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MCL coexpression mm9:1353: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000221!6.54e-10!44;CL:0000133!6.54e-10!44;CL:0000540!6.58e-10!33;CL:0000047!6.58e-10!33;CL:0000031!6.58e-10!33;CL:0000404!6.58e-10!33;CL:0002319!2.50e-09!43;CL:0000107!1.69e-07!9
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004121!1.71e-12!95;UBERON:0000924!1.71e-12!95;UBERON:0006601!1.71e-12!95;UBERON:0001016!4.96e-12!75;UBERON:0000468!1.91e-11!333;UBERON:0001017!4.31e-11!73;UBERON:0010314!9.67e-09!92;UBERON:0000010!1.49e-08!11;UBERON:0002410!1.69e-07!9;UBERON:0000922!2.01e-07!320;UBERON:0010371!3.74e-07!73;UBERON:0002048!5.75e-07!14;UBERON:0000117!5.75e-07!14;UBERON:0000171!5.75e-07!14;UBERON:0000170!5.75e-07!14;UBERON:0005597!5.75e-07!14;UBERON:0000118!5.75e-07!14;UBERON:0000479!8.82e-07!349
}}
}}

Revision as of 16:45, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:104215084..104215089,-p@chr14:104215084..104215089
-
Mm9::chr14:104242757..104242768,-p5@Ednrb
Mm9::chr14:104242811..104242818,-p9@Ednrb
Mm9::chr14:104242902..104242920,-p1@Ednrb
Mm9::chr14:104242927..104242932,-p10@Ednrb
Mm9::chr14:104243561..104243576,-p7@Ednrb


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
ectodermal cell6.54e-1044
neurectodermal cell6.54e-1044
neuron6.58e-1033
neuronal stem cell6.58e-1033
neuroblast6.58e-1033
electrically signaling cell6.58e-1033
neural cell2.50e-0943
autonomic neuron1.69e-079

Uber Anatomy
Ontology termp-valuen
ectoderm-derived structure1.71e-1295
ectoderm1.71e-1295
presumptive ectoderm1.71e-1295
nervous system4.96e-1275
multi-cellular organism1.91e-11333
central nervous system4.31e-1173
structure with developmental contribution from neural crest9.67e-0992
peripheral nervous system1.49e-0811
autonomic nervous system1.69e-079
embryo2.01e-07320
ecto-epithelium3.74e-0773
lung5.75e-0714
respiratory tube5.75e-0714
respiration organ5.75e-0714
pair of lungs5.75e-0714
lung primordium5.75e-0714
lung bud5.75e-0714
tissue8.82e-07349


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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