UBERON:0003056: Difference between revisions
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|located_in= | |located_in= | ||
|name=pre-chordal neural plate | |name=pre-chordal neural plate | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0003075 | |part_of=UBERON:0003075 | ||
Latest revision as of 17:35, 12 September 2014
| Name: | pre-chordal neural plate | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator] | ||
| Xrefs: |
| ||
| Synonyms: | "anterior neural plate" RELATED [] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:XAO_0000045-ZFA_0007016 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0005291(embryonic tissue) |
|---|---|
| part_of: | UBERON:0003075(neural plate) |
Children
| develops from: | UBERON:0003071 (eye primordium),UBERON:0003080 (anterior neural tube) |
|---|---|
| part of: | UBERON:0003071 (eye primordium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003056 (pre-chordal neural plate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.29e-94 | FFCP PHASE2:Hg19::chr11:31839488..31839515,-#_20bdebb295e78d2d1523406849e2a515 | p3@PAX6 |
| 5.29e-94 | FFCP PHASE1:Hg19::chr11:31839488..31839515,-#_20bdebb295e78d2d1523406849e2a515 | p3@PAX6 |
| 7.01e-94 | FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_1e56a924019091ac15f91de095ab09f4 | p1@NR2E1 |
| 7.01e-94 | FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_1e56a924019091ac15f91de095ab09f4 | p1@NR2E1 |
| 5.34e-93 | FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_b73139ac7844d220f17c02c651957a65 | p@chr5:89977201..89977236, + |
| 5.34e-93 | FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_b73139ac7844d220f17c02c651957a65 | p@chr5:89977201..89977236, + |
| 6.98e-88 | FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_f15e4000ce79f40dc8c558f504aca029 | p5@ST8SIA3 |
| 6.98e-88 | FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_f15e4000ce79f40dc8c558f504aca029 | p5@ST8SIA3 |
| 8.41e-86 | FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_fd518c617ac6e7d2fcfa8831d5cbee73 | p5@PHACTR1 |
| 8.41e-86 | FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_fd518c617ac6e7d2fcfa8831d5cbee73 | p5@PHACTR1 |
| 7.05e-85 | FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_5f6f9ea38cbc740eb060417ed1b0bd6f | p3@CTNND2 |
| 7.05e-85 | FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_5f6f9ea38cbc740eb060417ed1b0bd6f | p3@CTNND2 |
| 1.35e-84 | FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_b9ac7047871f925b462c76f3c13d07d2 | p6@PSD |
| 1.35e-84 | FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_b9ac7047871f925b462c76f3c13d07d2 | p6@PSD |
| 1.37e-84 | FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_8d8e36cf030abcb64442a6fb5bb2d29e | p3@PHACTR1 |
| 1.37e-84 | FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_8d8e36cf030abcb64442a6fb5bb2d29e | p3@PHACTR1 |
| 4.78e-83 | FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_9ae421e39351816ec6cb03d7c154aafb | p@chr20:61806320..61806344, + |
| 4.78e-83 | FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_9ae421e39351816ec6cb03d7c154aafb | p@chr20:61806320..61806344, + |
| 7.13e-83 | FFCP PHASE2:Hg19::chr8:18541544..18541592,-#_6dee95eba72e031c600ea4a5c9f6b773 | p2@PSD3 |
| 7.13e-83 | FFCP PHASE1:Hg19::chr8:18541544..18541592,-#_6dee95eba72e031c600ea4a5c9f6b773 | p2@PSD3 |
| 7.19e-83 | FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_703d64242be40c631757a2c407203db4 | p10@GPM6B |
| 7.19e-83 | FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_703d64242be40c631757a2c407203db4 | p10@GPM6B |
| 1.73e-82 | FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_0bed3e7165d1c4b71321c3435bc8c4f1 | p6@GPM6B |
| 1.73e-82 | FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_0bed3e7165d1c4b71321c3435bc8c4f1 | p6@GPM6B |
| 2.68e-82 | FFCP PHASE2:Hg19::chr4:165305086..165305179,-#_fd0494280b0d8e3857ac54abb59ebf36 | p2@MARCH1 |
| 2.68e-82 | FFCP PHASE1:Hg19::chr4:165305086..165305179,-#_fd0494280b0d8e3857ac54abb59ebf36 | p2@MARCH1 |
| 1.94e-81 | FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_aed8a47fce010c48cf54ca1a37648d0f | p2@FXYD7 |
| 1.94e-81 | FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_aed8a47fce010c48cf54ca1a37648d0f | p2@FXYD7 |
| 3.84e-81 | FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_37ac19ff73fdc53dce2ac9f4a4ba301a | p5@MKL2 |
| 3.84e-81 | FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_37ac19ff73fdc53dce2ac9f4a4ba301a | p5@MKL2 |
| 5.89e-81 | FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_778fc0fc08ef950aeccefc584bc6ff44 | p9@GPM6B |
| 5.89e-81 | FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_778fc0fc08ef950aeccefc584bc6ff44 | p9@GPM6B |
| 1.07e-80 | FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_26d324ed94d5c398107f7154a2761f1d | p4@ASTN1 |
| 1.07e-80 | FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_26d324ed94d5c398107f7154a2761f1d | p4@ASTN1 |
| 6.2e-79 | FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_c5dea91f6317bf3567e27b1bdd4d032c | p2@LMTK3 |
| 6.2e-79 | FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_c5dea91f6317bf3567e27b1bdd4d032c | p2@LMTK3 |
| 2.83e-78 | FFCP PHASE2:Hg19::chr19:39006729..39006756,+#_2a2bb6d193d100a28b7c49e31bba2681 | p@chr19:39006729..39006756, + |
| 2.83e-78 | FFCP PHASE1:Hg19::chr19:39006729..39006756,+#_2a2bb6d193d100a28b7c49e31bba2681 | p@chr19:39006729..39006756, + |
| 4.61e-78 | FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_c04ada59ac84c96ccc448d5fe223f7f7 | p1@uc003ppd.1 |
| 4.61e-78 | FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_c04ada59ac84c96ccc448d5fe223f7f7 | p1@uc003ppd.1 |
| 7.82e-78 | FFCP PHASE2:Hg19::chr19:30016395..30016433,+#_2f494b1d3194ecb5b50f1364e1fdc382 | p@chr19:30016395..30016433, + |
| 7.82e-78 | FFCP PHASE1:Hg19::chr19:30016395..30016433,+#_2f494b1d3194ecb5b50f1364e1fdc382 | p@chr19:30016395..30016433, + |
| 7.99e-78 | FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_ee83ae304fdaa1cf7e56ac54443fd286 | p@chr4:6514469..6514483, - |
| 7.99e-78 | FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_ee83ae304fdaa1cf7e56ac54443fd286 | p@chr4:6514469..6514483, - |
| 9.92e-78 | FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_177525fecdcdf4f8fdeb8c5eca51a0c9 | p5@OPCML |
| 9.92e-78 | FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_177525fecdcdf4f8fdeb8c5eca51a0c9 | p5@OPCML |
| 1.06e-77 | FFCP PHASE1:Hg19::chr10:62149542..62149590,-#_a8f4028327a7ddc357f8395e47b0a49d | p1@ANK3 |
| 1.06e-77 | FFCP PHASE2:Hg19::chr10:62149542..62149590,-#_a8f4028327a7ddc357f8395e47b0a49d | p1@ANK3 |
| 1.12e-77 | FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_1d7388654be1e344f96f0807c057be9a | p3@GRIN2B |
| 1.12e-77 | FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_1d7388654be1e344f96f0807c057be9a | p3@GRIN2B |
| 3.17e-77 | FFCP PHASE1:Hg19::chr11:62475005..62475041,-#_6b0ca751a2da7b85503e09460992f65b | p6@BSCL2 |
| 3.17e-77 | FFCP PHASE2:Hg19::chr11:62475005..62475041,-#_6b0ca751a2da7b85503e09460992f65b | p6@BSCL2 |
| 4.8e-77 | FFCP PHASE2:Hg19::chr18:59000657..59000672,+#_dcd1ea3d0454820553c0da3e175ddfd1 | p1@CDH20 |
| 4.8e-77 | FFCP PHASE1:Hg19::chr18:59000657..59000672,+#_dcd1ea3d0454820553c0da3e175ddfd1 | p1@CDH20 |
| 4.84e-77 | FFCP PHASE1:Hg19::chr4:21792588..21792593,-#_bedca31051a9a1827bc0aa496c846562 | p@chr4:21792588..21792593, - |
| 4.84e-77 | FFCP PHASE2:Hg19::chr4:21792588..21792593,-#_bedca31051a9a1827bc0aa496c846562 | p@chr4:21792588..21792593, - |
| 5.21e-77 | FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_be0cedde9525106e8bb28e98192f9933 | p4@DLGAP3 |
| 5.21e-77 | FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_be0cedde9525106e8bb28e98192f9933 | p4@DLGAP3 |
| 7.45e-77 | FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_b9968d81d9342708654349ea70e47a2e | p6@DPP6 |
| 7.45e-77 | FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_b9968d81d9342708654349ea70e47a2e | p6@DPP6 |
| 8.33e-77 | FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_99416026f6c736c2b202189d9845c948 | p4@DPP6 |
| 8.33e-77 | FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_99416026f6c736c2b202189d9845c948 | p4@DPP6 |
| 1.48e-76 | FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_6ece1b19536ec13dcfa4af17c70da159 | p8@PHACTR1 |
| 1.48e-76 | FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_6ece1b19536ec13dcfa4af17c70da159 | p8@PHACTR1 |
| 1.66e-76 | FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_2202735e26e914b6f7cbf9611941d1ae | p4@PHACTR1 |
| 1.66e-76 | FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_2202735e26e914b6f7cbf9611941d1ae | p4@PHACTR1 |
| 1.7e-76 | FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_23ede77bd8ad33433c00188b770e899f | p8@RIMS2 |
| 1.7e-76 | FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_23ede77bd8ad33433c00188b770e899f | p8@RIMS2 |
| 1.84e-76 | FFCP PHASE1:Hg19::chr6:69942657..69942671,+#_5920093ba37f0c66efea414602e790d3 | p@chr6:69942657..69942671, + |
| 1.84e-76 | FFCP PHASE2:Hg19::chr6:69942657..69942671,+#_5920093ba37f0c66efea414602e790d3 | p@chr6:69942657..69942671, + |
| 1.89e-76 | FFCP PHASE1:Hg19::chr10:10504464..10504475,+#_673a187b9bc78863b88062bd402c749a | p@chr10:10504464..10504475, + |
| 1.89e-76 | FFCP PHASE2:Hg19::chr10:10504464..10504475,+#_673a187b9bc78863b88062bd402c749a | p@chr10:10504464..10504475, + |
| 2.63e-76 | FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_b53c750fc40bd97ae7685897d9d01cb3 | p8@LRRC7 |
| 2.63e-76 | FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_b53c750fc40bd97ae7685897d9d01cb3 | p8@LRRC7 |
| 2.68e-76 | FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_aaae87610dab2ca7eb9501da883aa0de | p1@ENST00000412957 |
| 2.68e-76 | FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_aaae87610dab2ca7eb9501da883aa0de | p1@ENST00000412957 |
| 4.52e-76 | FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_e5d86f354e5097c23ba0db2591c3a498 | p3@DOCK4 |
| 4.52e-76 | FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_e5d86f354e5097c23ba0db2591c3a498 | p3@DOCK4 |
| 4.91e-76 | FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_5ec0761f10b9928b32ea4b70ec8315e4 | p3@GPR98 |
| 4.91e-76 | FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_5ec0761f10b9928b32ea4b70ec8315e4 | p3@GPR98 |
| 6.45e-76 | FFCP PHASE1:Hg19::chr1:197237352..197237414,+#_8d03e8b3b07296bd1107db14836fcd93 | p2@CRB1 |
| 6.45e-76 | FFCP PHASE2:Hg19::chr1:197237352..197237414,+#_8d03e8b3b07296bd1107db14836fcd93 | p2@CRB1 |
| 7.05e-76 | FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_51089a543a6f08bf5bcf05434547e11f | p2@DLGAP3 |
| 7.05e-76 | FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_51089a543a6f08bf5bcf05434547e11f | p2@DLGAP3 |
| 1.25e-75 | FFCP PHASE2:Hg19::chr19:35631736..35631759,+#_d5f1acb7dd8455ae085c20a1aa144b9a | p@chr19:35631736..35631759, + |
| 1.25e-75 | FFCP PHASE1:Hg19::chr19:35631736..35631759,+#_d5f1acb7dd8455ae085c20a1aa144b9a | p@chr19:35631736..35631759, + |
| 1.68e-75 | FFCP PHASE1:Hg19::chr3:10749696..10749745,-#_bf55d68649fa5bb9d9328e417141e5ea | p3@ATP2B2 |
| 1.68e-75 | FFCP PHASE2:Hg19::chr3:10749696..10749745,-#_bf55d68649fa5bb9d9328e417141e5ea | p3@ATP2B2 |
| 2.61e-75 | FFCP PHASE1:Hg19::chr5:146435501..146435530,-#_9fff7a1688c66532d30bd692f9d943e7 | p3@PPP2R2B |
| 2.61e-75 | FFCP PHASE2:Hg19::chr5:146435501..146435530,-#_9fff7a1688c66532d30bd692f9d943e7 | p3@PPP2R2B |
| 3.3e-75 | FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_a74affec6b55c87c57b209ab59b2e9b7 | p3@NRXN1 |
| 3.3e-75 | FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_a74affec6b55c87c57b209ab59b2e9b7 | p3@NRXN1 |
| 4.65e-75 | FFCP PHASE2:Hg19::chr4:165304614..165304693,-#_bb22a9252a9f8553b2a38433b3f1fe4b | p3@MARCH1 |
| 4.65e-75 | FFCP PHASE1:Hg19::chr4:165304614..165304693,-#_bb22a9252a9f8553b2a38433b3f1fe4b | p3@MARCH1 |
| 5.31e-75 | FFCP PHASE2:Hg19::chr15:30261391..30261419,-#_86a72b8b0b19d0c8041d6a329f8a6003 | p14@TJP1 |
| 5.31e-75 | FFCP PHASE1:Hg19::chr15:30261391..30261419,-#_86a72b8b0b19d0c8041d6a329f8a6003 | p14@TJP1 |
| 5.33e-75 | FFCP PHASE1:Hg19::chr5:138210954..138210965,-#_71f801c1385c65b30a6d93317c80d7ec | p4@LRRTM2 |
| 5.33e-75 | FFCP PHASE2:Hg19::chr5:138210954..138210965,-#_71f801c1385c65b30a6d93317c80d7ec | p4@LRRTM2 |
| 6.62e-75 | FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_847d5fcc21f473690d446edc46cb36d2 | p2@NAALAD2 |
| 6.62e-75 | FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_847d5fcc21f473690d446edc46cb36d2 | p2@NAALAD2 |
