FFCP PHASE1:Hg19::chr12:102455876..102455889,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51019|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24256|TSSclassifier=S|UniProt=Q9Y3C0|association_with_transcript=9bp_to_NM_016053,uc010svw.1,uc010svx.1,uc010svy.1,uc010svz.1_5end|coexpression_cluster_id=C1|description=CAGE_peak_3_at_CCDC53_5end|id=chr12:102455876..102455889,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000511;2.46e-12;1!CL:0002625;2.46e-12;1!CL:0000222;2.46e-12;1!CL:0000216;2.46e-12;1!CL:0000319;2.46e-12;1!CL:0000039;2.69e-07;7!CL:0000586;2.69e-07;7!CL:0000159;8.52e-07;2|ontology_enrichment_celltype_v019_2=CL:0000511,1.25e-12,1;CL:0002625,1.25e-12,1;CL:0000216,1.25e-12,1;CL:0000319,2.20e-12,1;CL:0000039,2.77e-07,7;CL:0000586,2.77e-07,7;CL:0000159,8.06e-07,2|ontology_enrichment_development_v019=UBERON:0009117;7.07e-11;10!UBERON:0005564;7.07e-11;10!UBERON:0010122;5.41e-07;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0050619;2.46e-12;1!DOID:3030;2.46e-12;1!DOID:1357;2.46e-12;1!DOID:4362;9.69e-10;5|ontology_enrichment_disease_v019_2=DOID:0050619,1.57e-12,1;DOID:1357,1.57e-12,1;DOID:3030,2.20e-12,1;DOID:4362,1.21e-09,5|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000473;7.48e-23;8!UBERON:0003135;1.05e-16;11!UBERON:0001136;2.46e-12;1!UBERON:0001343;2.46e-12;1!UBERON:0001764;2.46e-12;1!UBERON:0001825;2.46e-12;1!UBERON:0004910;2.46e-12;1!UBERON:0004813;2.46e-12;1!UBERON:0000991;7.42e-09;21!UBERON:0003101;1.84e-08;22!UBERON:0000079;1.84e-08;22!UBERON:0000002;2.91e-08;6!UBERON:0001560;2.91e-08;6!UBERON:0001873;5.41e-07;2!UBERON:0004909;8.52e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.36e-23,8;UBERON:0003135,8.24e-17,11;UBERON:0001136,1.25e-12,1;UBERON:0001343,1.25e-12,1;UBERON:0004910,1.25e-12,1;UBERON:0005154,1.25e-12,1;UBERON:0005295,1.25e-12,1;UBERON:0004813,1.25e-12,1;UBERON:0005297,1.25e-12,1;UBERON:0005294,1.25e-12,1;UBERON:0010141,1.25e-12,1;UBERON:0005891,1.25e-12,1;UBERON:0001764,1.57e-12,1;UBERON:0001825,1.57e-12,1;UBERON:0000991,6.56e-09,21;UBERON:0009196,6.56e-09,21;UBERON:0009117,6.56e-09,21;UBERON:0005564,6.56e-09,21;UBERON:0004176,1.64e-08,22;UBERON:0003101,1.64e-08,22;UBERON:0000079,1.64e-08,22;UBERON:0000002,3.50e-08,6;UBERON:0001560,3.50e-08,6;UBERON:0003133,5.01e-08,48;UBERON:0001873,5.41e-07,2;UBERON:0010122,5.41e-07,2;UBERON:0004909,6.07e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0.975865597581014,0.123121058076788,0.204000691244253,0,0,0.273748850145768,0.251085279189606,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0.284338464974843,0.293600439334847,0.553995408531877,0.200544447470142,0.434021741431704,0.223915474239924,0,0,0.145398238779565,0,0,0,0.822335776043652,0,0,0.768482119587302,0,0,0,0,0,0,0.224723484445085,0,0.641858054152187,0.639337125799041,0.659702600373432,0,0,0.290209238628584,0,0,0,0,0,0,0,0.632924774881769,0,0.212604299965044,0,0,0.150176892841506,0.16072558669708,0,0.19891667719909,0.547992461293902,0,1.09227722252426,0,0.426730222566507,0,1.14950487990897,0,0,0,0,0,0,0,0.526768169550154,0.196709770113833,0.393010762749165,0.205601498999509,0,0.32592226663359,0,0,0.111410456885174,0.294605907474837,0,0,0.128091319725675,0,0.328875809207352,0,0,0.14828656316206,0.267540828089713,0,0.226618685395132,0,0.34362744548263,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0.144824403882799,0,0.670700859703636,0.12786256184353,0,0.50133791063589,0,0,0.486634870302636,0.0945348171640679,0.443458794925128,0,6.7454223881322,0,0,0,0,0,0,0.571994910780128,0.371457501329565,0.39752481473341,0,0.347140501607594,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0.17859945656816,0.22452937262617,0,0,0,0,0,0,0,0,0.25326102332916,0,0,0.354668382198357,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0.312160076830321,0,0,0.23486899728753,0,0.140450806702248,0.408308342509787,0.368502951935304,0.103325781175765,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0,0,0.453728732640084,0,0,0.635795703478686,0,0.206105058476878,0,0,0.337552664482532,0.0974370051611986,0,0.184099797284599,0,0.355009592516614,0,0.169560592310488,0,0,0,0.121973706129595,0,0.232387885739037,0.10366105501537,0,0,0,0,0,0.928735856063958,0,0,0.168584690078102,0.241011029883482,0.220587945464788,0,0,0,0,0.38474715694639,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0,0.219500570817251,0,0.100528972411631,0,0.325808305310325,0,0,0.463721619900307,0,0.144366447761074,0,0.190254152234598,0.790204397959275,0,0,0.234004265139238,0.297262324577456,0,0,0,0.358234090811393,0,0,0,0.176096868026452,0.207328115540772,0,0,0.380987365753014,0,0,0,0.205654985406647,0,0,0,0,0.07333828582095,0.258543431515556,0,0,0.26593811658487,0,0,0,0.266422179016099,0.285955987316295,0,0,0,0,0.791951872933429,0.301439377059586,0,0.499864955910285,0,1.00451418286425,0,0.239624855491583,0,0,0.289562613335158,0,0,0,0,0.215627574859517,0.256686072559497,0.508189248444927,0,0,0.167516265334349,0.637938751653163,0,0,1.24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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51019 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24256 | |||
|TSSclassifier=S | |||
|UniProt=Q9Y3C0 | |||
|association_with_transcript=9bp_to_NM_016053,uc010svw.1,uc010svx.1,uc010svy.1,uc010svz.1_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_CCDC53_5end | |||
|id=chr12:102455876..102455889,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000511;2.46e-12;1!CL:0002625;2.46e-12;1!CL:0000222;2.46e-12;1!CL:0000216;2.46e-12;1!CL:0000319;2.46e-12;1!CL:0000039;2.69e-07;7!CL:0000586;2.69e-07;7!CL:0000159;8.52e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,1.25e-12,1;CL:0002625,1.25e-12,1;CL:0000216,1.25e-12,1;CL:0000319,2.20e-12,1;CL:0000039,2.77e-07,7;CL:0000586,2.77e-07,7;CL:0000159,8.06e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.07e-11;10!UBERON:0005564;7.07e-11;10!UBERON:0010122;5.41e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0050619;2.46e-12;1!DOID:3030;2.46e-12;1!DOID:1357;2.46e-12;1!DOID:4362;9.69e-10;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,1.57e-12,1;DOID:1357,1.57e-12,1;DOID:3030,2.20e-12,1;DOID:4362,1.21e-09,5 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;7.48e-23;8!UBERON:0003135;1.05e-16;11!UBERON:0001136;2.46e-12;1!UBERON:0001343;2.46e-12;1!UBERON:0001764;2.46e-12;1!UBERON:0001825;2.46e-12;1!UBERON:0004910;2.46e-12;1!UBERON:0004813;2.46e-12;1!UBERON:0000991;7.42e-09;21!UBERON:0003101;1.84e-08;22!UBERON:0000079;1.84e-08;22!UBERON:0000002;2.91e-08;6!UBERON:0001560;2.91e-08;6!UBERON:0001873;5.41e-07;2!UBERON:0004909;8.52e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.36e-23,8;UBERON:0003135,8.24e-17,11;UBERON:0001136,1.25e-12,1;UBERON:0001343,1.25e-12,1;UBERON:0004910,1.25e-12,1;UBERON:0005154,1.25e-12,1;UBERON:0005295,1.25e-12,1;UBERON:0004813,1.25e-12,1;UBERON:0005297,1.25e-12,1;UBERON:0005294,1.25e-12,1;UBERON:0010141,1.25e-12,1;UBERON:0005891,1.25e-12,1;UBERON:0001764,1.57e-12,1;UBERON:0001825,1.57e-12,1;UBERON:0000991,6.56e-09,21;UBERON:0009196,6.56e-09,21;UBERON:0009117,6.56e-09,21;UBERON:0005564,6.56e-09,21;UBERON:0004176,1.64e-08,22;UBERON:0003101,1.64e-08,22;UBERON:0000079,1.64e-08,22;UBERON:0000002,3.50e-08,6;UBERON:0001560,3.50e-08,6;UBERON:0003133,5.01e-08,48;UBERON:0001873,5.41e-07,2;UBERON:0010122,5.41e-07,2;UBERON:0004909,6.07e-07,2 | |||
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| |||
|short_description=p3@CCDC53 | |||
}} |
Revision as of 20:27, 10 September 2013
Short description: | p3@CCDC53 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CCDC53_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 9bp_to_NM_016053, uc010svw.1, uc010svx.1, uc010svy.1, uc010svz.1_5end |
EntrezGene: | CCDC53 |
HGNC: | 24256 |
UniProt: | Q9Y3C0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 1.25e-12 | 1 |
seminiferous tubule epithelial cell | 1.25e-12 | 1 |
Sertoli cell | 1.25e-12 | 1 |
mucus secreting cell | 2.20e-12 | 1 |
germ line cell | 2.77e-07 | 7 |
germ cell | 2.77e-07 | 7 |
seromucus secreting cell | 8.06e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
testis | 5.36e-23 | 8 |
male reproductive organ | 8.24e-17 | 11 |
mesothelium | 1.25e-12 | 1 |
seminiferous tubule of testis | 1.25e-12 | 1 |
epithelium of male gonad | 1.25e-12 | 1 |
epithelial cord | 1.25e-12 | 1 |
sex cord | 1.25e-12 | 1 |
seminiferous tubule epithelium | 1.25e-12 | 1 |
testis sex cord | 1.25e-12 | 1 |
genital ridge | 1.25e-12 | 1 |
primitive sex cord of indifferent gonad | 1.25e-12 | 1 |
coelomic epithelium | 1.25e-12 | 1 |
maxillary sinus | 1.57e-12 | 1 |
paranasal sinus | 1.57e-12 | 1 |
gonad | 6.56e-09 | 21 |
indifferent external genitalia | 6.56e-09 | 21 |
indifferent gonad | 6.56e-09 | 21 |
gonad primordium | 6.56e-09 | 21 |
external genitalia | 1.64e-08 | 22 |
male organism | 1.64e-08 | 22 |
male reproductive system | 1.64e-08 | 22 |
uterine cervix | 3.50e-08 | 6 |
neck of organ | 3.50e-08 | 6 |
reproductive organ | 5.01e-08 | 48 |
caudate nucleus | 5.41e-07 | 2 |
future caudate nucleus | 5.41e-07 | 2 |
epithelium of gonad | 6.07e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 1.57e-12 | 1 |
maxillary sinus cancer | 1.57e-12 | 1 |
mucinous adenocarcinoma | 2.20e-12 | 1 |
cervical cancer | 1.21e-09 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.