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MCL coexpression mm9:3415: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005409!1.05e-13!47;UBERON:0000160!1.63e-13!31;UBERON:0002107!3.68e-13!22;UBERON:0007499!3.68e-13!22;UBERON:0006925!3.68e-13!22;UBERON:0009497!3.68e-13!22;UBERON:0000015!3.68e-13!22;UBERON:0002423!3.68e-13!22;UBERON:0006235!3.68e-13!22;UBERON:0008835!3.68e-13!22;UBERON:0003894!3.68e-13!22;UBERON:0004161!3.68e-13!22;UBERON:0008836!3.68e-13!22;UBERON:0009854!1.33e-12!23;UBERON:0009856!1.33e-12!23;UBERON:0002365!1.24e-11!25;UBERON:0002330!1.24e-11!25;UBERON:0001007!2.30e-11!116;UBERON:0001555!2.30e-11!116;UBERON:0007026!2.30e-11!116;UBERON:0004119!1.57e-10!118;UBERON:0000925!1.57e-10!118;UBERON:0006595!1.57e-10!118;UBERON:0004921!2.24e-10!114;UBERON:0000344!3.03e-08!15;UBERON:0001242!6.53e-07!13;UBERON:0000060!6.53e-07!13;UBERON:0001262!6.53e-07!13;UBERON:0004786!6.53e-07!13
}}
}}

Revision as of 20:01, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:73512249..73512260,-p4@Bche
Mm9::chr3:73512290..73512306,-p3@Bche
Mm9::chr3:73512321..73512345,-p2@Bche


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
gastrointestinal system1.05e-1347
intestine1.63e-1331
liver3.68e-1322
epithelial sac3.68e-1322
digestive gland3.68e-1322
epithelium of foregut-midgut junction3.68e-1322
anatomical boundary3.68e-1322
hepatobiliary system3.68e-1322
foregut-midgut junction3.68e-1322
hepatic diverticulum3.68e-1322
liver primordium3.68e-1322
septum transversum3.68e-1322
liver bud3.68e-1322
digestive tract diverticulum1.33e-1223
sac1.33e-1223
exocrine gland1.24e-1125
exocrine system1.24e-1125
digestive system2.30e-11116
digestive tract2.30e-11116
primitive gut2.30e-11116
endoderm-derived structure1.57e-10118
endoderm1.57e-10118
presumptive endoderm1.57e-10118
subdivision of digestive tract2.24e-10114
mucosa3.03e-0815
intestinal mucosa6.53e-0713
anatomical wall6.53e-0713
wall of intestine6.53e-0713
gastrointestinal system mucosa6.53e-0713


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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