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MCL coexpression mm9:1912: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005172!2.31e-17!49;UBERON:0005173!2.31e-17!49;UBERON:0002417!2.31e-17!49;UBERON:0000916!2.31e-17!49;UBERON:0002107!1.24e-13!22;UBERON:0007499!1.24e-13!22;UBERON:0006925!1.24e-13!22;UBERON:0009497!1.24e-13!22;UBERON:0000015!1.24e-13!22;UBERON:0002423!1.24e-13!22;UBERON:0006235!1.24e-13!22;UBERON:0008835!1.24e-13!22;UBERON:0003894!1.24e-13!22;UBERON:0004161!1.24e-13!22;UBERON:0008836!1.24e-13!22;UBERON:0002113!1.72e-13!14;UBERON:0003918!1.72e-13!14;UBERON:0011143!1.72e-13!14;UBERON:0005095!1.72e-13!14;UBERON:0007687!1.72e-13!14;UBERON:0009854!8.78e-13!23;UBERON:0009856!8.78e-13!23;UBERON:0003104!7.15e-12!61;UBERON:0009142!7.15e-12!61;UBERON:0005177!7.77e-12!79;UBERON:0002365!2.71e-11!25;UBERON:0002330!2.71e-11!25;UBERON:0009569!3.24e-10!66;UBERON:0006554!1.53e-09!18;UBERON:0002100!5.45e-09!90;UBERON:0001008!8.00e-09!19;UBERON:0000489!1.33e-07!21
}}
}}

Revision as of 17:38, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:79277331..79277368,+p@chr10:79277331..79277368
+
Mm9::chr11:83698996..83699006,+p@chr11:83698996..83699006
+
Mm9::chr2:59436619..59436655,+p@chr2:59436619..59436655
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Mm9::chr6:34129226..34129246,+p2@ENSMUST00000145644


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
abdomen element2.31e-1749
abdominal segment element2.31e-1749
abdominal segment of trunk2.31e-1749
abdomen2.31e-1749
liver1.24e-1322
epithelial sac1.24e-1322
digestive gland1.24e-1322
epithelium of foregut-midgut junction1.24e-1322
anatomical boundary1.24e-1322
hepatobiliary system1.24e-1322
foregut-midgut junction1.24e-1322
hepatic diverticulum1.24e-1322
liver primordium1.24e-1322
septum transversum1.24e-1322
liver bud1.24e-1322
kidney1.72e-1314
kidney mesenchyme1.72e-1314
upper urinary tract1.72e-1314
kidney rudiment1.72e-1314
kidney field1.72e-1314
digestive tract diverticulum8.78e-1323
sac8.78e-1323
mesenchyme7.15e-1261
entire embryonic mesenchyme7.15e-1261
trunk region element7.77e-1279
exocrine gland2.71e-1125
exocrine system2.71e-1125
subdivision of trunk3.24e-1066
urinary system structure1.53e-0918
trunk5.45e-0990
renal system8.00e-0919
cavitated compound organ1.33e-0721


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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