FFCP PHASE1:Hg19::chr9:139554833..139554866,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=W|UniProt=|association_with_transcript=6bp_to_ENST00000411904,uc004cic.2_5end|description=CAGE_peak_1_at_ENST00000411904_5end,CAGE_peak_1_at_uc004cic.2_5end|id=chr9:139554833..139554866,-|ontology_enrichment_celltype=CL:0002139!3.74e-27!24;CL:0000071!3.03e-20!18;CL:0002546!3.03e-20!18;CL:0000115!8.78e-19!35;CL:0002078!1.04e-13!44;CL:0002543!7.21e-13!6;CL:0000213!2.67e-09!57;CL:0000215!2.67e-09!57;CL:0005020!1.83e-08!6;CL:0002138!1.83e-08!6;CL:0005022!1.83e-08!6;CL:0002144!1.34e-07!3;CL:0002618!5.29e-07!3|ontology_enrichment_celltype_v019=CL:0002139;3.73e-43;24!CL:0000071;8.29e-33;18!CL:0002543;8.92e-26;6!CL:0000115;4.91e-24;36!CL:0002078;2.22e-16;45!CL:0002144;1.62e-14;3!CL:0002618;3.58e-13;3!CL:0002138;7.98e-12;6!CL:0000213;1.68e-11;58!CL:0000215;1.68e-11;58!CL:0002544;4.74e-07;6|ontology_enrichment_celltype_v019_2=CL:0002139,3.87e-43,24;CL:0000071,7.32e-33,18;CL:0002546,7.32e-33,18;CL:0000115,4.51e-31,36;CL:0002543,7.86e-26,6;CL:0002078,4.83e-24,45;CL:0000213,9.46e-18,58;CL:0000215,9.46e-18,58;CL:0002144,1.62e-14,3;CL:0002618,3.03e-13,3;CL:0005020,9.33e-12,6;CL:0002138,9.33e-12,6;CL:0005022,9.33e-12,6;CL:0000076,1.42e-07,63;CL:0002544,4.60e-07,6|ontology_enrichment_development_v019=CL:0002546;8.29e-33;18!CL:0005022;7.98e-12;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:8692;1.03e-07;31|ontology_enrichment_disease_v019_2=DOID:8692,8.35e-08,31|ontology_enrichment_uberon=UBERON:0001986!3.03e-20!18;UBERON:0004638!3.03e-20!18;UBERON:0004852!3.03e-20!18;UBERON:0007023!3.99e-20!115;UBERON:0000487!8.18e-16!22;UBERON:0006914!1.96e-13!25;UBERON:0001638!4.89e-11!9;UBERON:0003920!4.89e-11!9;UBERON:0004582!4.89e-11!9;UBERON:0000055!1.18e-10!69;UBERON:0002049!2.75e-09!79;UBERON:0007798!2.75e-09!79;UBERON:0001009!2.71e-08!113;UBERON:0001915!1.34e-07!3;UBERON:0001982!1.34e-07!3;UBERON:0001981!1.61e-07!60;UBERON:0007500!1.61e-07!60;UBERON:0004537!1.61e-07!60;UBERON:0006965!1.61e-07!60;UBERON:0004872!2.45e-07!84;UBERON:0003978!8.84e-07!3;UBERON:0009751!8.84e-07!3;UBERON:0000946!8.84e-07!3;UBERON:0002523!8.84e-07!3;UBERON:0005983!8.84e-07!3;UBERON:0002165!8.84e-07!3;UBERON:0002062!8.84e-07!3;UBERON:0007280!8.84e-07!3|ontology_enrichment_uberon_v019=UBERON:0004638;8.29e-33;18!UBERON:0001986;8.29e-33;18!UBERON:0004852;8.29e-33;18!UBERON:0000487;2.30e-26;22!UBERON:0006914;6.92e-23;25!UBERON:0001638;1.00e-22;9!UBERON:0003920;1.00e-22;9!UBERON:0004582;1.00e-22;9!UBERON:0000490;3.91e-15;33!UBERON:0010523;1.62e-14;3!UBERON:0001915;1.62e-14;3!UBERON:0001982;1.62e-14;3!UBERON:0000055;1.29e-11;65!UBERON:0001473;6.93e-09;8!UBERON:0004536;6.93e-09;8!UBERON:0006558;6.93e-09;8!UBERON:0002066;4.32e-08;5!UBERON:0002465;4.08e-07;10!UBERON:0007500;6.01e-07;56!UBERON:0001981;6.01e-07;56!UBERON:0004537;6.01e-07;56!UBERON:0002049;7.44e-07;75!UBERON:0007798;7.44e-07;75|ontology_enrichment_uberon_v019_2=UBERON:0004638,7.32e-33,18;UBERON:0001986,7.32e-33,18;UBERON:0004852,7.32e-33,18;UBERON:0000487,2.08e-26,22;UBERON:0006914,6.34e-23,25;UBERON:0001638,8.68e-23,9;UBERON:0003920,8.68e-23,9;UBERON:0004582,8.68e-23,9;UBERON:0000055,1.58e-18,68;UBERON:0002049,1.41e-15,78;UBERON:0007798,1.41e-15,78;UBERON:0010523,1.62e-14,3;UBERON:0001915,1.62e-14,3;UBERON:0001982,1.62e-14,3;UBERON:0007500,3.47e-13,59;UBERON:0001981,3.47e-13,59;UBERON:0004537,3.47e-13,59;UBERON:0006965,3.47e-13,59;UBERON:0004535,6.61e-10,109;UBERON:0004872,9.69e-10,83;UBERON:0001009,1.58e-09,112;UBERON:0001473,7.78e-09,8;UBERON:0004536,7.78e-09,8;UBERON:0006558,7.78e-09,8;UBERON:0002066,3.91e-08,5;UBERON:0003914,9.00e-08,117;UBERON:0002465,4.47e-07,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.3312184520636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,9.25199300053181,6.1655941927969,3.68737718685108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,2.61958150995425,0,0,0,0,0,0,0,0,1.59009925893364,3.4409383804245,6.59566953054429,0,0,0,0.417989933073621,0.258416759169329,0,1.33888245105868,7.25092770796465,10.6438094800592,4.63717909341522,0.735326160691737,0,1.42879565254528,3.36794058939255,1.91439516821648,3.06633274931766,19.9345788509307,6.96166626935548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,3.60916119402685,6.01881166349594,3.42457474022277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=6bp_to_ENST00000411904,uc004cic.2_5end | |||
|description=CAGE_peak_1_at_ENST00000411904_5end,CAGE_peak_1_at_uc004cic.2_5end | |||
|id=chr9:139554833..139554866,- | |||
|ontology_enrichment_celltype=CL:0002139!3.74e-27!24;CL:0000071!3.03e-20!18;CL:0002546!3.03e-20!18;CL:0000115!8.78e-19!35;CL:0002078!1.04e-13!44;CL:0002543!7.21e-13!6;CL:0000213!2.67e-09!57;CL:0000215!2.67e-09!57;CL:0005020!1.83e-08!6;CL:0002138!1.83e-08!6;CL:0005022!1.83e-08!6;CL:0002144!1.34e-07!3;CL:0002618!5.29e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.73e-43;24!CL:0000071;8.29e-33;18!CL:0002543;8.92e-26;6!CL:0000115;4.91e-24;36!CL:0002078;2.22e-16;45!CL:0002144;1.62e-14;3!CL:0002618;3.58e-13;3!CL:0002138;7.98e-12;6!CL:0000213;1.68e-11;58!CL:0000215;1.68e-11;58!CL:0002544;4.74e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,3.87e-43,24;CL:0000071,7.32e-33,18;CL:0002546,7.32e-33,18;CL:0000115,4.51e-31,36;CL:0002543,7.86e-26,6;CL:0002078,4.83e-24,45;CL:0000213,9.46e-18,58;CL:0000215,9.46e-18,58;CL:0002144,1.62e-14,3;CL:0002618,3.03e-13,3;CL:0005020,9.33e-12,6;CL:0002138,9.33e-12,6;CL:0005022,9.33e-12,6;CL:0000076,1.42e-07,63;CL:0002544,4.60e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;8.29e-33;18!CL:0005022;7.98e-12;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;1.03e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,8.35e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0001986!3.03e-20!18;UBERON:0004638!3.03e-20!18;UBERON:0004852!3.03e-20!18;UBERON:0007023!3.99e-20!115;UBERON:0000487!8.18e-16!22;UBERON:0006914!1.96e-13!25;UBERON:0001638!4.89e-11!9;UBERON:0003920!4.89e-11!9;UBERON:0004582!4.89e-11!9;UBERON:0000055!1.18e-10!69;UBERON:0002049!2.75e-09!79;UBERON:0007798!2.75e-09!79;UBERON:0001009!2.71e-08!113;UBERON:0001915!1.34e-07!3;UBERON:0001982!1.34e-07!3;UBERON:0001981!1.61e-07!60;UBERON:0007500!1.61e-07!60;UBERON:0004537!1.61e-07!60;UBERON:0006965!1.61e-07!60;UBERON:0004872!2.45e-07!84;UBERON:0003978!8.84e-07!3;UBERON:0009751!8.84e-07!3;UBERON:0000946!8.84e-07!3;UBERON:0002523!8.84e-07!3;UBERON:0005983!8.84e-07!3;UBERON:0002165!8.84e-07!3;UBERON:0002062!8.84e-07!3;UBERON:0007280!8.84e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;8.29e-33;18!UBERON:0001986;8.29e-33;18!UBERON:0004852;8.29e-33;18!UBERON:0000487;2.30e-26;22!UBERON:0006914;6.92e-23;25!UBERON:0001638;1.00e-22;9!UBERON:0003920;1.00e-22;9!UBERON:0004582;1.00e-22;9!UBERON:0000490;3.91e-15;33!UBERON:0010523;1.62e-14;3!UBERON:0001915;1.62e-14;3!UBERON:0001982;1.62e-14;3!UBERON:0000055;1.29e-11;65!UBERON:0001473;6.93e-09;8!UBERON:0004536;6.93e-09;8!UBERON:0006558;6.93e-09;8!UBERON:0002066;4.32e-08;5!UBERON:0002465;4.08e-07;10!UBERON:0007500;6.01e-07;56!UBERON:0001981;6.01e-07;56!UBERON:0004537;6.01e-07;56!UBERON:0002049;7.44e-07;75!UBERON:0007798;7.44e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,7.32e-33,18;UBERON:0001986,7.32e-33,18;UBERON:0004852,7.32e-33,18;UBERON:0000487,2.08e-26,22;UBERON:0006914,6.34e-23,25;UBERON:0001638,8.68e-23,9;UBERON:0003920,8.68e-23,9;UBERON:0004582,8.68e-23,9;UBERON:0000055,1.58e-18,68;UBERON:0002049,1.41e-15,78;UBERON:0007798,1.41e-15,78;UBERON:0010523,1.62e-14,3;UBERON:0001915,1.62e-14,3;UBERON:0001982,1.62e-14,3;UBERON:0007500,3.47e-13,59;UBERON:0001981,3.47e-13,59;UBERON:0004537,3.47e-13,59;UBERON:0006965,3.47e-13,59;UBERON:0004535,6.61e-10,109;UBERON:0004872,9.69e-10,83;UBERON:0001009,1.58e-09,112;UBERON:0001473,7.78e-09,8;UBERON:0004536,7.78e-09,8;UBERON:0006558,7.78e-09,8;UBERON:0002066,3.91e-08,5;UBERON:0003914,9.00e-08,117;UBERON:0002465,4.47e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.3312184520636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,9.25199300053181,6.1655941927969,3.68737718685108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,2.61958150995425,0,0,0,0,0,0,0,0,1.59009925893364,3.4409383804245,6.59566953054429,0,0,0,0.417989933073621,0.258416759169329,0,1.33888245105868,7.25092770796465,10.6438094800592,4.63717909341522,0.735326160691737,0,1.42879565254528,3.36794058939255,1.91439516821648,3.06633274931766,19.9345788509307,6.96166626935548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,3.60916119402685,6.01881166349594,3.42457474022277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03558180854457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577076851905779,0,0,1.79621434289535,4.40462351304443,1.69338866179106,6.16781686521655,0.280797178113459,0,0,0,7.44883822327054,0,0,0,0,0,0,0,0,0,0,0,0,8.45922030527097,0,2.3441308683503,0,0,0,0,0,0,0,0,0,0,0,0.796991953004279,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.538651809526579,0,0,0,0,0,0,0,0,1.41282230755522,0.332423363800313,0,0,0,0,0.476809736941136,0,0,0,0,0,0.353830258013357,1.83309043480088,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,1.20990716048664,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0.0969890164884194,0,1.35588444468319,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,1.14580212005842,3.58936512288407,0.399358000997982,0.429226048136571,0.89268582976749,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551639951094387,0.944182586429966,0,0,0,0.714695326373367,0,0,0,0,0,0,4.59718116196298,0,0,0.732761168390412,2.65013777824443,0,0,0,0,7.47511887973863,5.97376359378731,9.1132592176383,0,0,0,0,0,0.5013797880454,0.306345576763462,0.327872630709804,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0.781514011233092,0,0,0,0,0,0,0.0634158101939068,0,0.548257766857182,1.98484471355718,0,0,0,0,0,0,0.443511850813194,0,0,0,0,0,0,0.235479278551542,0,0,0.913158720509496,0,0,0.78624198594322,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0.647428837187895,0.513314034281235,0,0,0,0,0,0,0,0,0,0,0,0.490296643507811,0,0,0,0.4226557275834,0,0.187967835959707,2.90060495881097,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0,1.66645102024618,0,0.124149428591716,0,0.381882949668989,0.808468755832877,0.870866991587845,0.342233301085281,0.134704106029175,0.286888821570705,0.332660356546013,0,0,0,0,0,0.488965776731466,1.62758471326295,0,1.61019034872821,0 | |||
|short_description=p1@ENST00000411904,p1@uc004cic.2 | |||
}} |
Revision as of 08:13, 14 September 2013
Short description: | p1@ENST00000411904, p1@uc004cic.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000411904_5end, CAGE_peak_1_at_uc004cic.2_5end |
Coexpression cluster: | NA |
Association with transcript: | 6bp_to_ENST00000411904, uc004cic.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.87e-43 | 24 |
blood vessel endothelial cell | 7.32e-33 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.32e-33 | 18 |
endothelial cell | 4.51e-31 | 36 |
vein endothelial cell | 7.86e-26 | 6 |
meso-epithelial cell | 4.83e-24 | 45 |
lining cell | 9.46e-18 | 58 |
barrier cell | 9.46e-18 | 58 |
capillary endothelial cell | 1.62e-14 | 3 |
endothelial cell of umbilical vein | 3.03e-13 | 3 |
lymphangioblast | 9.33e-12 | 6 |
endothelial cell of lymphatic vessel | 9.33e-12 | 6 |
vascular lymphangioblast | 9.33e-12 | 6 |
squamous epithelial cell | 1.42e-07 | 63 |
aortic endothelial cell | 4.60e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 7.32e-33 | 18 |
endothelium | 7.32e-33 | 18 |
cardiovascular system endothelium | 7.32e-33 | 18 |
simple squamous epithelium | 2.08e-26 | 22 |
squamous epithelium | 6.34e-23 | 25 |
vein | 8.68e-23 | 9 |
venous blood vessel | 8.68e-23 | 9 |
venous system | 8.68e-23 | 9 |
vessel | 1.58e-18 | 68 |
vasculature | 1.41e-15 | 78 |
vascular system | 1.41e-15 | 78 |
microcirculatory vessel | 1.62e-14 | 3 |
endothelium of capillary | 1.62e-14 | 3 |
capillary | 1.62e-14 | 3 |
epithelial tube open at both ends | 3.47e-13 | 59 |
blood vessel | 3.47e-13 | 59 |
blood vasculature | 3.47e-13 | 59 |
vascular cord | 3.47e-13 | 59 |
cardiovascular system | 6.61e-10 | 109 |
splanchnic layer of lateral plate mesoderm | 9.69e-10 | 83 |
circulatory system | 1.58e-09 | 112 |
lymphatic vessel | 7.78e-09 | 8 |
lymph vasculature | 7.78e-09 | 8 |
lymphatic part of lymphoid system | 7.78e-09 | 8 |
umbilical vein | 3.91e-08 | 5 |
epithelial tube | 9.00e-08 | 117 |
lymphoid system | 4.47e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 8.35e-08 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.