FFCP PHASE1:Hg19::chr17:6347729..6347756,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54478|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25483|TSSclassifier=S|UniProt=Q9BSJ6|association_with_transcript=0bp_to_NM_001195228,NM_019013_5end|description=CAGE_peak_2_at_FAM64A_5end|id=chr17:6347729..6347756,+|ontology_enrichment_celltype=CL:0000066!1.07e-23!254;CL:0002321!5.64e-23!248;CL:0000548!4.65e-22!679;CL:0000004!4.65e-22!679;CL:0000255!4.65e-22!679;CL:0000220!4.71e-22!246;CL:0000012!1.32e-21!682;CL:0000055!2.51e-21!180;CL:0000133!1.32e-13!59;CL:0000003!1.68e-12!722;CL:0000221!8.40e-12!71;CL:0000333!9.11e-12!41;CL:0000222!7.32e-11!119;CL:0000144!3.12e-10!625;CL:0002319!9.74e-10!25;CL:0002078!1.80e-07!44;CL:0000057!1.83e-07!75;CL:1000497!2.20e-07!18;CL:0002518!2.20e-07!18;CL:0002371!3.57e-07!591;CL:1000449!4.29e-07!16;CL:0000095!5.86e-07!17;CL:0000123!5.86e-07!17;CL:0000213!9.36e-07!57;CL:0000215!9.36e-07!57|ontology_enrichment_celltype_v019=CL:0002319;7.03e-10;25!CL:1000497;8.44e-09;17!CL:0002518;8.44e-09;17!CL:1000449;1.28e-08;15!CL:0000095;5.75e-07;17!CL:0002681;6.57e-07;12!CL:0002584;6.57e-07;12!CL:1000507;6.63e-07;10!CL:1000494;6.63e-07;10|ontology_enrichment_celltype_v019_2=CL:0000066,1.73e-21,253;CL:0002321,5.87e-20,250;CL:0000133,2.87e-13,59;CL:0000333,7.16e-12,41;CL:0000221,1.33e-10,72;CL:0002319,7.10e-10,25;CL:0000222,1.14e-09,121;CL:1000497,7.43e-09,17;CL:0002518,7.43e-09,17;CL:1000449,1.30e-08,15;CL:0002078,1.08e-07,45;CL:0000095,6.04e-07,17;CL:0000123,6.04e-07,17;CL:0002681,6.25e-07,12;CL:0002584,6.25e-07,12;CL:1000507,7.58e-07,10;CL:1000494,7.58e-07,10|ontology_enrichment_development_v019=CL:0000133;2.11e-07;59|ontology_enrichment_disease=DOID:162!4.94e-14!235;DOID:0050687!5.09e-14!143;DOID:14566!1.14e-13!239;DOID:305!6.59e-11!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:162,1.36e-13,235;DOID:14566,4.45e-13,239;DOID:0050687,6.01e-13,143;DOID:305,1.42e-10,106|ontology_enrichment_uberon=UBERON:0003104!3.70e-09!238;UBERON:0009142!3.70e-09!238;UBERON:0005256!2.88e-07!143;UBERON:0004211!4.29e-07!16;UBERON:0001285!4.29e-07!16;UBERON:0007684!4.29e-07!16;UBERON:0003220!4.29e-07!16;UBERON:0004208!4.29e-07!16;UBERON:0000490!5.49e-07!138;UBERON:0003914!8.39e-07!118;UBERON:0000487!9.28e-07!22|ontology_enrichment_uberon_v019=UBERON:0006555;1.28e-08;15!UBERON:0004819;1.28e-08;15!UBERON:0001285;1.28e-08;15!UBERON:0007684;1.28e-08;15!UBERON:0002113;4.52e-08;24!UBERON:0011143;4.52e-08;24!UBERON:0001851;3.67e-07;15!UBERON:0000487;4.26e-07;22!UBERON:0000353;5.26e-07;15!UBERON:0001225;6.57e-07;12!UBERON:0008987;6.57e-07;12!UBERON:0004211;6.63e-07;10!UBERON:0009773;6.63e-07;10!UBERON:0001231;6.63e-07;10!UBERON:0004810;6.63e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.30e-08,15;UBERON:0009773,1.30e-08,15;UBERON:0001231,1.30e-08,15;UBERON:0001285,1.30e-08,15;UBERON:0007684,1.30e-08,15;UBERON:0004208,1.30e-08,15;UBERON:0006555,1.44e-07,16;UBERON:0004819,1.44e-07,16;UBERON:0001851,3.70e-07,15;UBERON:0000487,4.59e-07,22;UBERON:0000353,4.93e-07,15;UBERON:0000490,6.24e-07,148;UBERON:0001225,6.25e-07,12;UBERON:0008987,6.25e-07,12;UBERON:0004810,7.58e-07,10|phase1_expression=0,0.428201047781966,0,0,0,0.872338524100369,0,0,0.261185628199839,14.7440361900905,16.0494268633658,8.51921351307672,5.80287352102598,1.8564952944007,1.65698687863958,0.672325146451775,0.602694528023977,0,0.975865597581014,11.9427426334484,12.6480428571437,9.40364164434263,17.4603952149945,23.1317778373174,19.8357370559788,3.66784347590166,3.44822475689772,3.38456359648821,0,0,0.928896739896456,2.75826367343678,4.51808878167375,1.84877005083394,0,0,2.05520307534393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.68737718685108,0,0,0,1.33749196312542,0,0,0,1.44833593950726,0,0,0,1.79327847615945,1.04047478047903,2.95988228286617,4.14525026678773,2.89803085735052,0,0,0,2.15287751125376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69490601792545,7.1603034632377,8.31310050484502,2.00535164254356,2.462390822334,0.795285947051099,2.43317435151318,10.3988298880475,5.09977614163897,6.0606002128257,0.0654895377488563,4.37154345951051,7.78647329847302,0,0,0,0,0,0,6.95668425783468,8.60234595106124,4.51282652089873,6.21838736116411,5.03399323451887,7.15306909044175,10.6587432933773,1.29208379584664,0.71153252537342,0,2.41697590265488,3.80136052859256,3.66093086322254,5.8826092855339,3.24056779152704,11.0731663072259,11.2264686313085,8.44586103624917,9.19899824795299,8.54339093611316,10.0760959161724,0,0,4.36094052142534,0.496971951695318,6.96467814155189,0,4.30254931123221,7.4480360261655,5.60677600142307,4.2699598291882,2.96001058100592,1.8672662123986,3.23305612967251,8.50001896189985,1.81628913173918,0.576175924479999,11.7160715916898,2.18512053781224,8.55707732316674,2.39117888882882,8.92502189692613,7.76990132967031,9.97200727585964,3.26646674007829,24.0755261931065,1.13658359293342,3.56400857184616,2.96720315134268,1.82032272387605,2.87447256726495,19.0219808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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54478 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25483 | |||
|TSSclassifier=S | |||
|UniProt=Q9BSJ6 | |||
|association_with_transcript=0bp_to_NM_001195228,NM_019013_5end | |||
|description=CAGE_peak_2_at_FAM64A_5end | |||
|id=chr17:6347729..6347756,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.07e-23!254;CL:0002321!5.64e-23!248;CL:0000548!4.65e-22!679;CL:0000004!4.65e-22!679;CL:0000255!4.65e-22!679;CL:0000220!4.71e-22!246;CL:0000012!1.32e-21!682;CL:0000055!2.51e-21!180;CL:0000133!1.32e-13!59;CL:0000003!1.68e-12!722;CL:0000221!8.40e-12!71;CL:0000333!9.11e-12!41;CL:0000222!7.32e-11!119;CL:0000144!3.12e-10!625;CL:0002319!9.74e-10!25;CL:0002078!1.80e-07!44;CL:0000057!1.83e-07!75;CL:1000497!2.20e-07!18;CL:0002518!2.20e-07!18;CL:0002371!3.57e-07!591;CL:1000449!4.29e-07!16;CL:0000095!5.86e-07!17;CL:0000123!5.86e-07!17;CL:0000213!9.36e-07!57;CL:0000215!9.36e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002319;7.03e-10;25!CL:1000497;8.44e-09;17!CL:0002518;8.44e-09;17!CL:1000449;1.28e-08;15!CL:0000095;5.75e-07;17!CL:0002681;6.57e-07;12!CL:0002584;6.57e-07;12!CL:1000507;6.63e-07;10!CL:1000494;6.63e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.73e-21,253;CL:0002321,5.87e-20,250;CL:0000133,2.87e-13,59;CL:0000333,7.16e-12,41;CL:0000221,1.33e-10,72;CL:0002319,7.10e-10,25;CL:0000222,1.14e-09,121;CL:1000497,7.43e-09,17;CL:0002518,7.43e-09,17;CL:1000449,1.30e-08,15;CL:0002078,1.08e-07,45;CL:0000095,6.04e-07,17;CL:0000123,6.04e-07,17;CL:0002681,6.25e-07,12;CL:0002584,6.25e-07,12;CL:1000507,7.58e-07,10;CL:1000494,7.58e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000133;2.11e-07;59 | |||
|ontology_enrichment_disease=DOID:162!4.94e-14!235;DOID:0050687!5.09e-14!143;DOID:14566!1.14e-13!239;DOID:305!6.59e-11!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.36e-13,235;DOID:14566,4.45e-13,239;DOID:0050687,6.01e-13,143;DOID:305,1.42e-10,106 | |||
|ontology_enrichment_uberon=UBERON:0003104!3.70e-09!238;UBERON:0009142!3.70e-09!238;UBERON:0005256!2.88e-07!143;UBERON:0004211!4.29e-07!16;UBERON:0001285!4.29e-07!16;UBERON:0007684!4.29e-07!16;UBERON:0003220!4.29e-07!16;UBERON:0004208!4.29e-07!16;UBERON:0000490!5.49e-07!138;UBERON:0003914!8.39e-07!118;UBERON:0000487!9.28e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.28e-08;15!UBERON:0004819;1.28e-08;15!UBERON:0001285;1.28e-08;15!UBERON:0007684;1.28e-08;15!UBERON:0002113;4.52e-08;24!UBERON:0011143;4.52e-08;24!UBERON:0001851;3.67e-07;15!UBERON:0000487;4.26e-07;22!UBERON:0000353;5.26e-07;15!UBERON:0001225;6.57e-07;12!UBERON:0008987;6.57e-07;12!UBERON:0004211;6.63e-07;10!UBERON:0009773;6.63e-07;10!UBERON:0001231;6.63e-07;10!UBERON:0004810;6.63e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.30e-08,15;UBERON:0009773,1.30e-08,15;UBERON:0001231,1.30e-08,15;UBERON:0001285,1.30e-08,15;UBERON:0007684,1.30e-08,15;UBERON:0004208,1.30e-08,15;UBERON:0006555,1.44e-07,16;UBERON:0004819,1.44e-07,16;UBERON:0001851,3.70e-07,15;UBERON:0000487,4.59e-07,22;UBERON:0000353,4.93e-07,15;UBERON:0000490,6.24e-07,148;UBERON:0001225,6.25e-07,12;UBERON:0008987,6.25e-07,12;UBERON:0004810,7.58e-07,10 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0.872338524100369,0,0,0.261185628199839,14.7440361900905,16.0494268633658,8.51921351307672,5.80287352102598,1.8564952944007,1.65698687863958,0.672325146451775,0.602694528023977,0,0.975865597581014,11.9427426334484,12.6480428571437,9.40364164434263,17.4603952149945,23.1317778373174,19.8357370559788,3.66784347590166,3.44822475689772,3.38456359648821,0,0,0.928896739896456,2.75826367343678,4.51808878167375,1.84877005083394,0,0,2.05520307534393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.68737718685108,0,0,0,1.33749196312542,0,0,0,1.44833593950726,0,0,0,1.79327847615945,1.04047478047903,2.95988228286617,4.14525026678773,2.89803085735052,0,0,0,2.15287751125376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69490601792545,7.1603034632377,8.31310050484502,2.00535164254356,2.462390822334,0.795285947051099,2.43317435151318,10.3988298880475,5.09977614163897,6.0606002128257,0.0654895377488563,4.37154345951051,7.78647329847302,0,0,0,0,0,0,6.95668425783468,8.60234595106124,4.51282652089873,6.21838736116411,5.03399323451887,7.15306909044175,10.6587432933773,1.29208379584664,0.71153252537342,0,2.41697590265488,3.80136052859256,3.66093086322254,5.8826092855339,3.24056779152704,11.0731663072259,11.2264686313085,8.44586103624917,9.19899824795299,8.54339093611316,10.0760959161724,0,0,4.36094052142534,0.496971951695318,6.96467814155189,0,4.30254931123221,7.4480360261655,5.60677600142307,4.2699598291882,2.96001058100592,1.8672662123986,3.23305612967251,8.50001896189985,1.81628913173918,0.576175924479999,11.7160715916898,2.18512053781224,8.55707732316674,2.39117888882882,8.92502189692613,7.76990132967031,9.97200727585964,3.26646674007829,24.0755261931065,1.13658359293342,3.56400857184616,2.96720315134268,1.82032272387605,2.87447256726495,19.0219808768095,10.8853112288609,2.77064115484183,7.46261955497424,8.27517048657353,3.30523729594513,15.8805056424029,6.81680615617675,0.640672166455702,2.7551147150743,9.00273288253207,3.91599611106068,1.54584324027377,0.558350568994769,8.60759294430458,5.94365731483312,5.3011092591264,0.644349290496095,0.969876340912871,4.26011511019937,6.34738218834134,11.6996808694236,0.57978255948989,2.18196896472668,0.860413786167011,14.5148710294219,17.0963401134716,14.4080489158203,12.5429876568598,12.868363394657,25.9133924943839,3.12899064659632,1.92972281457866,8.28809528114883,0,0.721879481669586,11.7123732039445,12.3066823757014,13.496617673475,12.6838068642253,10.6760927605279,10.9144484791104,11.460661193614,11.5770664423954,11.1576675514453,5.16708818237254,9.81692416624121,3.2925920906512,7.3504355692771,0,0,1.18157981336281,11.0365774853663,2.45976877086227,5.49016992955282,0.439001141634502,3.37205259772859,5.93120937228622,2.77765335475589,15.3129903495853,6.23960871167747,4.3299402607582,5.56465943880369,0.821860859650752,4.18662698507114,8.33373922637899,4.18559134916116,11.0628615714299,5.15091697256924,0.246217006087397,0.936017060556951,4.45893486866185,0,0.335964256397719,0.992425680696705,4.92571874865666,5.81267877027924,15.7186898457737,0.985326475791887,2.81754988842323,0.414656231081544,0.288239906833923,0,7.68324520935245,9.54971063895694,16.4104426094066,11.9750712215894,7.40357947463929,14.416466776508,2.5724378936752,10.5403219284639,2.61576041299968,10.7807280156797,0.129271715757778,0,21.977871566456,2.39344304926383,2.08014873822732,20.0621751924471,17.0218958427934,19.4488190681753,1.85871391755592,0.542621605391443,13.1718453884923,10.7492940816933,2.48774364119782,20.5907486962692,0.301439377059586,0,0.799783929456456,1.2162378064119,0.502257091432126,0,3.11512312139057,1.14861935834114,2.85273810081437,3.04040744001916,3.08214483825575,5.37182889719687,0,0,0,0,6.86055485400651,7.8083912314573,5.41302168944387,5.52803675603351,5.10351001322531,0,0,0,0.12269149171914,1.50051156317903,1.62759014219841,0.415941723061614,3.39015078714607,2.83864347061082,2.45996971484698,0.300946099727719,0,2.0694614258501,11.2918351751024,14.0120568091694,4.60483156680839,1.56640925970192,0.686286847621712,0.206768026122887,0.215714200818617,0.106727557803444,6.06255142892519,8.32177197552485,19.3529787730995,0,0.460385919864187,0,0.128139149255701,1.02341449813341,0.160853921143607,0,12.3367755042124,9.05564799096948,5.74890092096664,8.30807086693794,7.08883308605751,3.50492403815704,0.200506470303285,0,10.3333003348146,10.925470080403,0.786746489756545,18.4991841292039,9.01079444121653,35.2957396129585,18.9980992049239,8.2330270536443,10.2360045663807,4.93271745301895,16.4096096237626,4.62681758070868,10.0250181891226,8.52872615553251,12.998689925297,10.8039881160734,22.8352249816622,0.219259876645935,0.784306353074702,8.20640400372445,7.54433685109323,0.650756789328606,0,15.0173922302083,14.7692004857852,2.29706215198469,2.60024098414608,4.82051789532479,1.25671933779759,8.78077117553473,7.21467271212809,8.27019434907183,4.40423003959922,6.96080130788297,12.2726343479185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| |||
|short_description=p2@FAM64A | |||
}} |
Revision as of 15:06, 11 September 2013
Short description: | p2@FAM64A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_FAM64A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001195228, NM_019013_5end |
EntrezGene: | FAM64A |
HGNC: | 25483 |
UniProt: | Q9BSJ6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.73e-21 | 253 |
embryonic cell | 5.87e-20 | 250 |
neurectodermal cell | 2.87e-13 | 59 |
migratory neural crest cell | 7.16e-12 | 41 |
ectodermal cell | 1.33e-10 | 72 |
neural cell | 7.10e-10 | 25 |
mesodermal cell | 1.14e-09 | 121 |
kidney cell | 7.43e-09 | 17 |
kidney epithelial cell | 7.43e-09 | 17 |
epithelial cell of nephron | 1.30e-08 | 15 |
meso-epithelial cell | 1.08e-07 | 45 |
neuron associated cell | 6.04e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 6.04e-07 | 17 |
kidney cortical cell | 6.25e-07 | 12 |
renal cortical epithelial cell | 6.25e-07 | 12 |
kidney tubule cell | 7.58e-07 | 10 |
nephron tubule epithelial cell | 7.58e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.30e-08 | 15 |
renal tubule | 1.30e-08 | 15 |
nephron tubule | 1.30e-08 | 15 |
nephron | 1.30e-08 | 15 |
uriniferous tubule | 1.30e-08 | 15 |
nephrogenic mesenchyme | 1.30e-08 | 15 |
excretory tube | 1.44e-07 | 16 |
kidney epithelium | 1.44e-07 | 16 |
cortex | 3.70e-07 | 15 |
simple squamous epithelium | 4.59e-07 | 22 |
parenchyma | 4.93e-07 | 15 |
unilaminar epithelium | 6.24e-07 | 148 |
cortex of kidney | 6.25e-07 | 12 |
renal parenchyma | 6.25e-07 | 12 |
nephron tubule epithelium | 7.58e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.36e-13 | 235 |
disease of cellular proliferation | 4.45e-13 | 239 |
cell type cancer | 6.01e-13 | 143 |
carcinoma | 1.42e-10 | 106 |
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