CL:0000746: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000746
|name=cardiac muscle cell
|namespace=cell
|def="A myocyte located in the heart. The contractile fiber resembles those of skeletal muscle but are only o...") |
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{{CL | {{CL | ||
|id=CL:0000746 | |id=CL:0000746 | ||
|name=cardiac | |name=cardiac myocyte | ||
|namespace= | |namespace=efo | ||
|def=" | |def="Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei." [GOC:mtg_cardiacconduct_nov11, GOC:tfm, ISBN:0323052908] | ||
|xref=BTO:0001539;;FMA:14067;;FMA:83808 | |xref=BTO:0001539;;FMA:14067;;FMA:83808 | ||
|is_a=CL:0000737;;CL:0002494 | |is_a=CL:0000187;;CL:0000737;;CL:0002494 | ||
|synonym="cardiac myocyte" EXACT [];;"cardiocyte" BROAD [];;"cardiomyocyte" EXACT [];;"heart muscle cell" EXACT [] | |synonym="cardiac myocyte" EXACT [];;"cardiocyte" BROAD [];;"cardiomyocyte" EXACT [];;"heart muscle cell" EXACT [] | ||
|comment= | |comment= | ||
| Line 19: | Line 19: | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of=UBERON: | |part_of=UBERON:0007100 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:38, 15 June 2012
| Name: | cardiac myocyte | ||
|---|---|---|---|
| Namespace: | efo | ||
| Definition: | "Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei." [GOC:mtg_cardiacconduct_nov11, GOC:tfm, ISBN:0323052908] | ||
| Xrefs: |
| ||
| Synonyms: |
"cardiac myocyte" EXACT [] "cardiocyte" BROAD [] "cardiomyocyte" EXACT [] "heart muscle cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000187(muscle cell),CL:0000737(striated muscle cell),CL:0002494(cardiocyte) |
|---|---|
| develops_from: | CL:0000513(cardiac muscle myoblast) |
| part_of: | UBERON:0007100(primary circulatory organ) |
Children
| derives from: | FF:0000106 (mouse cardiac myocyte sample),FF:0000118 (human cardiac myocyte sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11525-119I4 (Cardiac Myocyte, donor1)
- 11605-120I3 (Cardiac Myocyte, donor2)
- 11634-122C5 (Mouse Cardiac Myocytes, donor3)
- 11686-122I3 (Cardiac Myocyte, donor3)
- 11711-123C1 (Mouse Cardiac Myocytes, donor1)
- 11729-123E1 (Mouse Cardiac Myocytes, donor2)
Mouse (Mus musculus)
- 11525-119I4 (Cardiac Myocyte, donor1)
- 11605-120I3 (Cardiac Myocyte, donor2)
- 11634-122C5 (Mouse Cardiac Myocytes, donor3)
- 11686-122I3 (Cardiac Myocyte, donor3)
- 11711-123C1 (Mouse Cardiac Myocytes, donor1)
- 11729-123E1 (Mouse Cardiac Myocytes, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000746 (cardiac myocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:56096674..56096680,+#_a07bd44b75199458fa75e1dfe3da2dde | p@chr9:56096674..56096680, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr19:20567096..20567107,+#_a07bd44b75199458fa75e1dfe3da2dde | p3@E030003E18Rik |
| 1.58e-86 | FFCP PHASE1:Mm9::chr7:106471695..106471701,+#_a07bd44b75199458fa75e1dfe3da2dde | p@chr7:106471695..106471701, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:102766842..102766853,+#_a07bd44b75199458fa75e1dfe3da2dde | p@chr9:102766842..102766853, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:102766842..102766853,+#_a07bd44b75199458fa75e1dfe3da2dde | p@chr9:102766842..102766853, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr7:106471695..106471701,+#_a07bd44b75199458fa75e1dfe3da2dde | p@chr7:106471695..106471701, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr19:20567096..20567107,+#_a07bd44b75199458fa75e1dfe3da2dde | p3@E030003E18Rik |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:56096674..56096680,+#_a07bd44b75199458fa75e1dfe3da2dde | p@chr9:56096674..56096680, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:35238792..35238801,-#_f37fbdb4919f4b8e92f5acc5ff65cc01 | p@chr7:35238792..35238801, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:61929910..61929917,+#_f37fbdb4919f4b8e92f5acc5ff65cc01 | p60@PRKCH |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:35238792..35238801,-#_f37fbdb4919f4b8e92f5acc5ff65cc01 | p@chr7:35238792..35238801, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:61929910..61929917,+#_f37fbdb4919f4b8e92f5acc5ff65cc01 | p60@PRKCH |
| 2.4e-66 | FFCP PHASE2:Hg19::chrX:131545245..131545250,-#_067ea3e3bf6b0e8ab21e1443be73b9cc | p32@MBNL3 |
| 2.4e-66 | FFCP PHASE1:Hg19::chrX:131545245..131545250,-#_067ea3e3bf6b0e8ab21e1443be73b9cc | p32@MBNL3 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:91183204..91183213,+#_a053c1b7d47fbe47f2bbed625615067f | p@chr6:91183204..91183213, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:91183204..91183213,+#_a053c1b7d47fbe47f2bbed625615067f | p@chr6:91183204..91183213, + |
| 2.21e-65 | FFCP PHASE1:Mm9::chr19:20567153..20567160,+#_01b9468348f83ce6a3e94700a3c12fd7 | p7@E030003E18Rik |
| 2.21e-65 | FFCP PHASE2:Mm9::chr19:20567153..20567160,+#_01b9468348f83ce6a3e94700a3c12fd7 | p7@E030003E18Rik |
| 2.19e-53 | FFCP PHASE1:Hg19::chrX:131545301..131545315,-#_501f1fe5d153e8fa15b2becb2698d74a | p22@MBNL3 |
| 2.19e-53 | FFCP PHASE2:Hg19::chrX:131545301..131545315,-#_501f1fe5d153e8fa15b2becb2698d74a | p22@MBNL3 |
| 2.87e-53 | FFCP PHASE2:Hg19::chr4:2869695..2869706,+#_d534d07d17323034476789aac7abb61d | p30@ADD1 |
| 2.87e-53 | FFCP PHASE1:Hg19::chr4:2869695..2869706,+#_d534d07d17323034476789aac7abb61d | p30@ADD1 |
| 4.9e-53 | FFCP PHASE2:Mm9::chr19:20567067..20567078,+#_27a36d01d3c3ec5531abc3489e2da992 | p6@E030003E18Rik |
| 4.9e-53 | FFCP PHASE1:Mm9::chr7:117772048..117772059,+#_27a36d01d3c3ec5531abc3489e2da992 | p@chr7:117772048..117772059, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr8:11239175..11239178,-#_27a36d01d3c3ec5531abc3489e2da992 | p@chr8:11239175..11239178, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr6:91222464..91222477,+#_27a36d01d3c3ec5531abc3489e2da992 | p@chr6:91222464..91222477, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr3:103596528..103596539,-#_27a36d01d3c3ec5531abc3489e2da992 | p@chr3:103596528..103596539, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr7:117772048..117772059,+#_27a36d01d3c3ec5531abc3489e2da992 | p@chr7:117772048..117772059, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr3:103596528..103596539,-#_27a36d01d3c3ec5531abc3489e2da992 | p@chr3:103596528..103596539, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr11:43827555..43827566,+#_27a36d01d3c3ec5531abc3489e2da992 | p@chr11:43827555..43827566, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr8:11239175..11239178,-#_27a36d01d3c3ec5531abc3489e2da992 | p@chr8:11239175..11239178, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr6:91222464..91222477,+#_27a36d01d3c3ec5531abc3489e2da992 | p@chr6:91222464..91222477, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr19:20567067..20567078,+#_27a36d01d3c3ec5531abc3489e2da992 | p6@E030003E18Rik |
| 4.9e-53 | FFCP PHASE2:Mm9::chr11:43827555..43827566,+#_27a36d01d3c3ec5531abc3489e2da992 | p@chr11:43827555..43827566, + |
| 7.35e-53 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_a96318dfc385ed34dacd398c81617579 | p2@Il6 |
| 7.35e-53 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_a96318dfc385ed34dacd398c81617579 | p2@Il6 |
| 1.18e-44 | FFCP PHASE1:Mm9::chr8:11449034..11449045,+#_a43b82134e33031b0d8eb285bf6138bf | p@chr8:11449034..11449045, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr19:20567168..20567179,+#_a43b82134e33031b0d8eb285bf6138bf | p5@E030003E18Rik |
| 1.18e-44 | FFCP PHASE2:Mm9::chr8:11449034..11449045,+#_a43b82134e33031b0d8eb285bf6138bf | p@chr8:11449034..11449045, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr19:20567168..20567179,+#_a43b82134e33031b0d8eb285bf6138bf | p5@E030003E18Rik |
| 1.66e-44 | FFCP PHASE1:Mm9::chr11:61392754..61392766,-#_0831cb23e364f3c8dd169bffe8846de5 | p@chr11:61392754..61392766, - |
| 1.66e-44 | FFCP PHASE2:Mm9::chr11:61392754..61392766,-#_0831cb23e364f3c8dd169bffe8846de5 | p@chr11:61392754..61392766, - |
| 1.91e-44 | FFCP PHASE2:Hg19::chr14:61929802..61929817,+#_f15e41ca30fa09c0b95eed08436fe039 | p35@PRKCH |
| 1.91e-44 | FFCP PHASE1:Hg19::chrX:47895575..47895589,+#_f15e41ca30fa09c0b95eed08436fe039 | p@chrX:47895575..47895589, + |
| 1.91e-44 | FFCP PHASE1:Hg19::chr14:61929802..61929817,+#_f15e41ca30fa09c0b95eed08436fe039 | p35@PRKCH |
| 1.91e-44 | FFCP PHASE2:Hg19::chrX:47895575..47895589,+#_f15e41ca30fa09c0b95eed08436fe039 | p@chrX:47895575..47895589, + |
| 3.27e-44 | FFCP PHASE1:Mm9::chr3:103792260..103792309,+#_9971ce53a8a796413ab9f0382fb41918 | p@chr3:103792260..103792309, + |
| 3.27e-44 | FFCP PHASE2:Mm9::chr3:103792260..103792309,+#_9971ce53a8a796413ab9f0382fb41918 | p@chr3:103792260..103792309, + |
| 6.0e-44 | FFCP PHASE1:Hg19::chr7:30792938..30792970,+#_fe49d18d2392998e35c9d2dea58c42a0 | p@chr7:30792938..30792970, + |
| 6.0e-44 | FFCP PHASE2:Hg19::chr7:30792938..30792970,+#_fe49d18d2392998e35c9d2dea58c42a0 | p@chr7:30792938..30792970, + |
| 8.97e-44 | FFCP PHASE1:Mm9::chr5:93362343..93362363,+#_91426db8078d66a625986eceb21ecfde | p@chr5:93362343..93362363, + |
| 8.97e-44 | FFCP PHASE2:Mm9::chr5:93362343..93362363,+#_91426db8078d66a625986eceb21ecfde | p@chr5:93362343..93362363, + |
| 2.45e-43 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_ac58c1eb62412624d2e421937af861cb | p@chrX:160838683..160838694, + |
| 2.45e-43 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_ac58c1eb62412624d2e421937af861cb | p@chrX:160838683..160838694, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr8:125956526..125956533,-#_af9d3fee4dbc2185c8138aead29aaf8f | p@chr8:125956526..125956533, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr8:125956526..125956533,-#_af9d3fee4dbc2185c8138aead29aaf8f | p@chr8:125956526..125956533, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr8:125952865..125952872,-#_55f8b7ec36adbf43817e485357da837a | p@chr8:125952865..125952872, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr15:76984103..76984104,-#_55f8b7ec36adbf43817e485357da837a | p18@Rbfox2 |
| 2.66e-39 | FFCP PHASE2:Mm9::chr15:76984103..76984104,-#_55f8b7ec36adbf43817e485357da837a | p18@Rbfox2 |
| 2.66e-39 | FFCP PHASE2:Mm9::chr8:125952865..125952872,-#_55f8b7ec36adbf43817e485357da837a | p@chr8:125952865..125952872, - |
| 4.15e-39 | FFCP PHASE2:Mm9::chr7:117927007..117927010,+#_631164ea73856aa0a38dbe3ce1ffae6e | p@chr7:117927007..117927010, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr6:91202567..91202570,+#_631164ea73856aa0a38dbe3ce1ffae6e | p@chr6:91202567..91202570, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr7:117927007..117927010,+#_631164ea73856aa0a38dbe3ce1ffae6e | p@chr7:117927007..117927010, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr6:91202567..91202570,+#_631164ea73856aa0a38dbe3ce1ffae6e | p@chr6:91202567..91202570, + |
| 1.17e-38 | FFCP PHASE2:Mm9::chr6:91184012..91184021,+#_92137fd01550161b5f36ca542fd56728 | p@chr6:91184012..91184021, + |
| 1.17e-38 | FFCP PHASE1:Mm9::chr6:91184012..91184021,+#_92137fd01550161b5f36ca542fd56728 | p@chr6:91184012..91184021, + |
| 1.56e-38 | FFCP PHASE1:Mm9::chr16:58465599..58465600,+#_513b586d4f42ab0bf4d58561732ecdf7 | p@chr16:58465599..58465600, + |
| 1.56e-38 | FFCP PHASE2:Mm9::chr16:58465599..58465600,+#_513b586d4f42ab0bf4d58561732ecdf7 | p@chr16:58465599..58465600, + |
| 2.64e-38 | FFCP PHASE2:Hg19::chr2:72375244..72375254,-#_d2245bebaed88b7b9be1408d478c4d4e | p12@CYP26B1 |
| 2.64e-38 | FFCP PHASE1:Hg19::chr2:72375244..72375254,-#_d2245bebaed88b7b9be1408d478c4d4e | p12@CYP26B1 |
| 2.79e-38 | FFCP PHASE2:Mm9::chr4:141154145..141154160,-#_8222c1e640f093bf9faeac82c842b4a9 | p6@Fblim1 |
| 2.79e-38 | FFCP PHASE1:Mm9::chr4:141154145..141154160,-#_8222c1e640f093bf9faeac82c842b4a9 | p6@Fblim1 |
| 3.73e-38 | FFCP PHASE1:Mm9::chr3:54920096..54920117,+#_ca3d835d7842a7ac8a580a99b45ac523 | p7@Spg20 |
| 3.73e-38 | FFCP PHASE2:Mm9::chr3:54920096..54920117,+#_ca3d835d7842a7ac8a580a99b45ac523 | p7@Spg20 |
| 6.64e-38 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_d477f5b3308cd44847c1c0285be49334 | p@chr12:105433069..105433075, - |
| 6.64e-38 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_d477f5b3308cd44847c1c0285be49334 | p@chr12:105433069..105433075, - |
| 8.86e-38 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_929d1d9dad048d3af00d97f12ac33cfb | p@chrX:65748600..65748616, + |
| 8.86e-38 | FFCP PHASE2:Mm9::chr18:61220910..61220912,+#_929d1d9dad048d3af00d97f12ac33cfb | p@chr18:61220910..61220912, + |
| 8.86e-38 | FFCP PHASE1:Mm9::chr18:61220910..61220912,+#_929d1d9dad048d3af00d97f12ac33cfb | p@chr18:61220910..61220912, + |
| 8.86e-38 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_929d1d9dad048d3af00d97f12ac33cfb | p@chrX:65748600..65748616, + |
| 3.67e-34 | FFCP PHASE1:Mm9::chr7:19425360..19425369,+#_b6d0f67823ada19cf878e1db264ce906 | p2@Mill2 |
| 3.67e-34 | FFCP PHASE2:Mm9::chr7:19425360..19425369,+#_b6d0f67823ada19cf878e1db264ce906 | p2@Mill2 |
| 3.67e-34 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_b6d0f67823ada19cf878e1db264ce906 | p@chr6:91222095..91222107, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_b6d0f67823ada19cf878e1db264ce906 | p@chr6:91222095..91222107, + |
| 3.67e-34 | FFCP PHASE1:Mm9::chr6:91183490..91183501,+#_b6d0f67823ada19cf878e1db264ce906 | p@chr6:91183490..91183501, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr6:91183490..91183501,+#_b6d0f67823ada19cf878e1db264ce906 | p@chr6:91183490..91183501, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr13:26584630..26584631,+#_65586287e4bbd8044f11de705b0cf304 | p@chr13:26584630..26584631, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:43726947..43726954,-#_65586287e4bbd8044f11de705b0cf304 | p@chr20:43726947..43726954, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr13:26584630..26584631,+#_65586287e4bbd8044f11de705b0cf304 | p@chr13:26584630..26584631, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:41261566..41261575,-#_65586287e4bbd8044f11de705b0cf304 | p10@C6 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:41261566..41261575,-#_65586287e4bbd8044f11de705b0cf304 | p10@C6 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:43726947..43726954,-#_65586287e4bbd8044f11de705b0cf304 | p@chr20:43726947..43726954, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr2:138989393..138989399,+#_fc33d24f794f59f1eaf280a9a559c101 | p@chr2:138989393..138989399, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr12:113448406..113448411,+#_fc33d24f794f59f1eaf280a9a559c101 | p14@OAS2 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr16:89584495..89584539,+#_fc33d24f794f59f1eaf280a9a559c101 | p@chr16:89584495..89584539, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr12:114798729..114798733,-#_fc33d24f794f59f1eaf280a9a559c101 | p@chr12:114798729..114798733, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr2:42252409..42252416,-#_fc33d24f794f59f1eaf280a9a559c101 | p2@ENST00000451514 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:19522637..19522659,-#_fc33d24f794f59f1eaf280a9a559c101 | p@chr1:19522637..19522659, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr12:113448406..113448411,+#_fc33d24f794f59f1eaf280a9a559c101 | p14@OAS2 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr21:46897193..46897196,+#_fc33d24f794f59f1eaf280a9a559c101 | p@chr21:46897193..46897196, + |
