FFCP PHASE1:Hg19::chr1:75602005..75602017,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_at_chr1:75602005..75602017,+ | |||
|id=chr1:75602005..75602017,+ | |||
|ontology_enrichment_celltype=CL:0002556!1.04e-49!6;CL:0002552!4.02e-27!5;CL:0000057!4.99e-14!75;CL:0002580!3.99e-12!3;CL:0000055!6.04e-09!180 | |||
|ontology_enrichment_celltype_v019=CL:0002556;9.07e-18;6!CL:0000243;3.38e-07;15!CL:0000125;3.38e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002556,9.07e-18,6;CL:0000243,3.38e-07,15;CL:0000125,3.38e-07,15;CL:0000030,3.38e-07,15;CL:0000339,3.38e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0006238;2.16e-10;10!CL:0000339;3.38e-07;15 | |||
|ontology_enrichment_disease=DOID:5662!1.62e-09!1;DOID:3093!6.24e-07!11 | |||
|ontology_enrichment_disease_v019=DOID:3093;1.22e-09;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,1.22e-09,11 | |||
|ontology_enrichment_uberon=UBERON:0001758!1.04e-49!6;UBERON:0003672!1.04e-49!6;UBERON:0000165!9.87e-41!28;UBERON:0000930!9.87e-41!28;UBERON:0003129!1.27e-36!11;UBERON:0001444!1.17e-31!48;UBERON:0000075!6.82e-31!13;UBERON:0005944!6.82e-31!13;UBERON:0004288!6.82e-31!13;UBERON:0003089!6.82e-31!13;UBERON:0000078!1.69e-28!18;UBERON:0001828!4.65e-17!8;UBERON:0000153!1.68e-15!129;UBERON:0007811!1.68e-15!129;UBERON:0000033!2.43e-14!123;UBERON:0000166!8.03e-14!21;UBERON:0003102!1.35e-12!95;UBERON:0001282!4.87e-10!1;UBERON:0009842!4.87e-10!1;UBERON:0003704!4.87e-10!1;UBERON:0001171!4.87e-10!1;UBERON:0001172!4.87e-10!1;UBERON:0005705!6.31e-10!1;UBERON:0008193!6.31e-10!1;UBERON:0002514!6.31e-10!1;UBERON:0003462!6.31e-10!1;UBERON:0008001!6.31e-10!1;UBERON:0007914!6.31e-10!1;UBERON:0003457!6.31e-10!1;UBERON:0009292!6.31e-10!1;UBERON:0007375!6.31e-10!1;UBERON:0003323!6.31e-10!1;UBERON:0002397!6.31e-10!1;UBERON:0001709!6.31e-10!1;UBERON:0004066!6.31e-10!1;UBERON:0002244!6.31e-10!1;UBERON:0005620!6.31e-10!1;UBERON:0004068!6.31e-10!1;UBERON:0004362!6.31e-10!1;UBERON:0002372!2.26e-09!1;UBERON:0001961!2.26e-09!1;UBERON:0001744!2.26e-09!1;UBERON:0001735!2.26e-09!1;UBERON:0004121!2.71e-08!169;UBERON:0000161!4.17e-08!35;UBERON:0000924!4.81e-08!173;UBERON:0006601!4.81e-08!173;UBERON:0001007!5.06e-08!155;UBERON:0001555!5.06e-08!155;UBERON:0007026!5.06e-08!155;UBERON:0004119!3.68e-07!169;UBERON:0000925!3.68e-07!169;UBERON:0006595!3.68e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001758;9.07e-18;6!UBERON:0003672;9.07e-18;6!UBERON:0003129;1.91e-15;7!UBERON:0011137;2.37e-10;11!UBERON:0010323;2.37e-10;11!UBERON:0000075;1.54e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001758,9.07e-18,6;UBERON:0003672,9.07e-18,6;UBERON:0003129,1.91e-15,7;UBERON:0010323,2.37e-10,11;UBERON:0011137,2.00e-08,14;UBERON:0000075,1.54e-07,16 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0.245668634623536,0.929932030581889,0,0.247266929278557,0,0,0.168336113954066,0.500474079487857,0.277064115484183,0.438977620880838,1.22595118319608,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0.841980283299221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.91153644677601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.7401848272839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0.790068058663633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26721740526556,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0.217716747896961,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:75602005..75602017,+ | |||
}} |
Revision as of 19:07, 10 January 2014
Short description: | p@chr1:75602005..75602017, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:75602005..75602017, + |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of periodontium | 9.07e-18 | 6 |
glial cell (sensu Vertebrata) | 3.38e-07 | 15 |
glial cell | 3.38e-07 | 15 |
glioblast | 3.38e-07 | 15 |
glioblast (sensu Vertebrata) | 3.38e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
periodontium | 9.07e-18 | 6 |
dentition | 9.07e-18 | 6 |
skull | 1.91e-15 | 7 |
cranial skeletal system | 2.37e-10 | 11 |
axial skeletal system | 2.00e-08 | 14 |
subdivision of skeletal system | 1.54e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 1.22e-09 | 11 |