FFCP PHASE1:Hg19::chr6:138893661..138893687,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=57224 | |EntrezGene=entrezgene:57224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=21021 | |HGNC=HGNC:21021 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=Q5SYE7 | |UniProt=uniprot:Q5SYE7 | ||
|association_with_transcript=0bp_to_ENST00000427025,NM_020464,uc003qhx.2_5end | |association_with_transcript=0bp_to_ENST00000427025,NM_020464,uc003qhx.2_5end | ||
|cluster_id=chr6:138893661..138893687,- | |||
|coexpression_cluster_id=C3731 | |coexpression_cluster_id=C3731 | ||
|description=CAGE_peak_7_at_NHSL1_5end | |description=CAGE_peak_7_at_NHSL1_5end |
Revision as of 20:09, 30 July 2015
Short description: | p7@NHSL1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_NHSL1_5end |
Coexpression cluster: | C3731_temporal_Neural_parietal_Melanocyte_duodenum_occipital_Neurons |
Association with transcript: | 0bp_to_ENST00000427025, NM_020464, uc003qhx.2_5end |
EntrezGene: | 57224 |
HGNC: | 21021 |
UniProt: | Q5SYE7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p7@NHSL1 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 1.70e-26 | 59 |
pigment cell | 6.93e-22 | 14 |
ectodermal cell | 2.74e-20 | 72 |
neural cell | 4.83e-18 | 25 |
migratory neural crest cell | 1.22e-16 | 41 |
melanocyte | 5.26e-15 | 10 |
melanoblast | 5.26e-15 | 10 |
columnar/cuboidal epithelial cell | 5.07e-14 | 27 |
neuronal stem cell | 7.04e-14 | 8 |
neurecto-epithelial cell | 1.51e-12 | 20 |
Showing 1 to 10 of 29 entries
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 5.24e-18 | 11 |
eye | 1.18e-14 | 21 |
visual system | 1.18e-14 | 21 |
neural plate | 1.95e-14 | 82 |
presumptive neural plate | 1.95e-14 | 82 |
face | 7.24e-14 | 22 |
ecto-epithelium | 8.78e-14 | 104 |
neurectoderm | 2.03e-13 | 86 |
camera-type eye | 2.86e-13 | 20 |
simple eye | 2.86e-13 | 20 |
Showing 1 to 10 of 45 entries