Personal tools

UBERON:0003128: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0003128 |name=cranium |namespace= |def="Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anat...")
 
No edit summary
Line 21: Line 21:
|part_of=UBERON:0003129
|part_of=UBERON:0003129
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:18, 15 June 2012

Name:cranium
Definition:"Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)]
Xrefs:
links:

BILA:0000115
BTO:0001328
EFO:0000831
EHDAA:6029
EHDAA2:0000325
EMAPA:17680
FMA:71325
MA:0000316
MAT:0000340
MIAA:0000340
OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA
SCTID:181889008
TAO:0000737
VHOG:0000334
XAO:0003075

ZFA:0000737
Synonyms: "bones of cranium" EXACT [FMA:71325]
"calvarium" RELATED [BTO:0001328]
"cranial skeleton" RELATED []
"epicranial plate" RELATED []
"ossa cranii" EXACT [FMA:71325, FMA:TA]
"skeletal system of head" RELATED []
Comments:The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP].
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004765(skeletal element)
part_of:UBERON:0003129(skull)



Children

part of:UBERON:0001703 (neurocranium),UBERON:0004339 (calvarium),UBERON:0004766 (cranial bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003128 (cranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_c07e35bfbcad3a9ca1580153639f40d6p4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_c07e35bfbcad3a9ca1580153639f40d6p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_c07e35bfbcad3a9ca1580153639f40d6p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_c07e35bfbcad3a9ca1580153639f40d6p13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_c07e35bfbcad3a9ca1580153639f40d6p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_c07e35bfbcad3a9ca1580153639f40d6p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_c07e35bfbcad3a9ca1580153639f40d6p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_c07e35bfbcad3a9ca1580153639f40d6p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_c07e35bfbcad3a9ca1580153639f40d6p3@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_c07e35bfbcad3a9ca1580153639f40d6p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_c07e35bfbcad3a9ca1580153639f40d6p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_c07e35bfbcad3a9ca1580153639f40d6p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_c07e35bfbcad3a9ca1580153639f40d6p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_c07e35bfbcad3a9ca1580153639f40d6p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_c07e35bfbcad3a9ca1580153639f40d6p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_c07e35bfbcad3a9ca1580153639f40d6p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_c07e35bfbcad3a9ca1580153639f40d6p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_c07e35bfbcad3a9ca1580153639f40d6p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_c07e35bfbcad3a9ca1580153639f40d6p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_c07e35bfbcad3a9ca1580153639f40d6p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Strc

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003128&oldid=1832938"