FFCP PHASE1:Hg19::chr3:186336312..186336319,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C129|description=CAGE_peak_at_chr3:186336312..186336319,+|id=chr3:186336312..186336319,+|ontology_enrichment_celltype=CL:0000181!2.31e-24!12;CL:0000417!2.31e-24!12;CL:0000668!2.31e-24!12;CL:0000414!2.31e-24!12;CL:0000412!2.31e-24!12;CL:0000182!2.31e-24!12;CL:0000223!7.69e-11!59;CL:0002231!2.79e-07!3|ontology_enrichment_celltype_v019=CL:0000182;1.28e-29;12!CL:0002231;1.26e-08;3|ontology_enrichment_celltype_v019_2=CL:0000182,1.54e-29,12;CL:0000223,1.26e-09,58;CL:0002231,1.40e-08,3|ontology_enrichment_development_v019=UBERON:0004161;8.43e-50;11!UBERON:0009497;3.26e-42;13!UBERON:0001041;1.69e-18;30!UBERON:0003104;7.27e-18;31!CL:0000223;1.11e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!4.27e-34!19;UBERON:0006925!4.27e-34!19;UBERON:0008836!4.27e-34!19;UBERON:0008835!1.86e-29!22;UBERON:0003894!1.86e-29!22;UBERON:0009854!3.54e-28!23;UBERON:0002365!3.65e-28!31;UBERON:0002330!3.65e-28!31;UBERON:0007499!6.31e-26!25;UBERON:0009497!6.31e-26!25;UBERON:0000015!6.31e-26!25;UBERON:0002423!6.31e-26!25;UBERON:0006235!6.31e-26!25;UBERON:0004161!6.31e-26!25;UBERON:0005057!6.26e-25!26;UBERON:0009856!6.26e-25!26;UBERON:0003929!6.47e-21!54;UBERON:0002530!4.21e-19!59;UBERON:0002368!1.62e-18!35;UBERON:0000949!2.19e-14!45;UBERON:0005911!1.23e-13!82;UBERON:0005172!9.50e-12!55;UBERON:0005173!9.50e-12!55;UBERON:0002417!1.41e-10!61;UBERON:0000916!1.41e-10!61;UBERON:0004921!2.06e-08!129;UBERON:0004185!2.06e-08!129;UBERON:0000490!6.83e-08!138;UBERON:0001007!6.51e-07!155;UBERON:0001555!6.51e-07!155;UBERON:0007026!6.51e-07!155|ontology_enrichment_uberon_v019=UBERON:0002107;1.56e-41;19!UBERON:0006925;1.56e-41;19!UBERON:0002423;1.26e-31;25!UBERON:0002365;4.91e-24;31!UBERON:0002330;4.91e-24;31!UBERON:0002368;4.61e-21;33!UBERON:0000949;1.35e-15;43!UBERON:0002530;3.22e-11;57!UBERON:0005172;2.50e-09;52!UBERON:0005173;2.50e-09;52!UBERON:0002417;3.78e-07;58!UBERON:0000916;3.78e-07;58|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.56e-41,19;UBERON:0006925,1.56e-41,19;UBERON:0008836,1.56e-41,19;UBERON:0008835,6.61e-36,22;UBERON:0003894,6.61e-36,22;UBERON:0009854,2.35e-34,23;UBERON:0007499,1.26e-31,25;UBERON:0009497,1.26e-31,25;UBERON:0000015,1.26e-31,25;UBERON:0002423,1.26e-31,25;UBERON:0006235,1.26e-31,25;UBERON:0004161,1.26e-31,25;UBERON:0009856,2.03e-30,26;UBERON:0002365,1.52e-25,31;UBERON:0002330,1.52e-25,31;UBERON:0002368,1.21e-22,35;UBERON:0003929,7.93e-20,54;UBERON:0002530,3.81e-18,59;UBERON:0000949,1.22e-17,45;UBERON:0005172,1.03e-14,54;UBERON:0005173,1.03e-14,54;UBERON:0002417,3.03e-13,60;UBERON:0000916,3.03e-13,60;UBERON:0005911,4.91e-13,82;UBERON:0001041,3.96e-09,87;UBERON:0004921,6.23e-09,118;UBERON:0005256,1.04e-08,122;UBERON:0005177,7.47e-08,101;UBERON:0001007,3.09e-07,145;UBERON:0001555,3.09e-07,145;UBERON:0007026,3.09e-07,145;UBERON:0000490,3.90e-07,148;UBERON:0009569,4.52e-07,112;UBERON:0003914,9.18e-07,117|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.91413608338813,0,0,0.737930631258681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7887322147588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02418136999391,1.2362378757175,1.14586024552114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90517903781507,11.9256200020999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C129 | |||
|description=CAGE_peak_at_chr3:186336312..186336319,+ | |||
|id=chr3:186336312..186336319,+ | |||
|ontology_enrichment_celltype=CL:0000181!2.31e-24!12;CL:0000417!2.31e-24!12;CL:0000668!2.31e-24!12;CL:0000414!2.31e-24!12;CL:0000412!2.31e-24!12;CL:0000182!2.31e-24!12;CL:0000223!7.69e-11!59;CL:0002231!2.79e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.28e-29;12!CL:0002231;1.26e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.54e-29,12;CL:0000223,1.26e-09,58;CL:0002231,1.40e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;8.43e-50;11!UBERON:0009497;3.26e-42;13!UBERON:0001041;1.69e-18;30!UBERON:0003104;7.27e-18;31!CL:0000223;1.11e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!4.27e-34!19;UBERON:0006925!4.27e-34!19;UBERON:0008836!4.27e-34!19;UBERON:0008835!1.86e-29!22;UBERON:0003894!1.86e-29!22;UBERON:0009854!3.54e-28!23;UBERON:0002365!3.65e-28!31;UBERON:0002330!3.65e-28!31;UBERON:0007499!6.31e-26!25;UBERON:0009497!6.31e-26!25;UBERON:0000015!6.31e-26!25;UBERON:0002423!6.31e-26!25;UBERON:0006235!6.31e-26!25;UBERON:0004161!6.31e-26!25;UBERON:0005057!6.26e-25!26;UBERON:0009856!6.26e-25!26;UBERON:0003929!6.47e-21!54;UBERON:0002530!4.21e-19!59;UBERON:0002368!1.62e-18!35;UBERON:0000949!2.19e-14!45;UBERON:0005911!1.23e-13!82;UBERON:0005172!9.50e-12!55;UBERON:0005173!9.50e-12!55;UBERON:0002417!1.41e-10!61;UBERON:0000916!1.41e-10!61;UBERON:0004921!2.06e-08!129;UBERON:0004185!2.06e-08!129;UBERON:0000490!6.83e-08!138;UBERON:0001007!6.51e-07!155;UBERON:0001555!6.51e-07!155;UBERON:0007026!6.51e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.56e-41;19!UBERON:0006925;1.56e-41;19!UBERON:0002423;1.26e-31;25!UBERON:0002365;4.91e-24;31!UBERON:0002330;4.91e-24;31!UBERON:0002368;4.61e-21;33!UBERON:0000949;1.35e-15;43!UBERON:0002530;3.22e-11;57!UBERON:0005172;2.50e-09;52!UBERON:0005173;2.50e-09;52!UBERON:0002417;3.78e-07;58!UBERON:0000916;3.78e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.56e-41,19;UBERON:0006925,1.56e-41,19;UBERON:0008836,1.56e-41,19;UBERON:0008835,6.61e-36,22;UBERON:0003894,6.61e-36,22;UBERON:0009854,2.35e-34,23;UBERON:0007499,1.26e-31,25;UBERON:0009497,1.26e-31,25;UBERON:0000015,1.26e-31,25;UBERON:0002423,1.26e-31,25;UBERON:0006235,1.26e-31,25;UBERON:0004161,1.26e-31,25;UBERON:0009856,2.03e-30,26;UBERON:0002365,1.52e-25,31;UBERON:0002330,1.52e-25,31;UBERON:0002368,1.21e-22,35;UBERON:0003929,7.93e-20,54;UBERON:0002530,3.81e-18,59;UBERON:0000949,1.22e-17,45;UBERON:0005172,1.03e-14,54;UBERON:0005173,1.03e-14,54;UBERON:0002417,3.03e-13,60;UBERON:0000916,3.03e-13,60;UBERON:0005911,4.91e-13,82;UBERON:0001041,3.96e-09,87;UBERON:0004921,6.23e-09,118;UBERON:0005256,1.04e-08,122;UBERON:0005177,7.47e-08,101;UBERON:0001007,3.09e-07,145;UBERON:0001555,3.09e-07,145;UBERON:0007026,3.09e-07,145;UBERON:0000490,3.90e-07,148;UBERON:0009569,4.52e-07,112;UBERON:0003914,9.18e-07,117 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.91413608338813,0,0,0.737930631258681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7887322147588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02418136999391,1.2362378757175,1.14586024552114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90517903781507,11.9256200020999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:186336312..186336319,+ | |||
}} |
Revision as of 23:09, 12 September 2013
Short description: | p@chr3:186336312..186336319, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:186336312..186336319, + |
Coexpression cluster: | C129_liver_Hepatocyte_colon_duodenum_temporal_testicular_small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.54e-29 | 12 |
endodermal cell | 1.26e-09 | 58 |
epithelial cell of prostate | 1.40e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
liver | 1.56e-41 | 19 |
digestive gland | 1.56e-41 | 19 |
liver bud | 1.56e-41 | 19 |
hepatic diverticulum | 6.61e-36 | 22 |
liver primordium | 6.61e-36 | 22 |
digestive tract diverticulum | 2.35e-34 | 23 |
epithelial sac | 1.26e-31 | 25 |
epithelium of foregut-midgut junction | 1.26e-31 | 25 |
anatomical boundary | 1.26e-31 | 25 |
hepatobiliary system | 1.26e-31 | 25 |
foregut-midgut junction | 1.26e-31 | 25 |
septum transversum | 1.26e-31 | 25 |
sac | 2.03e-30 | 26 |
exocrine gland | 1.52e-25 | 31 |
exocrine system | 1.52e-25 | 31 |
endocrine gland | 1.21e-22 | 35 |
gut epithelium | 7.93e-20 | 54 |
gland | 3.81e-18 | 59 |
endocrine system | 1.22e-17 | 45 |
abdomen element | 1.03e-14 | 54 |
abdominal segment element | 1.03e-14 | 54 |
abdominal segment of trunk | 3.03e-13 | 60 |
abdomen | 3.03e-13 | 60 |
endo-epithelium | 4.91e-13 | 82 |
foregut | 3.96e-09 | 87 |
subdivision of digestive tract | 6.23e-09 | 118 |
trunk mesenchyme | 1.04e-08 | 122 |
trunk region element | 7.47e-08 | 101 |
digestive system | 3.09e-07 | 145 |
digestive tract | 3.09e-07 | 145 |
primitive gut | 3.09e-07 | 145 |
unilaminar epithelium | 3.90e-07 | 148 |
subdivision of trunk | 4.52e-07 | 112 |
epithelial tube | 9.18e-07 | 117 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.