Personal tools

MCL coexpression mm9:577: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=-0.0470760413922742,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.096497738357694,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.0986886653414259,-0.106932678779961,0.105156319613629,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.096497738357694,-0.0986886653414259,-0.0769870445726752,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,0.00131580184235876,0.000217224276766473,0.031466666501631,-0.0986886653414259,-0.096497738357694,-0.030246287145255,-0.041718751492076,-0.0825936408109878,-0.0769870445726752,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.0272937380442157,0.0129233406396123,0.0793216825411558,-0.0186698722869347,-0.0630776784349065,-0.0769870445726752,-0.096497738357694,-0.0986886653414259,-0.0501827898833331,-0.0501827898833331,-0.0769870445726752,-0.0769870445726752,-0.0501827898833331,-0.106932678779961,-0.106932678779961,-0.106932678779961,0,-0.041718751492076,-0.046314948474361,-0.0501827898833331,-0.0986886653414259,0.105980870522129,0.0565708931571388,0.0723781649449073,-0.0501827898833331,-0.0501827898833331,-0.0501827898833331,0.00824401343853495,-0.041718751492076,0.0115705178068462,0.104696441345764,0.0123186439608193,0,-0.041718751492076,-0.0176869193183805,0.179411590134022,-0.041718751492076,-0.0986886653414259,-0.0986886653414259,-0.096497738357694,-0.0986886653414259,0,0,-0.0501827898833331,0,-0.041718751492076,0.251019079409357,-0.0769870445726752,-0.0986886653414259,-0.0769870445726752,-0.0986886653414259,-0.096497738357694,-0.0495408676660636,0.0582855509312915,0.0935790869763251,0,-0.041718751492076,-0.0168102988824831,0.00708367646790414,0.104337317303146,0.0471901713886056,-0.00275431547751202,0.226876160146233,-0.096497738357694,0.282338033079318,0.22076806852419,0.192570495766647,-0.0986886653414259,0.118841597404538,0.0568119610194933,-0.0449833373358705,-0.106932678779961,-0.106932678779961,-0.106932678779961,0.144089522326997,0.121889991562131,0.110984668902147,0.129576677486723,0.129205511106288,0.075847431089108,0.0952432460963855,0.0506804718542587,0.120998890390592,-0.041718751492076,0.0412251812578877,-0.0251068336911447,-0.0371086030854069,0.003121483718381,0.0580376373562187,0.0922316813795348,0.0727497490639119,0.0880090321387007,0.207751135426777,-0.0769870445726752,0.0441390865224291,0.0356993300986841,0.0509444185949351,0.231848421204393,0.201663356206093,0.188757928037435,-0.041718751492076,-0.0986886653414259,-0.106932678779961,-0.106932678779961,0.107162536117397,0.0823011207644759,0.0982130829271171,0.168347036942697,0.166914299573514,0.241049102331113,0.25849684794696,0.274900160576266,0.261654038391755,0.303796659645316,0.524850811184839,0.467832161198119,0.531114226145215,0.450093428789677,0.426940842428975,-0.0136083118622616,-0.041718751492076,-0.0986886653414259,-0.0986886653414259,-0.0147246734237327,0.0669928057391553,0.00246016515466656,0.105452523680385,0.0828074885325161,0,-0.041718751492076,-0.041718751492076,0.0890978196294613,0.0878035356888689,0.14345227320223,0,-0.041718751492076,-0.0443495273501618,-0.0501827898833331,0.138395398775231,0.172850121936275,0.130096090519514,0.152250519547921,0.195805894613467,0.256840274687205,0.109032507538388,0.188025910223796,0.0456120279500319,-0.0735131735733049,-0.096497738357694,-0.0769990465872214,-0.096497738357694,-0.096497738357694,-0.0986886653414259,-0.0986886653414259,-0.00546965364416763,-0.0178623410670039,0.006672100918254,0.0104578205081042,0.0604116802460467,0.0762275538150001,0,0,-0.041718751492076,0.549609431357216,0.0336425592493029,0.19493955919107,0.298371358428233,0.459018650632245,0.516176501008284,0.624338702376929,0.63107520369477,0.667900975538786,0.67493797278159,0.778547043983609,0.675523044887221,0.648689788637536,0.626319266163809,-0.106932678779961,-0.106932678779961,-0.041718751492076,0.0323941346999246,0.0646640766951323,0.0481354699899057,-0.0769870445726752,0.267686210212765,0.113769672926484,0.0661648162291257,0.267278167942273,0.127937345404199,0.172116355856417,0.198736897728007,0.0974350170931667,0.111348509539896,0.18468984267415,0.397804453836623,0.103881990253488,-0.0192984123442141,0.110958478856418,0.0577020065333513,0.26273035298664,-0.0313606173697032,-0.041718751492076,-0.0769870445726752,0.0520255708266411,0.10120496736562,0.207549302614285,0.134665885471472,0.13725829529691,0.186128512016572,0,-0.041718751492076,0.020314572602169,0.0418731833633424,-0.0769870445726752,0,0.0709019855629759,0.0712812415377886,0.0571074924655516,0,-0.0442296732749286,0.0764205018923472,-0.106932678779961,0.0727660784663336,0.196920433218342,0.126846093406508,0.0159947605799825,-0.0109814970092349,0.0445372373235683,0.124515716591453,-0.0301796599776858,0,-0.0331430413200936,-0.0769870445726752,-0.0499722542825735,-0.0174591903992902,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.096497738357694,-0.0349171052701354,0.0711955894755105,0.0347545999863597,0.135622413684553,0.0263502339505021,0.061992182203707,0.0962007932069227,0.0558227404121753,-0.00682763539667877,-0.041718751492076,-0.106932678779961,0,-0.0107076209244943,0,-0.00671893108291044,-0.00918883350906696,0.0540126832827877,0.0895203268037201,0.0118536921232854,-0.096497738357694,-0.0450071819375573,-0.0869228512987563,-0.041718751492076,-0.0501827898833331,-0.096497738357694,-0.0501827898833331,-0.0769870445726752,-0.0501827898833331,-0.096497738357694,-0.0352129597738495,-0.0986886653414259,-0.0731313637506647,-0.103307634567822,-0.096497738357694,-0.0986886653414259,0.1515302384073,-0.106932678779961,-0.0986886653414259,-0.106932678779961,0.099849876602563,0.0614309082356787,0.0730404042754446,-0.0769870445726752,-0.0501827898833331,0.0957568062997592,0.0679518521460125,0.100202135286645,0.032032270523165,-0.049081944896907,0.0793360987888125,0,0.0126530254083714,0.0553754987702068,0.230343842949769,-0.106932678779961,0.0956426460415075,0.0253400446013807,0.126993683768134,-0.041718751492076,-0.0816388654494388,0.217603618249765,0.194579489432393,0.213237495327594,0.199844661440471,0.178101321237085,0.211515193831808,0.204319690114543,0.18016598899308,0.179272735134727,0.25965991455477,0.216245327708713,0.206655961337231,0.14986111676545,0.230592943322252,0.226790206858766,0.179361387272768,0.169342968499384,0.228077925707425,0.189357858012825,0.182792780537145,0.179113861568644,0.177842704895971,0.209154227766025,0.193442483447008,0.263979475727258,0.211236331559735,0.161015585407983,0.188974289144444,0.149683488753124,0.165909955572116,0.219373501900405,0.218194473737678,0.225047003193659,0.226332673969476,0.223684013367279
|coexpression_dpi_cluster_scores_median=-0.0470760413922742,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.096497738357694,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.0986886653414259,-0.106932678779961,0.105156319613629,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.096497738357694,-0.0986886653414259,-0.0769870445726752,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.106932678779961,0.00131580184235876,0.000217224276766473,0.031466666501631,-0.0986886653414259,-0.096497738357694,-0.030246287145255,-0.041718751492076,-0.0825936408109878,-0.0769870445726752,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.0272937380442157,0.0129233406396123,0.0793216825411558,-0.0186698722869347,-0.0630776784349065,-0.0769870445726752,-0.096497738357694,-0.0986886653414259,-0.0501827898833331,-0.0501827898833331,-0.0769870445726752,-0.0769870445726752,-0.0501827898833331,-0.106932678779961,-0.106932678779961,-0.106932678779961,0,-0.041718751492076,-0.046314948474361,-0.0501827898833331,-0.0986886653414259,0.105980870522129,0.0565708931571388,0.0723781649449073,-0.0501827898833331,-0.0501827898833331,-0.0501827898833331,0.00824401343853495,-0.041718751492076,0.0115705178068462,0.104696441345764,0.0123186439608193,0,-0.041718751492076,-0.0176869193183805,0.179411590134022,-0.041718751492076,-0.0986886653414259,-0.0986886653414259,-0.096497738357694,-0.0986886653414259,0,0,-0.0501827898833331,0,-0.041718751492076,0.251019079409357,-0.0769870445726752,-0.0986886653414259,-0.0769870445726752,-0.0986886653414259,-0.096497738357694,-0.0495408676660636,0.0582855509312915,0.0935790869763251,0,-0.041718751492076,-0.0168102988824831,0.00708367646790414,0.104337317303146,0.0471901713886056,-0.00275431547751202,0.226876160146233,-0.096497738357694,0.282338033079318,0.22076806852419,0.192570495766647,-0.0986886653414259,0.118841597404538,0.0568119610194933,-0.0449833373358705,-0.106932678779961,-0.106932678779961,-0.106932678779961,0.144089522326997,0.121889991562131,0.110984668902147,0.129576677486723,0.129205511106288,0.075847431089108,0.0952432460963855,0.0506804718542587,0.120998890390592,-0.041718751492076,0.0412251812578877,-0.0251068336911447,-0.0371086030854069,0.003121483718381,0.0580376373562187,0.0922316813795348,0.0727497490639119,0.0880090321387007,0.207751135426777,-0.0769870445726752,0.0441390865224291,0.0356993300986841,0.0509444185949351,0.231848421204393,0.201663356206093,0.188757928037435,-0.041718751492076,-0.0986886653414259,-0.106932678779961,-0.106932678779961,0.107162536117397,0.0823011207644759,0.0982130829271171,0.168347036942697,0.166914299573514,0.241049102331113,0.25849684794696,0.274900160576266,0.261654038391755,0.303796659645316,0.524850811184839,0.467832161198119,0.531114226145215,0.450093428789677,0.426940842428975,-0.0136083118622616,-0.041718751492076,-0.0986886653414259,-0.0986886653414259,-0.0147246734237327,0.0669928057391553,0.00246016515466656,0.105452523680385,0.0828074885325161,0,-0.041718751492076,-0.041718751492076,0.0890978196294613,0.0878035356888689,0.14345227320223,0,-0.041718751492076,-0.0443495273501618,-0.0501827898833331,0.138395398775231,0.172850121936275,0.130096090519514,0.152250519547921,0.195805894613467,0.256840274687205,0.109032507538388,0.188025910223796,0.0456120279500319,-0.0735131735733049,-0.096497738357694,-0.0769990465872214,-0.096497738357694,-0.096497738357694,-0.0986886653414259,-0.0986886653414259,-0.00546965364416763,-0.0178623410670039,0.006672100918254,0.0104578205081042,0.0604116802460467,0.0762275538150001,0,0,-0.041718751492076,0.549609431357216,0.0336425592493029,0.19493955919107,0.298371358428233,0.459018650632245,0.516176501008284,0.624338702376929,0.63107520369477,0.667900975538786,0.67493797278159,0.778547043983609,0.675523044887221,0.648689788637536,0.626319266163809,-0.106932678779961,-0.106932678779961,-0.041718751492076,0.0323941346999246,0.0646640766951323,0.0481354699899057,-0.0769870445726752,0.267686210212765,0.113769672926484,0.0661648162291257,0.267278167942273,0.127937345404199,0.172116355856417,0.198736897728007,0.0974350170931667,0.111348509539896,0.18468984267415,0.397804453836623,0.103881990253488,-0.0192984123442141,0.110958478856418,0.0577020065333513,0.26273035298664,-0.0313606173697032,-0.041718751492076,-0.0769870445726752,0.0520255708266411,0.10120496736562,0.207549302614285,0.134665885471472,0.13725829529691,0.186128512016572,0,-0.041718751492076,0.020314572602169,0.0418731833633424,-0.0769870445726752,0,0.0709019855629759,0.0712812415377886,0.0571074924655516,0,-0.0442296732749286,0.0764205018923472,-0.106932678779961,0.0727660784663336,0.196920433218342,0.126846093406508,0.0159947605799825,-0.0109814970092349,0.0445372373235683,0.124515716591453,-0.0301796599776858,0,-0.0331430413200936,-0.0769870445726752,-0.0499722542825735,-0.0174591903992902,-0.106932678779961,-0.106932678779961,-0.106932678779961,-0.096497738357694,-0.0349171052701354,0.0711955894755105,0.0347545999863597,0.135622413684553,0.0263502339505021,0.061992182203707,0.0962007932069227,0.0558227404121753,-0.00682763539667877,-0.041718751492076,-0.106932678779961,0,-0.0107076209244943,0,-0.00671893108291044,-0.00918883350906696,0.0540126832827877,0.0895203268037201,0.0118536921232854,-0.096497738357694,-0.0450071819375573,-0.0869228512987563,-0.041718751492076,-0.0501827898833331,-0.096497738357694,-0.0501827898833331,-0.0769870445726752,-0.0501827898833331,-0.096497738357694,-0.0352129597738495,-0.0986886653414259,-0.0731313637506647,-0.103307634567822,-0.096497738357694,-0.0986886653414259,0.1515302384073,-0.106932678779961,-0.0986886653414259,-0.106932678779961,0.099849876602563,0.0614309082356787,0.0730404042754446,-0.0769870445726752,-0.0501827898833331,0.0957568062997592,0.0679518521460125,0.100202135286645,0.032032270523165,-0.049081944896907,0.0793360987888125,0,0.0126530254083714,0.0553754987702068,0.230343842949769,-0.106932678779961,0.0956426460415075,0.0253400446013807,0.126993683768134,-0.041718751492076,-0.0816388654494388,0.217603618249765,0.194579489432393,0.213237495327594,0.199844661440471,0.178101321237085,0.211515193831808,0.204319690114543,0.18016598899308,0.179272735134727,0.25965991455477,0.216245327708713,0.206655961337231,0.14986111676545,0.230592943322252,0.226790206858766,0.179361387272768,0.169342968499384,0.228077925707425,0.189357858012825,0.182792780537145,0.179113861568644,0.177842704895971,0.209154227766025,0.193442483447008,0.263979475727258,0.211236331559735,0.161015585407983,0.188974289144444,0.149683488753124,0.165909955572116,0.219373501900405,0.218194473737678,0.225047003193659,0.226332673969476,0.223684013367279
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000468!3.08e-11!333;UBERON:0002048!2.63e-09!14;UBERON:0000117!2.63e-09!14;UBERON:0000171!2.63e-09!14;UBERON:0000170!2.63e-09!14;UBERON:0005597!2.63e-09!14;UBERON:0000118!2.63e-09!14;UBERON:0005157!1.21e-07!20;UBERON:0000479!1.39e-07!349;UBERON:0004535!4.51e-07!23;UBERON:0001009!4.51e-07!23;UBERON:0005153!5.04e-07!17;UBERON:0007100!6.03e-07!18;UBERON:0000948!6.03e-07!18;UBERON:0005498!6.03e-07!18;UBERON:0004140!6.03e-07!18;UBERON:0009881!6.03e-07!18;UBERON:0004141!6.03e-07!18;UBERON:0003084!6.03e-07!18;UBERON:0007005!6.03e-07!18;UBERON:0004139!6.03e-07!18;UBERON:0004291!6.03e-07!18
}}
}}

Revision as of 20:55, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr17:67492779..67492797,-p@chr17:67492779..67492797
-
Mm9::chr17:67492942..67492953,-p@chr17:67492942..67492953
-
Mm9::chr17:67492958..67492970,-p@chr17:67492958..67492970
-
Mm9::chr17:67657708..67657712,-p@chr17:67657708..67657712
-
Mm9::chr17:67703606..67703622,-p6@Ptprm
Mm9::chr17:67703812..67703825,-p3@Ptprm
Mm9::chr17:67703838..67703860,-p1@Ptprm
Mm9::chr17:67703864..67703877,-p2@Ptprm
Mm9::chr17:67703882..67703893,-p4@Ptprm
Mm9::chr17:67704262..67704305,-p5@Ptprm
Mm9::chr18:62071187..62071264,-p2@Ablim3
Mm9::chr1:74009516..74009527,-p@chr1:74009516..74009527
-
Mm9::chr1:74009547..74009561,-p@chr1:74009547..74009561
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
multi-cellular organism3.08e-11333
lung2.63e-0914
respiratory tube2.63e-0914
respiration organ2.63e-0914
pair of lungs2.63e-0914
lung primordium2.63e-0914
lung bud2.63e-0914
epithelial fold1.21e-0720
tissue1.39e-07349
cardiovascular system4.51e-0723
circulatory system4.51e-0723
epithelial bud5.04e-0717
primary circulatory organ6.03e-0718
heart6.03e-0718
primitive heart tube6.03e-0718
primary heart field6.03e-0718
anterior lateral plate mesoderm6.03e-0718
heart tube6.03e-0718
heart primordium6.03e-0718
cardiac mesoderm6.03e-0718
cardiogenic plate6.03e-0718
heart rudiment6.03e-0718


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}