FFCP PHASE1:Hg19::chr3:184032313..184032416,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1981 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3296 | |||
|TSSclassifier=strong | |||
|UniProt=E9PFM1,F8WB97,C9K073,C9JF13,C9JWH9,F8WCF2,C9JWH7,C9J2Z7,C9JIH5 | |||
|association_with_transcript=0bp_to_ENST00000350481,ENST00000382330,ENST00000392537,ENST00000413967,ENST00000421110,ENST00000426123,ENST00000440448,ENST00000442406,ENST00000444134,ENST00000450424,ENST00000455679,ENST00000485712,uc003fno.1,uc003fnp.2,uc003fnq.2,uc003fnr.2,uc003fns.2,uc003fnt.2,uc010hxw.1,uc010hxx.2,uc010hxy.2_5end | |||
|description=CAGE_peak_1_at_EIF4G1_5end | |||
|id=chr3:184032313..184032416,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.03e-29!254;CL:0002321!6.88e-20!248;CL:0000220!1.37e-19!246;CL:0000548!1.07e-18!679;CL:0000004!1.07e-18!679;CL:0000255!1.07e-18!679;CL:0000012!1.39e-17!682;CL:0000076!2.42e-12!62;CL:0000144!1.50e-09!625;CL:0000063!3.92e-09!578;CL:0000222!4.60e-08!119;CL:0000055!5.73e-08!180;CL:0000223!2.10e-07!59;CL:1000449!2.52e-07!16;CL:0002371!9.15e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:1000449;2.78e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.69e-29,253;CL:0002321,2.52e-20,250;CL:0000076,7.88e-12,63;CL:0000222,2.17e-08,121;CL:0000223,8.79e-08,58;CL:1000449,2.80e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.41e-12!235;DOID:14566!1.40e-11!239;DOID:305!4.79e-08!106;DOID:0050687!1.54e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.41e-12,235;DOID:14566,1.40e-11,239;DOID:305,4.79e-08,106;DOID:0050687,1.54e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0003104!3.71e-14!238;UBERON:0009142!3.71e-14!238;UBERON:0002100!6.71e-12!216;UBERON:0003914!7.86e-12!118;UBERON:0001048!1.33e-10!168;UBERON:0000466!3.51e-10!126;UBERON:0009569!6.21e-10!113;UBERON:0005177!8.10e-10!107;UBERON:0005256!1.13e-09!143;UBERON:0005172!4.25e-09!55;UBERON:0005173!4.25e-09!55;UBERON:0004119!5.98e-08!169;UBERON:0000925!5.98e-08!169;UBERON:0006595!5.98e-08!169;UBERON:0000490!7.47e-08!138;UBERON:0000077!9.86e-08!130;UBERON:0000464!1.71e-07!104;UBERON:0004211!2.52e-07!16;UBERON:0001285!2.52e-07!16;UBERON:0007684!2.52e-07!16;UBERON:0003220!2.52e-07!16;UBERON:0004208!2.52e-07!16;UBERON:0001851!2.58e-07!16;UBERON:0001041!3.11e-07!98;UBERON:0002417!4.02e-07!61;UBERON:0000916!4.02e-07!61;UBERON:0000080!5.71e-07!18;UBERON:0002120!5.71e-07!18;UBERON:0004875!5.71e-07!18;UBERON:0005721!5.71e-07!18;UBERON:0005754!5.71e-07!18;UBERON:0007297!5.71e-07!18;UBERON:0006555!5.85e-07!17;UBERON:0005103!5.85e-07!17;UBERON:0000083!5.85e-07!17;UBERON:0009201!5.85e-07!17;UBERON:0004819!5.85e-07!17;UBERON:0006553!5.85e-07!17;UBERON:0003074!5.85e-07!17;UBERON:0003060!5.85e-07!17;UBERON:0000119!6.33e-07!312;UBERON:0003887!7.95e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.78e-07;15!UBERON:0004819;2.78e-07;15!UBERON:0001285;2.78e-07;15!UBERON:0007684;2.78e-07;15!UBERON:0001851;2.80e-07;15!UBERON:0006554;4.28e-07;30!UBERON:0001008;4.28e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,5.26e-14,199;UBERON:0005177,2.02e-12,101;UBERON:0003914,1.07e-11,117;UBERON:0009569,3.02e-10,112;UBERON:0000490,4.30e-09,148;UBERON:0005172,5.67e-09,54;UBERON:0005173,5.67e-09,54;UBERON:0003104,5.74e-09,160;UBERON:0009142,5.74e-09,160;UBERON:0005256,1.07e-08,122;UBERON:0001048,1.66e-08,160;UBERON:0004211,2.80e-07,15;UBERON:0009773,2.80e-07,15;UBERON:0001231,2.80e-07,15;UBERON:0001285,2.80e-07,15;UBERON:0007684,2.80e-07,15;UBERON:0004208,2.80e-07,15;UBERON:0001851,2.88e-07,15;UBERON:0002417,5.34e-07,60;UBERON:0000916,5.34e-07,60;UBERON:0006554,5.37e-07,47;UBERON:0006555,6.81e-07,16;UBERON:0004819,6.81e-07,16 | |||
|phase1_expression=63.0423976068831,104.266955134909,72.4505637053292,57.0417800612843,63.0215143142476,55.8296655424236,103.852950049007,114.341297090256,115.182862036129,247.699807993521,367.043414353497,178.248159658221,175.932574478379,55.5710924790609,58.6573355038411,96.1424959426039,92.2122627876685,96.4009319311333,104.905551739959,179.01801844365,188.904640092178,173.653915698861,66.1205130272741,133.041941170843,113.490546193702,198.904095161917,229.060644565349,211.653290952484,47.5970774987174,33.7769870325547,85.3036839471579,171.01234775308,235.84423440337,117.212021222872,123.017914521519,92.2678318843366,37.8744566741953,45.427623499614,61.7676898208036,60.5460329297227,58.8897697251001,55.3858168892455,68.5151009906936,60.3402690935194,66.5061660892305,66.9532008878373,68.1017078133656,89.634599588758,68.1354015969228,64.4430958801617,54.8183911972275,36.8912278626193,57.9172743637519,75.5217079793076,71.7760378950011,64.9436071421986,85.9654372682214,42.2480150756759,64.5837012902604,70.2834569296645,62.015701202507,71.2478808403307,63.0305158084357,63.9337125799041,65.0068694528028,105.533651792552,103.388493333265,56.782198348024,58.9275697814828,39.9627474257415,73.858739321271,64.4485862978238,53.7986058649504,32.9558246646629,36.3553352940224,28.5135757891391,50.7725412782158,43.5512989240368,60.5935461847992,35.3415802239148,30.4342516114608,31.0529061399878,26.3994366691984,25.6685147293202,16.9006758234075,31.5780364699215,25.6253431703048,24.1396024780883,29.0859744025339,27.6675588815256,50.0907412816315,69.8812255351417,63.457355868788,44.9382517168688,32.5094966529291,59.2614190743923,54.0951867813041,60.9166682261205,55.306803230868,38.2857074444653,37.8069829294965,39.2961678759829,37.0170783975031,37.9909657978442,25.336108042836,19.0519149341914,32.4964636518019,53.6702629650579,49.9427894629932,50.6468746179322,42.5579027390206,44.6296752031981,43.5962495696458,34.2452259954833,38.6781438078414,48.4963986745583,37.5556083729883,30.9264700934367,39.2180522630229,35.6793264042988,29.2987554235388,36.1171776890382,39.4506811983765,34.9403448451562,31.2326816380865,31.7281517738983,27.0972238983945,55.8450678732509,61.7786852259902,62.2744936696036,102.398883851864,85.1790091823618,85.4121913114783,66.8662431911448,104.779623322901,79.2310458715706,106.568316904847,76.4016746375138,72.413669947676,92.6828881393517,104.786899331899,76.9502068549062,244.806433732588,219.133605685598,74.6459005405772,71.2190625554003,96.9263532182527,48.4135967339844,44.61560304085,37.1457501329565,150.065617561862,108.389558983372,182.943044347202,123.237131339434,191.291742911717,185.429560267605,183.706575585857,70.8061920123961,78.2685777910763,97.0689777017544,105.541281082597,95.7942853205326,112.756670587254,145.96224289731,145.825550618717,115.107349758179,140.10632851873,199.097097494514,154.849803840542,160.425896467014,120.180344018347,31.6273001846552,38.7780264148325,217.610932019125,70.5700171407352,100.164734726683,134.792546067857,250.695206534463,129.4539595024,125.031104831734,153.718553850775,142.080507888284,131.642267974101,90.1214396146213,121.288732110186,109.88549247022,95.6452034636798,258.925182176345,130.795072191904,156.309279103179,103.866832983502,137.163494415917,139.048859212225,144.94523251672,94.7275354622705,116.569767128868,112.72842726276,91.4762200107181,107.313847306894,313.095508506681,201.931697850363,102.011685056164,175.916638939982,177.598098025361,133.888174368656,98.0760946556863,114.631638945733,81.104010959415,364.340350084079,68.3383644219416,72.9045739988893,261.379344689514,81.720655686082,207.915915816823,76.3079110959518,266.329052276718,81.4573363147621,265.05546295632,67.9328251980169,63.5269003297931,204.840534882086,84.9340188059007,106.144930786365,110.738468862569,130.64539176301,171.795952638013,126.364759550261,124.843041758839,119.098791441256,123.874960743368,169.559611788422,114.967868108886,128.288616510449,169.815607682922,93.9317465196868,106.804623447355,69.3004302402802,133.923297645103,159.143947433728,149.908860587526,135.771880433577,154.912284749701,159.683126661768,121.348177344148,120.676201052088,118.502124339488,132.867981832437,286.093218559029,156.398124305932,201.401934598192,183.794800491655,213.273506019045,223.909374632252,55.1828874268313,85.3539763489208,114.950432900012,212.805803407325,171.974682484158,170.798724127361,107.865538609687,258.040177805777,218.386304908711,157.321162807548,73.0361551342984,142.299337413816,94.4156568357423,93.0600880278988,75.7211525893701,117.740455295932,132.20686896261,64.0164215827233,112.790055797113,113.108314501722,60.926992091405,122.458971456969,121.359483239483,95.7380607693448,127.297665069115,220.828423199162,80.3041077770388,78.8033484418373,102.00543284606,106.792885481968,112.482008182905,133.663067485016,210.093634057053,168.793123982468,183.047517244295,156.503443894458,130.048544046416,162.063587301538,240.633307005144,182.667268841144,149.610103074738,72.00434567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| |||
|short_description=p1@EIF4G1 | |||
}} |
Revision as of 22:59, 21 January 2014
Short description: | p1@EIF4G1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EIF4G1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000350481, ENST00000382330, ENST00000392537, ENST00000413967, ENST00000421110, ENST00000426123, ENST00000440448, ENST00000442406, ENST00000444134, ENST00000450424, ENST00000455679, ENST00000485712, uc003fno.1, uc003fnp.2, uc003fnq.2, uc003fnr.2, uc003fns.2, uc003fnt.2, uc010hxw.1, uc010hxx.2, uc010hxy.2_5end |
EntrezGene: | EIF4G1 |
HGNC: | 3296 |
UniProt: | E9PFM1F8WB97C9K073C9JF13C9JWH9F8WCF2C9JWH7C9J2Z7C9JIH5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.69e-29 | 253 |
embryonic cell | 2.52e-20 | 250 |
squamous epithelial cell | 7.88e-12 | 63 |
mesodermal cell | 2.17e-08 | 121 |
endodermal cell | 8.79e-08 | 58 |
epithelial cell of nephron | 2.80e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
trunk | 5.26e-14 | 199 |
trunk region element | 2.02e-12 | 101 |
epithelial tube | 1.07e-11 | 117 |
subdivision of trunk | 3.02e-10 | 112 |
unilaminar epithelium | 4.30e-09 | 148 |
abdomen element | 5.67e-09 | 54 |
abdominal segment element | 5.67e-09 | 54 |
mesenchyme | 5.74e-09 | 160 |
entire embryonic mesenchyme | 5.74e-09 | 160 |
trunk mesenchyme | 1.07e-08 | 122 |
primordium | 1.66e-08 | 160 |
nephron epithelium | 2.80e-07 | 15 |
renal tubule | 2.80e-07 | 15 |
nephron tubule | 2.80e-07 | 15 |
nephron | 2.80e-07 | 15 |
uriniferous tubule | 2.80e-07 | 15 |
nephrogenic mesenchyme | 2.80e-07 | 15 |
cortex | 2.88e-07 | 15 |
abdominal segment of trunk | 5.34e-07 | 60 |
abdomen | 5.34e-07 | 60 |
urinary system structure | 5.37e-07 | 47 |
excretory tube | 6.81e-07 | 16 |
kidney epithelium | 6.81e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.41e-12 | 235 |
disease of cellular proliferation | 1.40e-11 | 239 |
carcinoma | 4.79e-08 | 106 |
cell type cancer | 1.54e-07 | 143 |