FFCP PHASE1:Hg19::chr1:44889667..44889688,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55182 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25552 | |||
|TSSclassifier=strong | |||
|UniProt=B4DLZ9 | |||
|association_with_transcript=-23bp_to_ENST00000443020_5end | |||
|description=CAGE_peak_12_at_RNF220_5end | |||
|id=chr1:44889667..44889688,+ | |||
|ontology_enrichment_celltype=CL:0002623!8.19e-09!3;CL:0002605!1.58e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002623;3.88e-14;3!CL:0002605;1.20e-13;3!CL:0000037;1.05e-10;1!CL:0001024;1.05e-10;1!CL:0000243;4.23e-09;15!CL:0000125;4.23e-09;15!CL:0000622;7.72e-09;5!CL:0000095;3.69e-08;17!CL:0000154;1.67e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,3.64e-14,3;CL:0002605,1.60e-13,3;CL:0001024,1.33e-10,1;CL:0000243,4.19e-09,15;CL:0000125,4.19e-09,15;CL:0000030,4.19e-09,15;CL:0000339,4.19e-09,15;CL:0000622,7.43e-09,5;CL:0000095,3.66e-08,17;CL:0000123,3.66e-08,17;CL:0000154,1.62e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000339;4.23e-09;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;2.83e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.67e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0001017!5.29e-33!82;UBERON:0005743!5.40e-33!86;UBERON:0000955!4.92e-32!69;UBERON:0006238!4.92e-32!69;UBERON:0001893!4.88e-31!34;UBERON:0002020!8.03e-31!34;UBERON:0003528!8.03e-31!34;UBERON:0002780!1.01e-29!41;UBERON:0001890!1.01e-29!41;UBERON:0006240!1.01e-29!41;UBERON:0002791!4.41e-29!33;UBERON:0000073!7.18e-29!94;UBERON:0001016!7.18e-29!94;UBERON:0003080!7.38e-29!42;UBERON:0002616!5.88e-28!59;UBERON:0001869!1.21e-27!32;UBERON:0001049!4.49e-27!57;UBERON:0005068!4.49e-27!57;UBERON:0006241!4.49e-27!57;UBERON:0007135!4.49e-27!57;UBERON:0000956!1.05e-26!25;UBERON:0000203!1.05e-26!25;UBERON:0000153!4.17e-21!129;UBERON:0007811!4.17e-21!129;UBERON:0002619!9.91e-21!22;UBERON:0001950!3.27e-20!20;UBERON:0000033!3.50e-20!123;UBERON:0003075!1.18e-19!86;UBERON:0007284!1.18e-19!86;UBERON:0003056!1.44e-19!61;UBERON:0002346!2.13e-18!90;UBERON:0004121!2.03e-17!169;UBERON:0000924!9.55e-17!173;UBERON:0006601!9.55e-17!173;UBERON:0007023!1.16e-16!115;UBERON:0000200!3.11e-15!6;UBERON:0002771!3.30e-08!3;UBERON:0001871!1.39e-07!7;UBERON:0006331!2.45e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002702;1.16e-19;2!UBERON:0000200;1.27e-14;6!UBERON:0001870;1.93e-13;3!UBERON:0000956;1.32e-12;25!UBERON:0000203;1.32e-12;25!UBERON:0007195;3.40e-11;1!UBERON:0002581;1.05e-10;1!UBERON:0001869;1.48e-10;32!UBERON:0002791;6.26e-10;32!UBERON:0003528;5.53e-09;34!UBERON:0002020;5.53e-09;34!UBERON:0001893;5.53e-09;34!UBERON:0001872;2.00e-08;5!UBERON:0001044;1.67e-07;6!UBERON:0003293;1.67e-07;6!UBERON:0003294;1.67e-07;6!UBERON:0010047;1.67e-07;6!UBERON:0003408;1.67e-07;6!UBERON:0000167;1.67e-07;6!UBERON:0001950;2.43e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002702,5.94e-20,2;UBERON:0000200,9.37e-15,6;UBERON:0001870,1.24e-13,3;UBERON:0000956,1.31e-12,25;UBERON:0000203,1.31e-12,25;UBERON:0007195,3.76e-11,1;UBERON:0002581,1.10e-10,1;UBERON:0002791,7.57e-10,32;UBERON:0001869,7.57e-10,32;UBERON:0003528,2.92e-09,34;UBERON:0002020,2.92e-09,34;UBERON:0001893,2.92e-09,34;UBERON:0001872,2.16e-08,5;UBERON:0002780,1.21e-07,41;UBERON:0001890,1.21e-07,41;UBERON:0003080,1.21e-07,41;UBERON:0006240,1.21e-07,41;UBERON:0000955,1.25e-07,68;UBERON:0006238,1.25e-07,68;UBERON:0001044,1.62e-07,6;UBERON:0003293,1.62e-07,6;UBERON:0003294,1.62e-07,6;UBERON:0010047,1.62e-07,6;UBERON:0000167,1.62e-07,6;UBERON:0001950,2.23e-07,20;UBERON:0002619,9.53e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,4.24310717725941,1.12988375635323,0,0,0,0,0,0,0,0,0,0,0,1.17440175733939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1490322207942,1.90506224451495,3.57084134302011,1.12318871245384,0,0,5.01268954180134,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.409074730008619,0,0,0,0,0,0,0,6.66821940867821,0,0.278304294485554,0,0,0,0,0.568967241427498,0,0,5.17115059862197,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0.10893846351899,0.41827123283581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.202203398942031,0,0.702793337176017,0,0,0,0,0,0.30607276163049,0.821425535170343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.759729551470544,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0.104602846312333,1.32597682927218,0,0,0,0,0,0,0,0,0,0,0,0,0.335917362433631,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.668245123238271,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.13223260174269,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,1.77213635993397,0.366078794705889,1.3771002377715,0,0,0.18628920882415,1.52183498429854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0,0,0,0,0.983091635014877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385375350578757,0,0.319267718114302,0.82046545696302,0,0.414943514785307,0.484426936895553,0,0,0,0,0,0,0,0,0,0.80682027481408,0,0,0,0,0.945526184657525,0,1.2401207790071,0.697573912132975,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0.685952037749674,0,1.24968269769413,0,0,0.078493092850514,0,0,0,6.69375532777726,14.8103023244986,0.78624198594322,0,0,0,0,0.62164849248911,8.1944869005096,6.91259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0.178553938605658,0,0,0,0,0.286679166302903,0,0.951880862672806,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0.23806443146374,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p12@RNF220 | |||
}} |
Revision as of 18:16, 10 January 2014
Short description: | p12@RNF220 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_RNF220_5end |
Coexpression cluster: | NA |
Association with transcript: | -23bp_to_ENST00000443020_5end |
EntrezGene: | RNF220 |
HGNC: | 25552 |
UniProt: | B4DLZ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 3.64e-14 | 3 |
astrocyte of the cerebral cortex | 1.60e-13 | 3 |
CD34-positive, CD38-negative hematopoietic stem cell | 1.33e-10 | 1 |
glial cell (sensu Vertebrata) | 4.19e-09 | 15 |
glial cell | 4.19e-09 | 15 |
glioblast | 4.19e-09 | 15 |
glioblast (sensu Vertebrata) | 4.19e-09 | 15 |
acinar cell | 7.43e-09 | 5 |
neuron associated cell | 3.66e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 3.66e-08 | 17 |
protein secreting cell | 1.62e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
middle frontal gyrus | 5.94e-20 | 2 |
gyrus | 9.37e-15 | 6 |
frontal cortex | 1.24e-13 | 3 |
cerebral cortex | 1.31e-12 | 25 |
pallium | 1.31e-12 | 25 |
stroma of bone marrow | 3.76e-11 | 1 |
postcentral gyrus | 1.10e-10 | 1 |
regional part of telencephalon | 7.57e-10 | 32 |
cerebral hemisphere | 7.57e-10 | 32 |
brain grey matter | 2.92e-09 | 34 |
gray matter | 2.92e-09 | 34 |
telencephalon | 2.92e-09 | 34 |
parietal lobe | 2.16e-08 | 5 |
regional part of forebrain | 1.21e-07 | 41 |
forebrain | 1.21e-07 | 41 |
anterior neural tube | 1.21e-07 | 41 |
future forebrain | 1.21e-07 | 41 |
brain | 1.25e-07 | 68 |
future brain | 1.25e-07 | 68 |
saliva-secreting gland | 1.62e-07 | 6 |
gland of oral region | 1.62e-07 | 6 |
gland of foregut | 1.62e-07 | 6 |
oral gland | 1.62e-07 | 6 |
oral cavity | 1.62e-07 | 6 |
neocortex | 2.23e-07 | 20 |
regional part of cerebral cortex | 9.53e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.67e-07 | 31 |