FFCP PHASE1:Hg19::chr19:6393485..6393494,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2962|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4652|TSSclassifier=S|UniProt=P35269|association_with_transcript=-14bp_to_ENST00000394456_5end|coexpression_cluster_id=C1|description=CAGE_peak_11_at_GTF2F1_5end|id=chr19:6393485..6393494,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002363;6.48e-18;2|ontology_enrichment_celltype_v019_2=CL:0002363,6.48e-18,2;CL:0000008,6.48e-18,2|ontology_enrichment_development_v019=CL:0000008;6.48e-18;2!UBERON:0009117;2.94e-14;10!UBERON:0005564;2.94e-14;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!1.93e-08!86;UBERON:0001049!2.36e-08!57;UBERON:0005068!2.36e-08!57;UBERON:0006241!2.36e-08!57;UBERON:0007135!2.36e-08!57;UBERON:0003075!5.09e-08!86;UBERON:0007284!5.09e-08!86;UBERON:0002616!7.76e-08!59;UBERON:0003056!1.10e-07!61;UBERON:0002346!2.82e-07!90;UBERON:0001017!5.24e-07!82;UBERON:0002780!6.43e-07!41;UBERON:0001890!6.43e-07!41;UBERON:0006240!6.43e-07!41;UBERON:0000073!8.11e-07!94;UBERON:0001016!8.11e-07!94|ontology_enrichment_uberon_v019=UBERON:0003566;6.48e-18;2!UBERON:0001777;6.48e-18;2!UBERON:0000473;1.50e-17;8!UBERON:0003135;4.66e-13;11!UBERON:0003891;1.22e-09;4!UBERON:0000964;1.22e-09;4!UBERON:0010409;1.22e-09;4!UBERON:0000991;2.64e-07;21!UBERON:0003101;5.17e-07;22!UBERON:0000079;5.17e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0003566,6.48e-18,2;UBERON:0001777,6.48e-18,2;UBERON:0000473,1.33e-17,8;UBERON:0003135,4.25e-13,11;UBERON:0003891,1.22e-09,4;UBERON:0000964,1.22e-09,4;UBERON:0010409,1.22e-09,4;UBERON:0004348,1.22e-09,4;UBERON:0005427,1.22e-09,4;UBERON:0000991,2.52e-07,21;UBERON:0009196,2.52e-07,21;UBERON:0009117,2.52e-07,21;UBERON:0005564,2.52e-07,21;UBERON:0004176,4.94e-07,22;UBERON:0003101,4.94e-07,22;UBERON:0000079,4.94e-07,22|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0.527533956456907,0,0,0,0,0,0,0.369363174230364,0,0.313454721478088,0,0,0,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.802320587350522,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,1.37528029272598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0.300091096084402,0.103052529238439,0,0,0,0.0974370051611986,0,0,0.161646056818812,0,0,0,0.193260853163297,0,0,0.121973706129595,0,0,0,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0,0,0,0,0,0.325808305310325,2.07986957055916,0,0,0.117408694235822,0,0,0,0.790204397959275,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0.871533458600294,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0.391602314925481,0,0,0,0,0.303127571446259,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0.154209693802656,0,0.164254312027618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.103041011647722,0.0915694648183434,0.165018999841176,0,0,0,0.193341436584244,0.154048617114644,0.15350367472613,0.137836572484531,0.107420244868274,0,0,0.0890320356467374,0,0,0,0,0,0,0,0.308033580176089,0.532306030317022,0,0.18532421910392,0.143124886741991,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0.141405431953713,0,0,0,0,0,0,0,0,0.281695602532241,0,0.0982490410131212,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.185803175125719,0,0,0,0,0,0.211673582723883,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0,0,0.251932747854276,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0.174919999992391,0,0,0,0,0,0,0,0.885741385813839,0,0,0.442317039724898,0,0.219385397153973,0,0.139423744278603,0.0769502585037971,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.30607276163049,0,1.80388103297391,0.72581733978073,0,0,0,0,0,0.138674673013139,0,0.0979923974143777,0.261177619741208,0.17472666824203,0.171986032471617,0,0,0,0,0,0.225980740780532,0,0,0.126621591911757,0,0,0,0,0,0.114536596165916,0.171594997861965,0,0,0,0.135904206073614,0,0.101998217636322,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0.0787831823072236,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0.136203406111576,0.32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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2962 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4652 | |||
|TSSclassifier=S | |||
|UniProt=P35269 | |||
|association_with_transcript=-14bp_to_ENST00000394456_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_11_at_GTF2F1_5end | |||
|id=chr19:6393485..6393494,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002363;6.48e-18;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002363,6.48e-18,2;CL:0000008,6.48e-18,2 | |||
|ontology_enrichment_development_v019=CL:0000008;6.48e-18;2!UBERON:0009117;2.94e-14;10!UBERON:0005564;2.94e-14;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.93e-08!86;UBERON:0001049!2.36e-08!57;UBERON:0005068!2.36e-08!57;UBERON:0006241!2.36e-08!57;UBERON:0007135!2.36e-08!57;UBERON:0003075!5.09e-08!86;UBERON:0007284!5.09e-08!86;UBERON:0002616!7.76e-08!59;UBERON:0003056!1.10e-07!61;UBERON:0002346!2.82e-07!90;UBERON:0001017!5.24e-07!82;UBERON:0002780!6.43e-07!41;UBERON:0001890!6.43e-07!41;UBERON:0006240!6.43e-07!41;UBERON:0000073!8.11e-07!94;UBERON:0001016!8.11e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0003566;6.48e-18;2!UBERON:0001777;6.48e-18;2!UBERON:0000473;1.50e-17;8!UBERON:0003135;4.66e-13;11!UBERON:0003891;1.22e-09;4!UBERON:0000964;1.22e-09;4!UBERON:0010409;1.22e-09;4!UBERON:0000991;2.64e-07;21!UBERON:0003101;5.17e-07;22!UBERON:0000079;5.17e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003566,6.48e-18,2;UBERON:0001777,6.48e-18,2;UBERON:0000473,1.33e-17,8;UBERON:0003135,4.25e-13,11;UBERON:0003891,1.22e-09,4;UBERON:0000964,1.22e-09,4;UBERON:0010409,1.22e-09,4;UBERON:0004348,1.22e-09,4;UBERON:0005427,1.22e-09,4;UBERON:0000991,2.52e-07,21;UBERON:0009196,2.52e-07,21;UBERON:0009117,2.52e-07,21;UBERON:0005564,2.52e-07,21;UBERON:0004176,4.94e-07,22;UBERON:0003101,4.94e-07,22;UBERON:0000079,4.94e-07,22 | |||
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|short_description=p11@GTF2F1 | |||
}} |
Revision as of 22:44, 11 September 2013
Short description: | p11@GTF2F1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_GTF2F1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -14bp_to_ENST00000394456_5end |
EntrezGene: | GTF2F1 |
HGNC: | 4652 |
UniProt: | P35269 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
keratocyte | 6.48e-18 | 2 |
migratory cranial neural crest cell | 6.48e-18 | 2 |
Ontology term | p-value | n |
---|---|---|
head connective tissue | 6.48e-18 | 2 |
substantia propria of cornea | 6.48e-18 | 2 |
testis | 1.33e-17 | 8 |
male reproductive organ | 4.25e-13 | 11 |
stroma | 1.22e-09 | 4 |
cornea | 1.22e-09 | 4 |
eye surface | 1.22e-09 | 4 |
optic eminence | 1.22e-09 | 4 |
corneal primordium | 1.22e-09 | 4 |
gonad | 2.52e-07 | 21 |
indifferent external genitalia | 2.52e-07 | 21 |
indifferent gonad | 2.52e-07 | 21 |
gonad primordium | 2.52e-07 | 21 |
external genitalia | 4.94e-07 | 22 |
male organism | 4.94e-07 | 22 |
male reproductive system | 4.94e-07 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.