FFCP PHASE1:Hg19::chr12:8798930..8798945,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C628 | |||
|description=CAGE_peak_at_chr12:8798930..8798945,- | |||
|id=chr12:8798930..8798945,- | |||
|ontology_enrichment_celltype=CL:0002334!5.39e-16!12;CL:0000057!3.32e-13!75;CL:0000055!3.16e-10!180;CL:0002620!2.44e-09!23;CL:1000306!1.94e-07!4;CL:0002547!1.94e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.62e-23;12!CL:0002579;8.90e-19;3!CL:0002580;1.81e-18;3!CL:0000135;4.48e-18;3!CL:0000388;4.48e-18;3!CL:0002617;1.76e-12;2!CL:0000136;2.92e-11;13!CL:0002615;4.23e-09;3!CL:0000214;6.79e-09;3!CL:0002541;7.78e-09;3!CL:0002616;2.10e-07;1!CL:0002581;8.18e-07;1!CL:1000306;9.89e-07;4!CL:0002547;9.89e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,2.90e-23,12;CL:0002579,9.18e-19,3;CL:0002580,2.10e-18,3;CL:0000135,3.77e-18,3;CL:0000388,3.77e-18,3;CL:0000057,4.31e-14,76;CL:0002617,1.52e-12,2;CL:0000136,1.00e-09,15;CL:0002615,4.67e-09,3;CL:0000214,7.48e-09,3;CL:0002541,8.74e-09,3;CL:0002616,2.10e-07,1;CL:0000134,3.37e-07,354;CL:0002320,5.99e-07,361;CL:0002581,8.18e-07,1;CL:1000306,8.95e-07,4;CL:0002547,8.95e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2513;4.30e-07;1!DOID:3369;4.30e-07;1!DOID:6193;8.18e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3369,3.20e-07,1;DOID:2513,3.40e-07,1;DOID:6193,8.67e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003688!1.69e-11!6;UBERON:0002358!1.69e-11!6;UBERON:0003684!1.69e-11!6;UBERON:0001178!1.69e-11!6;UBERON:0004457!3.70e-09!12;UBERON:0000042!3.70e-09!12;UBERON:0004573!1.36e-08!33;UBERON:0004571!1.36e-08!33;UBERON:0005631!6.03e-08!14;UBERON:0000158!6.03e-08!14;UBERON:0004923!7.84e-08!57;UBERON:0000415!1.94e-07!4;UBERON:0007240!1.94e-07!4;UBERON:0005742!1.94e-07!4;UBERON:0005734!1.94e-07!4;UBERON:0004664!1.94e-07!4;UBERON:0004663!1.94e-07!4;UBERON:0002199!6.85e-07!45;UBERON:0002416!6.85e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;5.62e-32;9!UBERON:0000042;5.62e-32;9!UBERON:0003688;3.76e-25;6!UBERON:0002358;3.76e-25;6!UBERON:0003684;3.76e-25;6!UBERON:0001178;3.76e-25;6!UBERON:0007846;4.48e-18;3!UBERON:0000043;4.48e-18;3!UBERON:0007845;4.48e-18;3!UBERON:0000310;1.68e-14;10!UBERON:0001443;3.66e-13;11!UBERON:0005406;1.52e-12;2!UBERON:0005631;2.62e-09;10!UBERON:0000158;2.62e-09;10!UBERON:0006915;6.79e-09;3!UBERON:0007616;6.79e-09;3!UBERON:0002217;6.79e-09;3!UBERON:0002018;6.79e-09;3!UBERON:0003124;7.78e-09;3!UBERON:0000920;7.78e-09;3!UBERON:0004923;8.14e-09;55!UBERON:0004797;9.89e-07;4!UBERON:0000415;9.89e-07;4!UBERON:0007240;9.89e-07;4!UBERON:0005742;9.89e-07;4!UBERON:0005734;9.89e-07;4!UBERON:0004664;9.89e-07;4!UBERON:0004663;9.89e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,4.37e-25,6;UBERON:0002358,4.37e-25,6;UBERON:0003684,4.37e-25,6;UBERON:0001178,4.37e-25,6;UBERON:0004457,1.09e-23,12;UBERON:0000042,1.09e-23,12;UBERON:0007846,3.77e-18,3;UBERON:0000043,3.77e-18,3;UBERON:0007845,3.77e-18,3;UBERON:0000310,1.68e-14,10;UBERON:0001443,3.66e-13,11;UBERON:0005406,1.52e-12,2;UBERON:0004923,2.18e-12,66;UBERON:0006915,7.48e-09,3;UBERON:0007616,7.48e-09,3;UBERON:0002217,7.48e-09,3;UBERON:0002018,7.48e-09,3;UBERON:0000920,8.74e-09,3;UBERON:0002384,3.53e-08,371;UBERON:0000415,8.95e-07,4;UBERON:0007240,8.95e-07,4;UBERON:0005742,8.95e-07,4;UBERON:0005734,8.95e-07,4;UBERON:0004664,8.95e-07,4;UBERON:0004663,8.95e-07,4 | |||
|phase1_expression=4.90531624030503,1.71280419112787,6.20199378022273,5.00366491765652,0.893922188854576,5.23403114460221,0,0,0,0,0,0,0.263766978228454,0,0,0,0.602694528023977,0,0,0,0,0,0.572471974262113,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,1.77282716330412,0.529636723252875,6.3104056564739,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69084453533293,0.640672166455702,0.635795703478686,0.900273288253207,0,2.31876486041066,0.744467425326359,0.675105328965065,0.487185025805993,0.504867548488229,0.0920498986422993,0,2.4850671476163,0.302256294682921,0.508681776931463,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0,0.220587945464788,0.217879444092406,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0.99972991182057,0,0,0,0,0,0,0.434343920002738,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,6.94701861892575,2.14846762603287,3.92924132206303,3.58789617915963,4.09365799253363,8.04269605718038,1.48418066444991,0.154209693802656,0.355123450626254,0.328508624055237,0,0.581051892299796,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464845549297286,1.88887408098384,0.6970372701606,0.308033580176089,0,0,0.18532421910392,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0.421258456238981,0,0.243713489631284,0,0,0,0,0,1.32687795048244,0.876901770507525,0,0,0,0,0,0,0,0,0,2.32218398827431,6.25660296623814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.121360521749513,0,0,1.90995587790152,0.593929361665277,1.53580351049616,0,0,0,0,0,0,0,0,0.102268682502155,0,2.79935628895627,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269272933229316,0.108647371922008,2.23300811812344,0.0915975934018623,5.86338253620498,0,0,0,0,0,0,0,0,0,0.979396848954886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.17472666824203,1.37588825977293,0.290268993867255,0.292357268344742,0.246346371159628,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.5926644736038,0.326587360109409,0,0,1.36310417428337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0.233713309847224,1.10961172300523,0,0.251567901752575,0,0,0.302461847526478,0.15543720058278,0.591420599958536,0,0,0,0,0.53168342911599,0,0,0.380805212168795,0,0,0.107410557042488,0.464033759878494,0,1.20008329398946,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,0,2.60396512716726,2.77305377178851,3.02838593486652,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.23806443146374,0,0,0,0,0.202117188958219,0.217716747896961,0,0,0,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | |||
|short_description=p@chr12:8798930..8798945,- | |||
}} |
Revision as of 11:57, 11 January 2014
Short description: | p@chr12:8798930..8798945, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_at_chr12:8798930..8798945, - |
Coexpression cluster: | C628_Adipocyte_Preadipocyte_Fibroblast_tenocyte_Smooth_Placental_chorionic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 2.90e-23 | 12 |
omentum preadipocyte | 9.18e-19 | 3 |
preadipocyte of the breast | 2.10e-18 | 3 |
fibrocyte | 3.77e-18 | 3 |
tendon cell | 3.77e-18 | 3 |
fibroblast | 4.31e-14 | 76 |
adipocyte of breast | 1.52e-12 | 2 |
fat cell | 1.00e-09 | 15 |
adipocyte of omentum tissue | 4.67e-09 | 3 |
synovial cell | 7.48e-09 | 3 |
chorionic membrane mesenchymal stem cell | 8.74e-09 | 3 |
perirenal adipocyte cell | 2.10e-07 | 1 |
mesenchymal cell | 3.37e-07 | 354 |
connective tissue cell | 5.99e-07 | 361 |
perirenal preadipocyte | 8.18e-07 | 1 |
fibroblast of tunica adventitia of artery | 8.95e-07 | 4 |
fibroblast of the aortic adventitia | 8.95e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
omentum | 4.37e-25 | 6 |
peritoneum | 4.37e-25 | 6 |
abdominal cavity | 4.37e-25 | 6 |
visceral peritoneum | 4.37e-25 | 6 |
cavity lining | 1.09e-23 | 12 |
serous membrane | 1.09e-23 | 12 |
dense regular connective tissue | 3.77e-18 | 3 |
tendon | 3.77e-18 | 3 |
regular connective tissue | 3.77e-18 | 3 |
breast | 1.68e-14 | 10 |
chest | 3.66e-13 | 11 |
perirenal fat | 1.52e-12 | 2 |
organ component layer | 2.18e-12 | 66 |
stratified squamous epithelium | 7.48e-09 | 3 |
layer of synovial tissue | 7.48e-09 | 3 |
synovial joint | 7.48e-09 | 3 |
synovial membrane of synovial joint | 7.48e-09 | 3 |
egg chorion | 8.74e-09 | 3 |
connective tissue | 3.53e-08 | 371 |
artery wall | 8.95e-07 | 4 |
tunica adventitia of artery | 8.95e-07 | 4 |
adventitia | 8.95e-07 | 4 |
tunica adventitia of blood vessel | 8.95e-07 | 4 |
aorta tunica adventitia | 8.95e-07 | 4 |
aorta wall | 8.95e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
peripheral primitive neuroectodermal tumor | 3.20e-07 | 1 |
basal cell carcinoma | 3.40e-07 | 1 |
epithelioid sarcoma | 8.67e-07 | 1 |