UBERON:0000966: Difference between revisions
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|located_in= | |located_in= | ||
|name=retina | |name=retina | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001802 | |part_of=UBERON:0001802 | ||
Latest revision as of 17:12, 12 September 2014
| Name: | retina | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"inner layer of eyeball" EXACT [] "Netzhaut" RELATED [BTO:0001175] "tunica interna of eyeball" EXACT [] | ||
| Comments: | Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Us the parent class photoreceptor array / light-sensitive tissue for arthropods | ||
| Alt_id: | UBERON:FBbt_00004200-FMA_58301-MA_0000276-MIAA_0000142-XAO_0000009-ZFA_0000152 | ||
| Subset: |
uberon_slim vertebrate_core |
Human_eye_cross-sectional_view_grayscale.png]
200px-Human_eye_cross-sectional_view_grayscale.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0005388(photoreceptor array) |
|---|---|
| develops_from: | UBERON:0003072(optic cup) |
| part_of: | UBERON:0001802(posterior segment of eyeball) |
Children
| is a: | FF:10440-106E8 () |
|---|---|
| derives from: | FF:0010030 (human retina - adult sample),FF:0102919 (retinoblastoma cell line sample) |
| part of: | UBERON:0001781 (layer of retina),CL:0002585 (retinal blood vessel endothelial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10030-101E3 (retina, adult, pool1)
- 10440-106E8
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10671-109D5
- 10672-109D6
- 10673-109D7
- 10674-109D8
- 10675-109D9
- 10676-109E1
- 10677-109E2
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000966 (retina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.07e-130 | FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_361d665c148ed44e98e04e377fe01f23 | p@chr13:99135322..99135327, - |
| 1.07e-130 | FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_361d665c148ed44e98e04e377fe01f23 | p2@SERPINE3 |
| 1.07e-130 | FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_361d665c148ed44e98e04e377fe01f23 | p@chr13:99135322..99135327, - |
| 1.07e-130 | FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_361d665c148ed44e98e04e377fe01f23 | p2@SERPINE3 |
| 5.17e-105 | FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_78f438f6297774ae5d1bbfb0a3520f13 | p@chr11:109990513..109990520, - |
| 5.17e-105 | FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_78f438f6297774ae5d1bbfb0a3520f13 | p@chr11:109990513..109990520, - |
| 1.51e-104 | FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_70a472b96485d69682dcd028a90ec6b0 | p@chr5:70308745..70308754, - |
| 1.51e-104 | FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_70a472b96485d69682dcd028a90ec6b0 | p@chr5:70308745..70308754, - |
| 4.11e-102 | FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_68699146f66a0b1dce02e682dd857bf4 | p@chr3:69928404..69928418, + |
| 4.11e-102 | FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_68699146f66a0b1dce02e682dd857bf4 | p@chr3:69928404..69928418, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_27fd91da61d856b34b4eb6ed367d4c29 | p9@C11orf9 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_27fd91da61d856b34b4eb6ed367d4c29 | p5@ENST00000437916 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_27fd91da61d856b34b4eb6ed367d4c29 | p5@ENST00000437916 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_27fd91da61d856b34b4eb6ed367d4c29 | p@chr1:147150847..147150854, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_27fd91da61d856b34b4eb6ed367d4c29 | p9@C11orf9 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_27fd91da61d856b34b4eb6ed367d4c29 | p@chr1:147150847..147150854, - |
| 7.0e-88 | FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_caa391d8529244369bb10a2a8e5138ec | p2@C11orf9 |
| 7.0e-88 | FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_caa391d8529244369bb10a2a8e5138ec | p2@C11orf9 |
| 1.37e-87 | FFCP PHASE1:Hg19::chr17:932340..932343,-#_04ac9f38903e8dc2e7f3c1e1cb9c0e0f | p@chr17:932340..932343, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr17:932340..932343,-#_04ac9f38903e8dc2e7f3c1e1cb9c0e0f | p@chr17:932340..932343, - |
| 1.22e-75 | FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_39f7fa8ca300d8d8ac47c9459ce281d6 | p1@SERPINE3 |
| 1.22e-75 | FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_39f7fa8ca300d8d8ac47c9459ce281d6 | p1@SERPINE3 |
| 2.63e-75 | FFCP PHASE1:Hg19::chr2:219610798..219610810,+#_98aff972ff69529267a5dbe51023e143 | p17@TTLL4 |
| 2.63e-75 | FFCP PHASE2:Hg19::chr2:219610798..219610810,+#_98aff972ff69529267a5dbe51023e143 | p17@TTLL4 |
| 2.83e-66 | FFCP PHASE2:Hg19::chr17:1420239..1420279,-#_5e143518337d08e804fb801ff158fe90 | p9@INPP5K |
| 2.83e-66 | FFCP PHASE1:Hg19::chr1:153476496..153476503,+#_5e143518337d08e804fb801ff158fe90 | p@chr1:153476496..153476503, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_5e143518337d08e804fb801ff158fe90 | p@chr2:165170873..165170919, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_5e143518337d08e804fb801ff158fe90 | p@chr13:51913893..51913901, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr22:41734286..41734290,+#_5e143518337d08e804fb801ff158fe90 | p@chr22:41734286..41734290, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_5e143518337d08e804fb801ff158fe90 | p3@ENST00000558781 |
| 2.83e-66 | FFCP PHASE2:Hg19::chr1:153476496..153476503,+#_5e143518337d08e804fb801ff158fe90 | p@chr1:153476496..153476503, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr12:208292..208304,+#_5e143518337d08e804fb801ff158fe90 | p@chr12:208292..208304, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_5e143518337d08e804fb801ff158fe90 | p@chr21:45724075..45724081, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_5e143518337d08e804fb801ff158fe90 | p@chr5:149250331..149250335, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_5e143518337d08e804fb801ff158fe90 | p@chr5:149250331..149250335, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_5e143518337d08e804fb801ff158fe90 | p@chr21:45724075..45724081, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr13:99135420..99135443,-#_5e143518337d08e804fb801ff158fe90 | p@chr13:99135420..99135443, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr12:208274..208283,+#_5e143518337d08e804fb801ff158fe90 | p@chr12:208274..208283, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_5e143518337d08e804fb801ff158fe90 | p@chr18:39859562..39859566, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr12:208292..208304,+#_5e143518337d08e804fb801ff158fe90 | p@chr12:208292..208304, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_5e143518337d08e804fb801ff158fe90 | p@chr3:39827273..39827281, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_5e143518337d08e804fb801ff158fe90 | p3@ENST00000558781 |
| 2.83e-66 | FFCP PHASE2:Hg19::chr11:639444..639447,+#_5e143518337d08e804fb801ff158fe90 | p@chr11:639444..639447, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_5e143518337d08e804fb801ff158fe90 | p@chr13:51913893..51913901, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_5e143518337d08e804fb801ff158fe90 | p@chr18:39859562..39859566, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_5e143518337d08e804fb801ff158fe90 | p@chr3:39827273..39827281, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr17:1420239..1420279,-#_5e143518337d08e804fb801ff158fe90 | p9@INPP5K |
| 2.83e-66 | FFCP PHASE2:Hg19::chr13:99135420..99135443,-#_5e143518337d08e804fb801ff158fe90 | p@chr13:99135420..99135443, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr11:639444..639447,+#_5e143518337d08e804fb801ff158fe90 | p@chr11:639444..639447, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr2:165170873..165170919,-#_5e143518337d08e804fb801ff158fe90 | p@chr2:165170873..165170919, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr12:208274..208283,+#_5e143518337d08e804fb801ff158fe90 | p@chr12:208274..208283, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr22:41734286..41734290,+#_5e143518337d08e804fb801ff158fe90 | p@chr22:41734286..41734290, + |
| 4.34e-66 | FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_f6b6f99a624c6ba0ccad5eb8e689cd49 | p@chr3:69928426..69928436, + |
| 4.34e-66 | FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_f6b6f99a624c6ba0ccad5eb8e689cd49 | p@chr3:69928426..69928436, + |
| 5.13e-66 | FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_5d7dc3478c4aaaead07e514103cb2390 | p@chr1:43533230..43533270, + |
| 5.13e-66 | FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_5d7dc3478c4aaaead07e514103cb2390 | p@chr1:43533230..43533270, + |
| 1.01e-59 | FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_1edd7d200744b265c16395f483db8797 | p@chr9:140088882..140088898, - |
| 1.01e-59 | FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_1edd7d200744b265c16395f483db8797 | p@chr9:140088882..140088898, - |
| 1.82e-59 | FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_d24a7edc594bf63de026cca785d5599f | p5@MFRP, p6@C1QTNF5 |
| 1.82e-59 | FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_d24a7edc594bf63de026cca785d5599f | p@chr16:84228961..84228982, + |
| 1.82e-59 | FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_d24a7edc594bf63de026cca785d5599f | p5@MFRP, p6@C1QTNF5 |
| 1.82e-59 | FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_d24a7edc594bf63de026cca785d5599f | p@chr16:84228961..84228982, + |
| 6.44e-59 | FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_c85daadb8ff104d51f0989a5548d36df | p5@CLIC6 |
| 6.44e-59 | FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_c85daadb8ff104d51f0989a5548d36df | p5@CLIC6 |
| 1.58e-53 | FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_19eb2c2291595ad86dca8d0412d96573 | p@chr13:99135278..99135298, - |
| 1.58e-53 | FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_19eb2c2291595ad86dca8d0412d96573 | p@chr13:99135278..99135298, - |
| 9.03e-53 | FFCP PHASE2:Hg19::chr1:205226309..205226329,+#_eaee61f99349da4dc8017d0c5295a54f | p4@TMCC2 |
| 9.03e-53 | FFCP PHASE1:Hg19::chr1:205226309..205226329,+#_eaee61f99349da4dc8017d0c5295a54f | p4@TMCC2 |
| 3.84e-50 | FFCP PHASE2:Hg19::chr17:932596..932605,-#_3007b4edd6cf8dbc1e7e11fdd0ed74cd | p@chr17:932596..932605, - |
| 3.84e-50 | FFCP PHASE1:Hg19::chr17:932596..932605,-#_3007b4edd6cf8dbc1e7e11fdd0ed74cd | p@chr17:932596..932605, - |
| 5.37e-50 | FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_6d23fd53a803b4773c409bd7ad83f028 | p1@SLC16A8 |
| 5.37e-50 | FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_6d23fd53a803b4773c409bd7ad83f028 | p1@SLC16A8 |
| 8.88e-50 | FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_27996b8a03bd8d8458e8eb276a6807d8 | p@chr2:235591306..235591328, + |
| 8.88e-50 | FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_27996b8a03bd8d8458e8eb276a6807d8 | p@chr2:235591306..235591328, + |
| 1.05e-49 | FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_4e6e84acc598f53e17f59dc673ec086b | p@chr3:183733654..183733680, - |
| 1.05e-49 | FFCP PHASE1:Hg19::chrX:96819517..96819540,-#_4e6e84acc598f53e17f59dc673ec086b | p1@DIAPH2-AS1 |
| 1.05e-49 | FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_4e6e84acc598f53e17f59dc673ec086b | p@chr3:183733654..183733680, - |
| 1.05e-49 | FFCP PHASE2:Hg19::chrX:96819517..96819540,-#_4e6e84acc598f53e17f59dc673ec086b | p1@DIAPH2-AS1 |
| 1.24e-49 | FFCP PHASE1:Hg19::chr16:89441550..89441568,-#_3bb74a9650b7e3ff2920f77ee9e2606c | p@chr16:89441550..89441568, - |
| 1.24e-49 | FFCP PHASE2:Hg19::chr16:89441550..89441568,-#_3bb74a9650b7e3ff2920f77ee9e2606c | p@chr16:89441550..89441568, - |
| 1.73e-49 | FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_d78ecb33e00c153ff30db7d031fdf328 | p@chr3:98672197..98672201, + |
| 1.73e-49 | FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_d78ecb33e00c153ff30db7d031fdf328 | p@chr3:98672197..98672201, + |
| 5.28e-49 | FFCP PHASE1:Hg19::chr14:57277163..57277168,-#_80126e6745965d48daf13cfbfaa0ab3f | p4@OTX2 |
| 5.28e-49 | FFCP PHASE2:Hg19::chr14:57277163..57277168,-#_80126e6745965d48daf13cfbfaa0ab3f | p4@OTX2 |
| 9.58e-49 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_03bc21c1302a0211c94164da72a6d0b2 | p@chr14:87636652..87636657, - |
| 9.58e-49 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_03bc21c1302a0211c94164da72a6d0b2 | p@chr14:87636652..87636657, - |
| 1.38e-48 | FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_4f43062cb330d91205bff7520926b6e2 | p@chr3:69928371..69928385, + |
| 1.38e-48 | FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_4f43062cb330d91205bff7520926b6e2 | p@chr3:69928371..69928385, + |
| 2.88e-48 | FFCP PHASE2:Hg19::chr12:78359999..78360035,+#_1e3d42d040a935c80bab9d8ee78fa61c | p13@NAV3 |
| 2.88e-48 | FFCP PHASE1:Hg19::chr12:78359999..78360035,+#_1e3d42d040a935c80bab9d8ee78fa61c | p13@NAV3 |
| 3.25e-48 | FFCP PHASE1:Hg19::chr1:53608289..53608315,-#_04c19f32c0ea0fb995c840243ffd0621 | p1@SLC1A7 |
| 3.25e-48 | FFCP PHASE2:Hg19::chr1:53608289..53608315,-#_04c19f32c0ea0fb995c840243ffd0621 | p1@SLC1A7 |
| 6.65e-45 | FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_68ba76455c0774480442df5618717004 | p3@CLIC6 |
| 6.65e-45 | FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_68ba76455c0774480442df5618717004 | p3@CLIC6 |
| 9.76e-45 | FFCP PHASE1:Hg19::chr2:219610770..219610777,+#_b9c6a089e1fe6b5c7a48fb230064ad86 | p19@TTLL4 |
| 9.76e-45 | FFCP PHASE2:Hg19::chr2:219610770..219610777,+#_b9c6a089e1fe6b5c7a48fb230064ad86 | p19@TTLL4 |
| 9.76e-45 | FFCP PHASE1:Hg19::chr21:16031159..16031171,-#_b9c6a089e1fe6b5c7a48fb230064ad86 | p3@LOC388813 |
| 9.76e-45 | FFCP PHASE2:Hg19::chr21:16031159..16031171,-#_b9c6a089e1fe6b5c7a48fb230064ad86 | p3@LOC388813 |
| 9.76e-45 | FFCP PHASE1:Hg19::chr7:129028525..129028531,+#_b9c6a089e1fe6b5c7a48fb230064ad86 | p32@AHCYL2 |
| 9.76e-45 | FFCP PHASE2:Hg19::chr9:111764519..111764525,-#_b9c6a089e1fe6b5c7a48fb230064ad86 | p@chr9:111764519..111764525, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
