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|name=subdivision of skeletal system
|name=subdivision of skeletal system
|namespace=
|namespace=
|def=
|def="Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [UBERON:cjm, UBERONREF:0000003]
|xref=FMA:23879;;FMA:85544;;galen:ComplexSkeletalStructure;;ncithesaurus:Skeletal_System_Part;;SCTID:118966000
|xref=FMA:85544;;galen:ComplexSkeletalStructure;;ncithesaurus:Skeletal_System_Part;;SCTID:118966000
|is_a=UBERON:0000480;;UBERON:0004120
|is_a=UBERON:0011216
|synonym="skeletal system part" RELATED [];;"skeletal system subdivision" EXACT [FMA:85544];;"skeleton part" RELATED [];;"subdivision of skeleton" RELATED [];;"subdivision of skeleton (in vivo)" EXACT [FMA:23879]
|synonym="skeletal system part" RELATED [];;"skeletal system subdivision" EXACT [FMA:85544]
|comment=note we consciously merge the two FMA classes below
|comment=
|alt_id=
|alt_id=UBERON:0010322
|disjoint_from=
|disjoint_from=
|union_of=
|union_of=
|created_by=cjm
|created_by=
|obo_creation_date=2009-07-30T03:53:53Z
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001434
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 16:56, 26 June 2012

Name:subdivision of skeletal system
Definition:"Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [UBERON:cjm, UBERONREF:0000003]
Xrefs:
links:

FMA:85544
galen:ComplexSkeletalStructure
ncithesaurus:Skeletal_System_Part

SCTID:118966000
Synonyms: "skeletal system part" RELATED []
"skeletal system subdivision" EXACT [FMA:85544]
Alt_id: UBERON:0010322

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011216(organ system subdivision)



Children

is a:UBERON:0001130 (vertebral column),UBERON:0002517 (basicranium),UBERON:0003128 (cranium),UBERON:0003129 (skull),UBERON:0004761 (cartilaginous neurocranium),UBERON:0010323 (cranial skeletal system),UBERON:0011137 (axial skeletal system),UBERON:0011138 (post-cranial axial skeletal system),UBERON:0011158 (primary subdivision of skull),UBERON:0011159 (primary subdivision of cranial skeletal system),UBERON:0011249 (appendicular skeletal system)
part of:UBERON:0010912 (subdivision of skeleton)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000075 (subdivision of skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.88e-51FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_401b79322dc7bcdcd2810a036c808ab0p@chr3:174737010..174737023, +
1.88e-51FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_401b79322dc7bcdcd2810a036c808ab0p@chr3:174737010..174737023, +
2.62e-44FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_ed8758bb90017b2982c753d61f9e8f2fp4@PAX1
2.62e-44FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_ed8758bb90017b2982c753d61f9e8f2fp4@PAX1
5.38e-44FFCP PHASE1:Mm9::chr1:24217213..24217226,+#_0f65b1f68670eeb5c25b2468bf65455bp@chr1:24217213..24217226, +
5.38e-44FFCP PHASE2:Mm9::chr1:24217213..24217226,+#_0f65b1f68670eeb5c25b2468bf65455bp@chr1:24217213..24217226, +
7.83e-38FFCP PHASE2:Hg19::chr22:23586671..23586679,+#_33653884859d73f39ced41f212773751p@chr22:23586671..23586679, +
7.83e-38FFCP PHASE1:Hg19::chr22:23586671..23586679,+#_33653884859d73f39ced41f212773751p@chr22:23586671..23586679, +
1.02e-36FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_e9bb9f13cb1fa959c779a9f9fda8834ap1@ENST00000555639
1.02e-36FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_e9bb9f13cb1fa959c779a9f9fda8834ap1@ENST00000555639
2.1e-35FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_23cf261d0084387ceee5652d74071970p2@PAX9
2.1e-35FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_23cf261d0084387ceee5652d74071970p2@PAX9
7.98e-34FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_dc85b6c70736ef20beae6110a125d92ep1@ENST00000427892, p1@uc001dgp.1
7.98e-34FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_dc85b6c70736ef20beae6110a125d92ep1@ENST00000427892, p1@uc001dgp.1
9.47e-34FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_e73158edb69a26ad4316a33dfac0b5d7p4@PAX9
9.47e-34FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_e73158edb69a26ad4316a33dfac0b5d7p4@PAX9
2.03e-33FFCP PHASE2:Mm9::chr15:78817557..78817567,+#_6fe1bcab5e5433691b23bde493b2a144p@chr15:78817557..78817567, +
2.03e-33FFCP PHASE1:Mm9::chr15:78817557..78817567,+#_6fe1bcab5e5433691b23bde493b2a144p@chr15:78817557..78817567, +
3.37e-33FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_3e262b263f50c19622b7fb283f21bf2ep26@Myo18a
3.37e-33FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_3e262b263f50c19622b7fb283f21bf2ep26@Myo18a
4.33e-33FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_f821cb26cc14b5999a63031ca07e39fcp@chr8:75097542..75097549, +
4.33e-33FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_f821cb26cc14b5999a63031ca07e39fcp@chr9:21934585..21934591, -
4.33e-33FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_f821cb26cc14b5999a63031ca07e39fcp@chr9:21934585..21934591, -
4.33e-33FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_f821cb26cc14b5999a63031ca07e39fcp@chr8:75097542..75097549, +
4.33e-33FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_f821cb26cc14b5999a63031ca07e39fcp@chr2:32482372..32482381, +
4.33e-33FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_f821cb26cc14b5999a63031ca07e39fcp@chr2:32482372..32482381, +
1.06e-32FFCP PHASE2:Hg19::chr14:37126852..37126863,+#_9613815bb4d008d44a393c3d57009a23p2@ENST00000555639
1.06e-32FFCP PHASE1:Hg19::chr14:37126852..37126863,+#_9613815bb4d008d44a393c3d57009a23p2@ENST00000555639
9.32e-32FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_174a3be3cca12d03010c7a2cbf115487p@chr1:75599683..75599699, -
9.32e-32FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_174a3be3cca12d03010c7a2cbf115487p@chr1:75599683..75599699, -
2.86e-31FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_c099c8202dff6b937d8165259cda9e12p@chr5:30104176..30104187, -
2.86e-31FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_c099c8202dff6b937d8165259cda9e12p@chr5:30104176..30104187, -
3.24e-31FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_6b8060986f2ce66781d7ef68a5a574f9p@chr1:75599672..75599682, -
3.24e-31FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_6b8060986f2ce66781d7ef68a5a574f9p@chr1:75599672..75599682, -
6.66e-30FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr11:8405038..8405048, -
6.66e-30FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chrX:154140800..154140810, +
6.66e-30FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr2:75320183..75320189, +
6.66e-30FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr16:93971325..93971337, -
6.66e-30FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr13:78257491..78257498, +
6.66e-30FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr1:172843813..172843834, -
6.66e-30FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_882a5095cc6c4cbecd9521b3bd0ca10bp4@Kncn
6.66e-30FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr13:58283583..58283607, -
6.66e-30FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr4:63079735..63079745, -
6.66e-30FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr13:78257491..78257498, +
6.66e-30FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_882a5095cc6c4cbecd9521b3bd0ca10bp1@Otog
6.66e-30FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_882a5095cc6c4cbecd9521b3bd0ca10bp21@Espn
6.66e-30FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr14:102297747..102297765, +
6.66e-30FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr11:94371127..94371139, -
6.66e-30FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr17:13983179..13983190, +
6.66e-30FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr15:89215333..89215341, +
6.66e-30FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr3:154459246..154459253, +
6.66e-30FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_882a5095cc6c4cbecd9521b3bd0ca10bp1@Strc
6.66e-30FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr1:194818647..194818660, -
6.66e-30FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr14:47293487..47293493, -
6.66e-30FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr15:89215306..89215315, +
6.66e-30FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr9:42206745..42206774, -
6.66e-30FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr5:150945209..150945220, +
6.66e-30FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr1:93235253..93235264, +
6.66e-30FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_882a5095cc6c4cbecd9521b3bd0ca10bp1@Otol1
6.66e-30FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_882a5095cc6c4cbecd9521b3bd0ca10bp4@Tecta
6.66e-30FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr11:8405038..8405048, -
6.66e-30FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr6:86745686..86745727, -
6.66e-30FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr8:94180607..94180619, -
6.66e-30FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr12:109905468..109905474, +
6.66e-30FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chrX:154140800..154140810, +
6.66e-30FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr9:42207697..42207705, -
6.66e-30FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr8:13414266..13414279, +
6.66e-30FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr1:94627290..94627299, -
6.66e-30FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr12:13572961..13572974, +
6.66e-30FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr17:13983179..13983190, +
6.66e-30FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr17:27252925..27252939, +
6.66e-30FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr14:47293496..47293510, -
6.66e-30FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr3:154459231..154459240, +
6.66e-30FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_882a5095cc6c4cbecd9521b3bd0ca10bp2@uc007rhb.1
6.66e-30FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_882a5095cc6c4cbecd9521b3bd0ca10bp5@Fer1l6
6.66e-30FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_882a5095cc6c4cbecd9521b3bd0ca10bp3@Kncn
6.66e-30FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_882a5095cc6c4cbecd9521b3bd0ca10bp1@Gm1322
6.66e-30FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr18:38104702..38104718, -
6.66e-30FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_882a5095cc6c4cbecd9521b3bd0ca10bp6@Fam70b
6.66e-30FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr7:141605556..141605563, -
6.66e-30FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr1:182528388..182528403, +
6.66e-30FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr12:109905468..109905474, +
6.66e-30FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr4:154208086..154208123, +
6.66e-30FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr14:20649897..20649907, +
6.66e-30FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr2:170417150..170417155, -
6.66e-30FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_882a5095cc6c4cbecd9521b3bd0ca10bp2@Tmprss3
6.66e-30FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr15:97806034..97806061, +
6.66e-30FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr11:4689837..4689845, -
6.66e-30FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr15:103146966..103146971, -
6.66e-30FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr3:35012425..35012439, +
6.66e-30FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr12:77084875..77084885, +
6.66e-30FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr2:128881546..128881553, -
6.66e-30FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_882a5095cc6c4cbecd9521b3bd0ca10bp3@Ptprq
6.66e-30FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_882a5095cc6c4cbecd9521b3bd0ca10bp1@Grxcr1
6.66e-30FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr1:172843885..172843890, -
6.66e-30FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr19:10536767..10536777, -
6.66e-30FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_882a5095cc6c4cbecd9521b3bd0ca10bp6@Tecta
6.66e-30FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr6:113251606..113251613, +
6.66e-30FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr14:20649897..20649907, +
6.66e-30FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_882a5095cc6c4cbecd9521b3bd0ca10bp2@Gpr152

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