FFCP PHASE2:Hg19::chr3:12800751..12800777,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:55287 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:25620 |TSScla...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=55287 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=25620 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=C9JID5 | ||
|association_with_transcript=0bp_to_ENST00000435218,ENST00000435575_5end | |association_with_transcript=0bp_to_ENST00000435218,ENST00000435575_5end | ||
|cluster_id=chr3:12800751..12800777,- | |cluster_id=chr3:12800751..12800777,- | ||
Latest revision as of 06:38, 20 September 2015
| Short description: | p1@TMEM40 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_TMEM40_5end |
| Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
| Association with transcript: | 0bp_to_ENST00000435218, ENST00000435575_5end |
| EntrezGene: | TMEM40 |
| HGNC: | 25620 |
| UniProt: | C9JID5 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@TMEM40 |
|---|
0
50
100
150
200
250
300
350
400
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 3.46e-30 | 253 |
| endo-epithelial cell | 6.75e-22 | 42 |
| endodermal cell | 2.91e-16 | 58 |
| respiratory epithelial cell | 1.26e-11 | 13 |
| epithelial cell of alimentary canal | 3.04e-09 | 20 |
| general ecto-epithelial cell | 4.50e-09 | 14 |
| epithelial cell of tracheobronchial tree | 1.08e-07 | 9 |
| epithelial cell of lower respiratory tract | 1.08e-07 | 9 |
| squamous epithelial cell | 1.83e-07 | 63 |
Showing 1 to 9 of 9 entries
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 9.45e-16 | 160 |
| endoderm | 9.45e-16 | 160 |
| presumptive endoderm | 9.45e-16 | 160 |
| respiratory system | 1.26e-15 | 74 |
| respiratory tract | 7.83e-14 | 54 |
| respiratory primordium | 5.60e-11 | 38 |
| endoderm of foregut | 5.60e-11 | 38 |
| digestive system | 6.55e-10 | 145 |
| digestive tract | 6.55e-10 | 145 |
| primitive gut | 6.55e-10 | 145 |
Showing 1 to 10 of 28 entries
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 5.29e-12 | 106 |
| squamous cell carcinoma | 1.34e-10 | 14 |
| cell type cancer | 1.85e-08 | 143 |
Showing 1 to 3 of 3 entries
