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Revision as of 17:16, 15 June 2012

Name:lymphoid system
Definition:"The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system (Wikipedia)." Wikipedia:Lymphoid_system
Xrefs:
links:

AAO:0010522
EFO:0000870
EHDAA:8677
EHDAA2:0001043
EMAPA:18248
FMA:74594
GAID:931
[1]
MA:0002435
MAT:0000197
MIAA:0000197
ncithesaurus:Lymphatic_System
OpenCyc:Mx4rwQAKT5wpEbGdrcN5Y29ycA
SCTID:362589007
VHOG:0000842
XAO:0003199

ZFA:0000385
Synonyms: "lymphatic circulatory system" RELATED [UBERON:cjm]
"lymphatic system" NARROW [ZFA:0000385]
Comments:We follow FMA and MA in distinguishing between lymphatic system and lymphoid system, with lymhoid tissue part of the non-lymphatic component, although these terms are often used interchangeably. We assume the ZFA term lymphatic tissue actually corresponds to the broader class (e.g. ZFA lymph node in the ZFA lymphatic system). See tracker for more comments.
Alt_id: UBERON:0002096
UBERON:MA_0002435-FMA_74594
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster)
part_of:UBERON:0002193(hemolymphoid system),UBERON:0002405(immune system)



Children

part of:UBERON:0000029 (lymph node),UBERON:0001744 (lymphoid tissue),UBERON:0004536 (lymph vasculature),UBERON:0006558 (lymphatic part of lymphoid system)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002465 (lymphoid system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr16:15705318..15705342,+#_6995975398f133fbd51e4bd7829cac3fp@chr16:15705318..15705342, +
1.58e-86FFCP PHASE1:Mm9::chr16:15705318..15705342,+#_6995975398f133fbd51e4bd7829cac3fp@chr16:15705318..15705342, +
8.32e-82FFCP PHASE2:Hg19::chr9:13432964..13432971,-#_f16b1a7c61edf32cdd1574f38d7f95c1p@chr9:13432964..13432971, -
8.32e-82FFCP PHASE1:Hg19::chr9:13432964..13432971,-#_f16b1a7c61edf32cdd1574f38d7f95c1p@chr9:13432964..13432971, -
1.33e-65FFCP PHASE2:Mm9::chr12:115694343..115694368,-#_d5d055c22bd7ae983221a314a6f0e29fp1@uc007pgz.1
1.33e-65FFCP PHASE1:Mm9::chr12:115694343..115694368,-#_d5d055c22bd7ae983221a314a6f0e29fp1@uc007pgz.1
1.33e-65FFCP PHASE2:Mm9::chr12:114546123..114546134,-#_d5d055c22bd7ae983221a314a6f0e29fp@chr12:114546123..114546134, -
1.33e-65FFCP PHASE1:Mm9::chr12:114546123..114546134,-#_d5d055c22bd7ae983221a314a6f0e29fp@chr12:114546123..114546134, -
2.21e-65FFCP PHASE1:Mm9::chr12:116073906..116073921,-#_68fa8616585334bdcf90e1ce170bcc00p@chr12:116073906..116073921, -
2.21e-65FFCP PHASE2:Mm9::chr12:114545296..114545316,-#_68fa8616585334bdcf90e1ce170bcc00p2@uc007pgn.1
2.21e-65FFCP PHASE2:Mm9::chr12:116073906..116073921,-#_68fa8616585334bdcf90e1ce170bcc00p@chr12:116073906..116073921, -
2.21e-65FFCP PHASE1:Mm9::chr12:114545296..114545316,-#_68fa8616585334bdcf90e1ce170bcc00p2@uc007pgn.1
1.84e-63FFCP PHASE1:Hg19::chr1:65344872..65344880,-#_f5ee18d9335476f70f2b78d05186a685p15@JAK1
1.84e-63FFCP PHASE2:Hg19::chr1:65344872..65344880,-#_f5ee18d9335476f70f2b78d05186a685p15@JAK1
1.75e-61FFCP PHASE1:Hg19::chr3:30560368..30560379,+#_e45af82593258e7d210fec6576c49736p@chr3:30560368..30560379, +
1.75e-61FFCP PHASE2:Hg19::chr3:30560368..30560379,+#_e45af82593258e7d210fec6576c49736p@chr3:30560368..30560379, +
3.74e-59FFCP PHASE2:Hg19::chr17:28534912..28534942,-#_7c98fcfc53f3dc5ff65f5df30e94e9fap@chr17:28534912..28534942, -
3.74e-59FFCP PHASE1:Hg19::chr17:28534912..28534942,-#_7c98fcfc53f3dc5ff65f5df30e94e9fap@chr17:28534912..28534942, -
3.28e-58FFCP PHASE1:Mm9::chr8:23117055..23117056,-#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr8:23117055..23117056, -
3.28e-58FFCP PHASE1:Mm9::chr12:115979100..115979103,-#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr12:115979100..115979103, -
3.28e-58FFCP PHASE2:Mm9::chr2:63059909..63059910,+#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr2:63059909..63059910, +
3.28e-58FFCP PHASE1:Mm9::chr2:63059909..63059910,+#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr2:63059909..63059910, +
3.28e-58FFCP PHASE1:Mm9::chr6:69701328..69701342,-#_9d97d91a4a4353374ee4a9b7bd7f26e1p1@ENSMUST00000114212
3.28e-58FFCP PHASE1:Mm9::chr2:14201203..14201212,+#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr2:14201203..14201212, +
3.28e-58FFCP PHASE1:Mm9::chr19:38060099..38060102,+#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr19:38060099..38060102, +
3.28e-58FFCP PHASE1:Mm9::chr6:69785263..69785268,-#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr6:69785263..69785268, -
3.28e-58FFCP PHASE2:Mm9::chr12:115974938..115974945,-#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr12:115974938..115974945, -
3.28e-58FFCP PHASE1:Mm9::chr17:59564142..59564144,+#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr17:59564142..59564144, +
3.28e-58FFCP PHASE2:Mm9::chr12:116051009..116051016,-#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr12:116051009..116051016, -
3.28e-58FFCP PHASE2:Mm9::chr19:38060099..38060102,+#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr19:38060099..38060102, +
3.28e-58FFCP PHASE2:Mm9::chr12:115979100..115979103,-#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr12:115979100..115979103, -
3.28e-58FFCP PHASE2:Mm9::chr6:69701328..69701342,-#_9d97d91a4a4353374ee4a9b7bd7f26e1p1@ENSMUST00000114212
3.28e-58FFCP PHASE1:Mm9::chr9:69086930..69086933,+#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr9:69086930..69086933, +
3.28e-58FFCP PHASE2:Mm9::chr6:69785263..69785268,-#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr6:69785263..69785268, -
3.28e-58FFCP PHASE2:Mm9::chr2:14201203..14201212,+#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr2:14201203..14201212, +
3.28e-58FFCP PHASE2:Mm9::chr17:59564142..59564144,+#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr17:59564142..59564144, +
3.28e-58FFCP PHASE1:Mm9::chr19:31038353..31038362,+#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr19:31038353..31038362, +
3.28e-58FFCP PHASE2:Mm9::chr9:69086930..69086933,+#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr9:69086930..69086933, +
3.28e-58FFCP PHASE1:Mm9::chr12:115974938..115974945,-#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr12:115974938..115974945, -
3.28e-58FFCP PHASE2:Mm9::chr8:23117055..23117056,-#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr8:23117055..23117056, -
3.28e-58FFCP PHASE2:Mm9::chr19:31038353..31038362,+#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr19:31038353..31038362, +
3.28e-58FFCP PHASE1:Mm9::chr12:116051009..116051016,-#_9d97d91a4a4353374ee4a9b7bd7f26e1p@chr12:116051009..116051016, -
9.6e-55FFCP PHASE2:Hg19::chr2:56149881..56149899,-#_305f001d7199e49d14add8bbf6f3762dp14@EFEMP1
9.6e-55FFCP PHASE1:Hg19::chr2:56149881..56149899,-#_305f001d7199e49d14add8bbf6f3762dp14@EFEMP1
1.03e-52FFCP PHASE2:Hg19::chr19:48613876..48613886,-#_d37e197d420e84ef98e6cdc5e40f7d48p7@PLA2G4C
1.03e-52FFCP PHASE1:Hg19::chr19:48613876..48613886,-#_d37e197d420e84ef98e6cdc5e40f7d48p7@PLA2G4C
2.44e-51FFCP PHASE2:Hg19::chr6:74848034..74848043,+#_19ee150e1b8f3910a80bd6ad0d73201ep@chr6:74848034..74848043, +
2.44e-51FFCP PHASE1:Hg19::chr6:74848034..74848043,+#_19ee150e1b8f3910a80bd6ad0d73201ep@chr6:74848034..74848043, +
1.12e-45FFCP PHASE1:Hg19::chr6:5054373..5054392,-#_e5bea54c3e84920708e7cd362ff4423ap1@AK126470
1.12e-45FFCP PHASE2:Hg19::chr6:5054373..5054392,-#_e5bea54c3e84920708e7cd362ff4423ap1@AK126470
1.4e-45FFCP PHASE2:Hg19::chr7:79998842..79998855,+#_01b2d8bfb6f45144e5b8539a1f23de42p25@CD36
1.4e-45FFCP PHASE1:Hg19::chr7:79998842..79998855,+#_01b2d8bfb6f45144e5b8539a1f23de42p25@CD36
1.57e-45FFCP PHASE2:Hg19::chr3:145968441..145968451,-#_91a9efd85dd73acbff918d139b9ff4d9p17@PLSCR4
1.57e-45FFCP PHASE1:Hg19::chr3:145968441..145968451,-#_91a9efd85dd73acbff918d139b9ff4d9p17@PLSCR4
1.77e-45FFCP PHASE2:Hg19::chr2:33661536..33661549,+#_8d2ef55a303257a32515648cd2e6d309p17@RASGRP3
1.77e-45FFCP PHASE1:Hg19::chr2:33661536..33661549,+#_8d2ef55a303257a32515648cd2e6d309p17@RASGRP3
1.98e-45FFCP PHASE1:Hg19::chr9:13446440..13446456,+#_639a94dd090220a680fa712ebd3d6ae5p2@ENST00000428006
1.98e-45FFCP PHASE2:Hg19::chr9:13446440..13446456,+#_639a94dd090220a680fa712ebd3d6ae5p2@ENST00000428006
4.18e-45FFCP PHASE2:Hg19::chr17:28534879..28534889,-#_6c29c6f2733ec0a984dbd016f40ffa0cp@chr17:28534879..28534889, -
4.18e-45FFCP PHASE2:Hg19::chr12:46807404..46807413,+#_6c29c6f2733ec0a984dbd016f40ffa0cp@chr12:46807404..46807413, +
4.18e-45FFCP PHASE1:Hg19::chr17:28534879..28534889,-#_6c29c6f2733ec0a984dbd016f40ffa0cp@chr17:28534879..28534889, -
4.18e-45FFCP PHASE1:Hg19::chr12:46807404..46807413,+#_6c29c6f2733ec0a984dbd016f40ffa0cp@chr12:46807404..46807413, +
5.64e-45FFCP PHASE1:Hg19::chr7:79998905..79998917,+#_c7965385c155d3bdb71d9a3e5cd78bffp26@CD36
5.64e-45FFCP PHASE2:Hg19::chr7:79998905..79998917,+#_c7965385c155d3bdb71d9a3e5cd78bffp26@CD36
1.66e-44FFCP PHASE1:Mm9::chr6:69714657..69714683,-#_5db4daba84fddaab6ec80d93118350ebp@chr6:69714657..69714683, -
1.66e-44FFCP PHASE2:Mm9::chr6:69714657..69714683,-#_5db4daba84fddaab6ec80d93118350ebp@chr6:69714657..69714683, -
4.58e-44FFCP PHASE1:Mm9::chr6:70592357..70592379,+#_78f7517b26463d709818d0ad3c4bbb27p@chr6:70592357..70592379, +
4.58e-44FFCP PHASE2:Mm9::chr6:70592357..70592379,+#_78f7517b26463d709818d0ad3c4bbb27p@chr6:70592357..70592379, +
1.76e-43FFCP PHASE1:Hg19::chr8:30300216..30300245,+#_02927e0e24e092c99de0a85e1f77b9f0p10@RBPMS
1.76e-43FFCP PHASE2:Hg19::chr8:30300216..30300245,+#_02927e0e24e092c99de0a85e1f77b9f0p10@RBPMS
1.45e-42FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_5484eecc86b53fd827524c2c4ac478cfp@chr4:38057595..38057624, -
1.45e-42FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_5484eecc86b53fd827524c2c4ac478cfp@chr4:38057595..38057624, -
2.0e-40FFCP PHASE1:Hg19::chr1:66723029..66723041,+#_31cf119cbf5999898ebf7716886f3ee8p54@PDE4B
2.0e-40FFCP PHASE2:Hg19::chr17:75873825..75873826,+#_31cf119cbf5999898ebf7716886f3ee8p@chr17:75873825..75873826, +
2.0e-40FFCP PHASE2:Hg19::chr11:108794429..108794441,+#_31cf119cbf5999898ebf7716886f3ee8p@chr11:108794429..108794441, +
2.0e-40FFCP PHASE2:Hg19::chr2:33661526..33661535,+#_31cf119cbf5999898ebf7716886f3ee8p23@RASGRP3
2.0e-40FFCP PHASE1:Hg19::chr4:114238344..114238353,+#_31cf119cbf5999898ebf7716886f3ee8p58@ANK2
2.0e-40FFCP PHASE2:Hg19::chr1:66723029..66723041,+#_31cf119cbf5999898ebf7716886f3ee8p54@PDE4B
2.0e-40FFCP PHASE1:Hg19::chr11:108794408..108794422,+#_31cf119cbf5999898ebf7716886f3ee8p@chr11:108794408..108794422, +
2.0e-40FFCP PHASE1:Hg19::chr2:33661526..33661535,+#_31cf119cbf5999898ebf7716886f3ee8p23@RASGRP3
2.0e-40FFCP PHASE1:Hg19::chr11:108794429..108794441,+#_31cf119cbf5999898ebf7716886f3ee8p@chr11:108794429..108794441, +
2.0e-40FFCP PHASE1:Hg19::chr17:75873825..75873826,+#_31cf119cbf5999898ebf7716886f3ee8p@chr17:75873825..75873826, +
2.0e-40FFCP PHASE2:Hg19::chr4:114238344..114238353,+#_31cf119cbf5999898ebf7716886f3ee8p58@ANK2
2.0e-40FFCP PHASE2:Hg19::chr11:108794408..108794422,+#_31cf119cbf5999898ebf7716886f3ee8p@chr11:108794408..108794422, +
4.75e-40FFCP PHASE2:Hg19::chr4:38057520..38057536,-#_ad8efc3c9b241ad7d037c7c712e0dfb5p@chr4:38057520..38057536, -
4.75e-40FFCP PHASE1:Hg19::chr4:38057520..38057536,-#_ad8efc3c9b241ad7d037c7c712e0dfb5p@chr4:38057520..38057536, -
1.7e-39FFCP PHASE1:Mm9::chr1:40599829..40599836,+#_f063aca2384bca0f2d760f68e1ef17d1p@chr1:40599829..40599836, +
1.7e-39FFCP PHASE2:Mm9::chr1:40599829..40599836,+#_f063aca2384bca0f2d760f68e1ef17d1p@chr1:40599829..40599836, +
1.7e-39FFCP PHASE2:Mm9::chr6:28646564..28646565,-#_f063aca2384bca0f2d760f68e1ef17d1p@chr6:28646564..28646565, -
1.7e-39FFCP PHASE1:Mm9::chr2:45535559..45535562,+#_f063aca2384bca0f2d760f68e1ef17d1p@chr2:45535559..45535562, +
1.7e-39FFCP PHASE1:Mm9::chr6:28646564..28646565,-#_f063aca2384bca0f2d760f68e1ef17d1p@chr6:28646564..28646565, -
1.7e-39FFCP PHASE2:Mm9::chr6:143591339..143591345,+#_f063aca2384bca0f2d760f68e1ef17d1p@chr6:143591339..143591345, +
1.7e-39FFCP PHASE1:Mm9::chr6:143591339..143591345,+#_f063aca2384bca0f2d760f68e1ef17d1p@chr6:143591339..143591345, +
1.7e-39FFCP PHASE2:Mm9::chr19:32143349..32143352,-#_f063aca2384bca0f2d760f68e1ef17d1p@chr19:32143349..32143352, -
1.7e-39FFCP PHASE2:Mm9::chr2:45535559..45535562,+#_f063aca2384bca0f2d760f68e1ef17d1p@chr2:45535559..45535562, +
1.7e-39FFCP PHASE2:Mm9::chr8:25523566..25523573,+#_f063aca2384bca0f2d760f68e1ef17d1p@chr8:25523566..25523573, +
1.7e-39FFCP PHASE1:Mm9::chr8:25523566..25523573,+#_f063aca2384bca0f2d760f68e1ef17d1p@chr8:25523566..25523573, +
1.7e-39FFCP PHASE1:Mm9::chr19:32143349..32143352,-#_f063aca2384bca0f2d760f68e1ef17d1p@chr19:32143349..32143352, -
1.7e-39FFCP PHASE1:Mm9::chr12:115366227..115366256,-#_f063aca2384bca0f2d760f68e1ef17d1p@chr12:115366227..115366256, -
1.7e-39FFCP PHASE2:Mm9::chr12:115366227..115366256,-#_f063aca2384bca0f2d760f68e1ef17d1p@chr12:115366227..115366256, -

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