CL:0002304,1.19e-20,3;CL:0000322,3.54e-09,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3910;1.73e-13;2!DOID:3908;7.83e-12;5!DOID:3571;1.39e-07;1!DOID:3905;8.87e-07;9|ontology_enrichment_disease_v019_2=DOID:3910,2.54e-13,2;DOID:3908,1.10e-11,5;DOID:3571,2.80e-07,1|ontology_enrichment_uberon=UBERON:0000073!8.79e-13!94;UBERON:0001016!8.79e-13!94;UBERON:0000924!7.70e-12!173;UBERON:0006601!7.70e-12!173;UBERON:0004121!1.05e-11!169;UBERON:0005743!1.50e-11!86;UBERON:0000955!1.65e-11!69;UBERON:0006238!1.65e-11!69;UBERON:0000033!2.00e-11!123;UBERON:0001017!2.43e-11!82;UBERON:0000153!4.81e-11!129;UBERON:0007811!4.81e-11!129;UBERON:0002346!5.49e-11!90;UBERON:0003075!5.81e-11!86;UBERON:0007284!5.81e-11!86;UBERON:0001049!5.57e-10!57;UBERON:0005068!5.57e-10!57;UBERON:0006241!5.57e-10!57;UBERON:0007135!5.57e-10!57;UBERON:0000477!1.85e-09!286;UBERON:0002616!3.37e-09!59;UBERON:0000119!4.94e-08!312;UBERON:0003056!8.50e-08!61;UBERON:0004111!1.59e-07!241;UBERON:0000483!1.87e-07!309;UBERON:0002780!2.93e-07!41;UBERON:0001890!2.93e-07!41;UBERON:0006240!2.93e-07!41;UBERON:0000481!4.27e-07!347;UBERON:0003080!6.57e-07!42;UBERON:0000025!8.74e-07!194;UBERON:0001893!9.52e-07!34|ontology_enrichment_uberon_v019=UBERON:0001778;1.18e-20;3!UBERON:0001775;1.18e-20;3!UBERON:0000488;1.24e-15;4!UBERON:0004903;1.73e-13;2!UBERON:0002173;1.73e-13;2!UBERON:0002186;1.73e-13;2!UBERON:0002203;1.39e-10;6!UBERON:0001768;1.39e-10;6!UBERON:0002200;1.39e-10;6!UBERON:0004821;2.74e-09;3!UBERON:0007499;2.74e-09;3!UBERON:0003215;2.74e-09;3!UBERON:0010368;2.74e-09;3!UBERON:0009911;2.74e-09;3!UBERON:0002299;2.74e-09;3!UBERON:0006524;2.74e-09;3!UBERON:0008874;2.74e-09;3!UBERON:0002169;2.74e-09;3!UBERON:0004894;2.74e-09;3!UBERON:0007029;1.39e-07;1!UBERON:0002134;1.39e-07;1!UBERON:0002426;1.39e-07;1!UBERON:0003831;1.39e-07;1!UBERON:0003898;1.39e-07;1!UBERON:0004830;1.39e-07;1!UBERON:0005208;1.39e-07;1!UBERON:0003830;1.39e-07;1!UBERON:0005175;1.39e-07;1!UBERON:0001774;1.39e-07;1!UBERON:0004145;1.39e-07;1!UBERON:0005946;1.39e-07;1!UBERON:0001103;1.39e-07;1!UBERON:0005965;1.39e-07;1!UBERON:0002078;1.39e-07;1!UBERON:0009856;3.59e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.19e-20,3;UBERON:0001775,1.19e-20,3;UBERON:0000488,1.26e-15,4;UBERON:0004903,2.54e-13,2;UBERON:0002173,2.54e-13,2;UBERON:0002186,2.54e-13,2;UBERON:0002203,1.39e-10,6;UBERON:0001768,1.39e-10,6;UBERON:0002200,1.39e-10,6;UBERON:0004821,3.54e-09,3;UBERON:0003215,3.54e-09,3;UBERON:0010368,3.54e-09,3;UBERON:0009911,3.54e-09,3;UBERON:0002299,3.54e-09,3;UBERON:0006524,3.54e-09,3;UBERON:0008874,3.54e-09,3;UBERON:0002169,3.54e-09,3;UBERON:0004894,3.54e-09,3;UBERON:0007029,6.37e-08,1;UBERON:0002426,7.26e-08,1;UBERON:0003831,7.26e-08,1;UBERON:0003898,7.26e-08,1;UBERON:0004830,7.26e-08,1;UBERON:0003830,7.26e-08,1;UBERON:0005175,7.26e-08,1;UBERON:0001774,7.26e-08,1;UBERON:0001103,7.26e-08,1;UBERON:0010084,7.26e-08,1;UBERON:0002134,1.22e-07,1;UBERON:0005208,1.22e-07,1;UBERON:0005946,1.22e-07,1;UBERON:0005965,1.22e-07,1;UBERON:0002078,1.22e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0.123121058076788,0.204000691244253,0.626909442956176,0.572471974262113,0.684372125364421,1.38096903554283,0,0,0,0,0,0,0.919421224478927,0,0,0.232401601740905,0,0,1.10799081706375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0,0.361439152384566,0,0.144846518960824,0.795285947051099,0,2.45790524626576,2.66075276955077,3.51339142772504,0.196468613246569,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,1.45650098894541,0,0.354668382198357,0,0,0.24666754841716,0,0,0.163461903113459,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0.125118519871964,0.277064115484183,0.438977620880838,0.30648779579902,0.150238058906597,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0,0.0974370051611986,0,0,0,0.710019185033229,0,0,0,0.545492241181669,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,0,0,0.234817388471643,0,0,1.3317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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:218521292..218521297,+ | |||
|id=chr1:218521292..218521297,+ | |||
|ontology_enrichment_celltype=CL:0000243!3.58e-10!15;CL:0000125!3.58e-10!15;CL:0000030!3.58e-10!15;CL:0000339!3.58e-10!15;CL:0000095!1.59e-08!17;CL:0000123!1.59e-08!17 | |||
|ontology_enrichment_celltype_v019=CL:0000064;1.18e-20;3!CL:0000067;1.18e-20;3!CL:0005012;1.18e-20;3!CL:0002304;1.18e-20;3!CL:0000322;2.74e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,1.19e-20,3;CL:0000067,1.19e-20,3;CL:0005012,1.19e-20,3;CL:0002304,1.19e-20,3;CL:0000322,3.54e-09,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3910;1.73e-13;2!DOID:3908;7.83e-12;5!DOID:3571;1.39e-07;1!DOID:3905;8.87e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,2.54e-13,2;DOID:3908,1.10e-11,5;DOID:3571,2.80e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000073!8.79e-13!94;UBERON:0001016!8.79e-13!94;UBERON:0000924!7.70e-12!173;UBERON:0006601!7.70e-12!173;UBERON:0004121!1.05e-11!169;UBERON:0005743!1.50e-11!86;UBERON:0000955!1.65e-11!69;UBERON:0006238!1.65e-11!69;UBERON:0000033!2.00e-11!123;UBERON:0001017!2.43e-11!82;UBERON:0000153!4.81e-11!129;UBERON:0007811!4.81e-11!129;UBERON:0002346!5.49e-11!90;UBERON:0003075!5.81e-11!86;UBERON:0007284!5.81e-11!86;UBERON:0001049!5.57e-10!57;UBERON:0005068!5.57e-10!57;UBERON:0006241!5.57e-10!57;UBERON:0007135!5.57e-10!57;UBERON:0000477!1.85e-09!286;UBERON:0002616!3.37e-09!59;UBERON:0000119!4.94e-08!312;UBERON:0003056!8.50e-08!61;UBERON:0004111!1.59e-07!241;UBERON:0000483!1.87e-07!309;UBERON:0002780!2.93e-07!41;UBERON:0001890!2.93e-07!41;UBERON:0006240!2.93e-07!41;UBERON:0000481!4.27e-07!347;UBERON:0003080!6.57e-07!42;UBERON:0000025!8.74e-07!194;UBERON:0001893!9.52e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;1.18e-20;3!UBERON:0001775;1.18e-20;3!UBERON:0000488;1.24e-15;4!UBERON:0004903;1.73e-13;2!UBERON:0002173;1.73e-13;2!UBERON:0002186;1.73e-13;2!UBERON:0002203;1.39e-10;6!UBERON:0001768;1.39e-10;6!UBERON:0002200;1.39e-10;6!UBERON:0004821;2.74e-09;3!UBERON:0007499;2.74e-09;3!UBERON:0003215;2.74e-09;3!UBERON:0010368;2.74e-09;3!UBERON:0009911;2.74e-09;3!UBERON:0002299;2.74e-09;3!UBERON:0006524;2.74e-09;3!UBERON:0008874;2.74e-09;3!UBERON:0002169;2.74e-09;3!UBERON:0004894;2.74e-09;3!UBERON:0007029;1.39e-07;1!UBERON:0002134;1.39e-07;1!UBERON:0002426;1.39e-07;1!UBERON:0003831;1.39e-07;1!UBERON:0003898;1.39e-07;1!UBERON:0004830;1.39e-07;1!UBERON:0005208;1.39e-07;1!UBERON:0003830;1.39e-07;1!UBERON:0005175;1.39e-07;1!UBERON:0001774;1.39e-07;1!UBERON:0004145;1.39e-07;1!UBERON:0005946;1.39e-07;1!UBERON:0001103;1.39e-07;1!UBERON:0005965;1.39e-07;1!UBERON:0002078;1.39e-07;1!UBERON:0009856;3.59e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.19e-20,3;UBERON:0001775,1.19e-20,3;UBERON:0000488,1.26e-15,4;UBERON:0004903,2.54e-13,2;UBERON:0002173,2.54e-13,2;UBERON:0002186,2.54e-13,2;UBERON:0002203,1.39e-10,6;UBERON:0001768,1.39e-10,6;UBERON:0002200,1.39e-10,6;UBERON:0004821,3.54e-09,3;UBERON:0003215,3.54e-09,3;UBERON:0010368,3.54e-09,3;UBERON:0009911,3.54e-09,3;UBERON:0002299,3.54e-09,3;UBERON:0006524,3.54e-09,3;UBERON:0008874,3.54e-09,3;UBERON:0002169,3.54e-09,3;UBERON:0004894,3.54e-09,3;UBERON:0007029,6.37e-08,1;UBERON:0002426,7.26e-08,1;UBERON:0003831,7.26e-08,1;UBERON:0003898,7.26e-08,1;UBERON:0004830,7.26e-08,1;UBERON:0003830,7.26e-08,1;UBERON:0005175,7.26e-08,1;UBERON:0001774,7.26e-08,1;UBERON:0001103,7.26e-08,1;UBERON:0010084,7.26e-08,1;UBERON:0002134,1.22e-07,1;UBERON:0005208,1.22e-07,1;UBERON:0005946,1.22e-07,1;UBERON:0005965,1.22e-07,1;UBERON:0002078,1.22e-07,1 | |||
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| |||
|short_description=p@chr1:218521292..218521297,+ | |||
}} |
Revision as of 03:41, 12 September 2013
Short description: | p@chr1:218521292..218521297, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:218521292..218521297, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 1.19e-20 | 3 |
ciliated epithelial cell | 1.19e-20 | 3 |
multi-ciliated epithelial cell | 1.19e-20 | 3 |
non-pigmented ciliary epithelial cell | 1.19e-20 | 3 |
pneumocyte | 3.54e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 1.19e-20 | 3 |
ciliary body | 1.19e-20 | 3 |
atypical epithelium | 1.26e-15 | 4 |
bronchoalveolar duct junction | 2.54e-13 | 2 |
alveolar duct | 2.54e-13 | 2 |
bronchiole | 2.54e-13 | 2 |
vasculature of eye | 1.39e-10 | 6 |
uvea | 1.39e-10 | 6 |
vasculature of head | 1.39e-10 | 6 |
pulmonary alveolus epithelium | 3.54e-09 | 3 |
alveolus | 3.54e-09 | 3 |
pulmonary lobule | 3.54e-09 | 3 |
lobule | 3.54e-09 | 3 |
alveolus of lung | 3.54e-09 | 3 |
alveolar system | 3.54e-09 | 3 |
pulmonary acinus | 3.54e-09 | 3 |
alveolar sac | 3.54e-09 | 3 |
alveolar wall | 3.54e-09 | 3 |
surface | 6.37e-08 | 1 |
chest muscle | 7.26e-08 | 1 |
respiratory system muscle | 7.26e-08 | 1 |
skeletal muscle of trunk | 7.26e-08 | 1 |
respiratory system skeletal muscle | 7.26e-08 | 1 |
thoracic segment muscle | 7.26e-08 | 1 |
chest organ | 7.26e-08 | 1 |
muscle of trunk | 7.26e-08 | 1 |
diaphragm | 7.26e-08 | 1 |
future diaphragm | 7.26e-08 | 1 |
tricuspid valve | 1.22e-07 | 1 |
right atrium valve | 1.22e-07 | 1 |
outflow tract of atrium | 1.22e-07 | 1 |
outflow part of right atrium | 1.22e-07 | 1 |
right cardiac atrium | 1.22e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 2.54e-13 | 2 |
non-small cell lung carcinoma | 1.10e-11 | 5 |
liver cancer | 2.80e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.