FFCP PHASE1:Hg19::chr2:51255231..51255244,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=9378 | |EntrezGene=entrezgene:9378 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=8008 | |HGNC=HGNC:8008 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=-312bp_to_ENST00000496792_5end | |association_with_transcript=-312bp_to_ENST00000496792_5end | ||
|cluster_id=chr2:51255231..51255244,- | |||
|coexpression_cluster_id=C171 | |coexpression_cluster_id=C171 | ||
|description=CAGE_peak_38_at_NRXN1_5end | |description=CAGE_peak_38_at_NRXN1_5end | ||
Revision as of 10:43, 29 July 2015
| Short description: | p38@NRXN1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_38_at_NRXN1_5end |
| Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
| Association with transcript: | -312bp_to_ENST00000496792_5end |
| EntrezGene: | 9378 |
| HGNC: | 8008 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
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CAGE Expression
| Sample | p38@NRXN1 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| Merkel cell | 4.32e-26 | 2 |
| keratinocyte | 2.66e-11 | 5 |
| stratified squamous epithelial cell | 1.22e-09 | 6 |
| keratin accumulating cell | 1.22e-09 | 6 |
| stratified epithelial cell | 1.22e-09 | 6 |
| keratinizing barrier epithelial cell | 1.22e-09 | 6 |
| epithelial fate stem cell | 1.22e-09 | 6 |
| stratified epithelial stem cell | 1.22e-09 | 6 |
| surface ectodermal cell | 1.22e-09 | 6 |
| epidermal cell | 7.48e-07 | 9 |
Showing 1 to 10 of 10 entries
| Ontology term | p-value | n |
|---|---|---|
| thyroid gland | 3.26e-11 | 5 |
| pharyngeal pouch | 3.26e-11 | 5 |
| thyroid diverticulum | 3.26e-11 | 5 |
| pharyngeal pouch 2 | 3.26e-11 | 5 |
| thyroid primordium | 3.26e-11 | 5 |
| testis | 1.80e-07 | 8 |
Showing 1 to 6 of 6 entries
| Ontology term | p-value | n |
|---|---|---|
| lung small cell carcinoma | 1.00e-13 | 4 |
| bronchus cancer | 2.03e-08 | 7 |
| bronchogenic carcinoma | 2.03e-08 | 7 |
| lung carcinoma | 7.91e-07 | 9 |
Showing 1 to 4 of 4 entries
