Coexpression cluster:C4288: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
|full_id=C4288_Fibroblast_amniotic_Smooth_Synoviocyte_salivary_gastric_Chondrocyte | |full_id=C4288_Fibroblast_amniotic_Smooth_Synoviocyte_salivary_gastric_Chondrocyte | ||
|id=C4288 | |id=C4288 | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype=CL:0000057!8.15e-18!76;CL:0000548!1.12e-12!679;CL:0000255!1.12e-12!679;CL:0002371!1.99e-12!588;CL:0002620!8.22e-10!23;CL:0002321!4.92e-09!250;CL:0000222!1.59e-07!121;CL:0000349!3.58e-07!19 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0003102! | |ontology_enrichment_uberon=UBERON:0003102!2.75e-15!99;UBERON:0000468!4.71e-11!656;UBERON:0002199!8.83e-11!46;UBERON:0002416!8.83e-11!46;UBERON:0002097!2.69e-10!41;UBERON:0000926!3.39e-10!315;UBERON:0004120!3.39e-10!315;UBERON:0006603!3.39e-10!315;UBERON:0000475!7.64e-09!264;UBERON:0000467!8.07e-09!624;UBERON:0000480!1.33e-08!625;UBERON:0004923!2.95e-08!66;UBERON:0000486!5.30e-08!83;UBERON:0004872!6.19e-08!83;UBERON:0002100!7.58e-08!199;UBERON:0007503!3.45e-07!78;UBERON:0005631!6.77e-07!14;UBERON:0000158!6.77e-07!14;UBERON:0002329!7.16e-07!71;UBERON:0003059!7.16e-07!71;UBERON:0007282!7.16e-07!71;UBERON:0004290!7.16e-07!71;UBERON:0009618!7.16e-07!71;UBERON:0005256!8.55e-07!122 | ||
|tf_chipseq_enrich=ATF3#467;3:22.4631745260087:8.81932387510763e-05:0.0012987610916418!BRCA1#672;3:20.1842306432238:0.000121570486027164:0.00164358575924802!CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0190586630912372!CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.0115534081512541!CHD2#1106;3:10.3440228341169:0.000903370110274688:0.00661945351483745!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0280414860365466!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0326554637354152!E2F4#1874;3:12.6680603152844:0.000491798700629898:0.00438063663071096!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0323380575110091!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0321603625188315!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.046373647012523!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.00763920871872467!GABPB1#2553;3:7.06768383618217:0.00283221282541742:0.015453397172236!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0108949347453164!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0128442617704896!JUN#3725;3:12.5128291923363:0.000510331399272625:0.00445267343430524!JUND#3727;3:6.99466394187103:0.00292184504273499:0.0157190838313604!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0187061096697235!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.00721711907211526!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0295355635626257!NANOG#79923;3:29.2447784810127:3.99627955670032e-05:0.000739488732498627!NRF1#4899;3:12.2102794477109:0.000549217240102001:0.00472368437280844!PAX5#5079;3:6.66956553117783:0.00337029099967726:0.0173359841270338!REST#5978;3:9.65002871612802:0.00111263624711459:0.0076960472224916!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.027762654916472!SIX5#147912;3:17.086715355459:0.000200406054632501:0.00240080384718557!STAT3#6774;3:10.5194649971542:0.000858918453041531:0.00644290629298315!TFAP2A#7020;3:16.518634373045:0.000221803388076634:0.00248897862333035!TFAP2C#7022;3:10.8092286098602:0.000791674657575313:0.00617396278095192!USF2#7392;3:12.9921973850696:0.000455897939342781:0.00422442772487097!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0330379297149377!ZBTB33#10009;3:31.6647250299812:3.14815888737575e-05:0.000634363430520232!ZNF143#7702;3:13.5008765522279:0.000406280496299717:0.00389995668686085 | |tf_chipseq_enrich=ATF3#467;3:22.4631745260087:8.81932387510763e-05:0.0012987610916418!BRCA1#672;3:20.1842306432238:0.000121570486027164:0.00164358575924802!CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0190586630912372!CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.0115534081512541!CHD2#1106;3:10.3440228341169:0.000903370110274688:0.00661945351483745!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0280414860365466!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0326554637354152!E2F4#1874;3:12.6680603152844:0.000491798700629898:0.00438063663071096!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0323380575110091!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0321603625188315!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.046373647012523!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.00763920871872467!GABPB1#2553;3:7.06768383618217:0.00283221282541742:0.015453397172236!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0108949347453164!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0128442617704896!JUN#3725;3:12.5128291923363:0.000510331399272625:0.00445267343430524!JUND#3727;3:6.99466394187103:0.00292184504273499:0.0157190838313604!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0187061096697235!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.00721711907211526!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0295355635626257!NANOG#79923;3:29.2447784810127:3.99627955670032e-05:0.000739488732498627!NRF1#4899;3:12.2102794477109:0.000549217240102001:0.00472368437280844!PAX5#5079;3:6.66956553117783:0.00337029099967726:0.0173359841270338!REST#5978;3:9.65002871612802:0.00111263624711459:0.0076960472224916!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.027762654916472!SIX5#147912;3:17.086715355459:0.000200406054632501:0.00240080384718557!STAT3#6774;3:10.5194649971542:0.000858918453041531:0.00644290629298315!TFAP2A#7020;3:16.518634373045:0.000221803388076634:0.00248897862333035!TFAP2C#7022;3:10.8092286098602:0.000791674657575313:0.00617396278095192!USF2#7392;3:12.9921973850696:0.000455897939342781:0.00422442772487097!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0330379297149377!ZBTB33#10009;3:31.6647250299812:3.14815888737575e-05:0.000634363430520232!ZNF143#7702;3:13.5008765522279:0.000406280496299717:0.00389995668686085 | ||
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.0460856,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.00829112,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.00130254,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.0236364,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.324808,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.0125303,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.0347684,0.064341,0.209032,0.0693924,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.00407722,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.230347,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.00428542,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,5.75739e-05,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.00549554,0.14193,0.37245,0.15606,0.0137227,0.0738599,0.126611,0.0101199,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.119261,0.0865903,0.0380459,0.130174,0.584917,0.713218,0.451377,0.635872,0.563047,0.517782,0.0853552,0.335423,0.261644,0.261553,0.118991,0.373681,0.309233,0.49143,0.330703,0.395854,0.061507,0.0078057,0.248224,0.271958,0.292154,0.405773,0.39729,0.581713,0.597171,0.187251,0.362792,0.181715,0.0186051,0.109988,0.330894,0.218329,0.427027,0.376924,0.463191,0.647576,0.528324,0.520763,0.370782,0.415647,0.484505,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.603208,0.283727,0.314747,0.577664,0.291709,0.448095,0.576651,0.416816,0.292835,0.476744,0.439556,0.373868,0.57762,0.608919,0.18237,0.706298,0.0310069,0.747852,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.625945,0.503058,0.513852,0.0389686,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.0641718,0.762864,0.0583074,0.412837,0.305671,0.546839,0.551561,0.00324632,0.218623,0.312808,0.117923,0.0451077,0.0747529,0.229003,0.650179,0.223844,0.50215,0.294698,0.0671437,5.45446e-06,0.0465597,0.327108,0.319027,0.278044,0.490301,0.428671,0.228096,0.336314,0.19763,0.15631,0.567452,0.421464,0.48267,0.420626,0.165111,0.135248,0.335105,0.144809,0.145539,0.385517,0.376191,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.18767,0.293698,0.284593,0.343734,0.306556,0.305777,0.601433,0.503082,0.169823,0.284629,0.262537,0.359455,0.226257,0.405955,0.102469,0.363685,0.464871,0.753577,0.206222,0.525396,0.651524,0.437176,0.269226,0.339277,0.552319,0.281425,0.141758,0.455379,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.539392,0.34988,0.475069,0.404569,0.6408,0.262389,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.0434097,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.0205132,0.132201,2.80029e-06,0.0481795,0.199971,0.0966069,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.0377931,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.0791124,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.190156,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,2.61649e-06,2.79364e-05,0.0473033,0.094881,0.118532,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.153605,0.655293,0.21727,0.289306,0.119215,0.192475,0.177967,0.0465298,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.43617,0.519327,0.206454,0.218192,0.108277,0.0673484,0.00613985,0.0494066,0.0958493,0.00171529,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.00921075,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.000415994,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.000797393,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,1.47161e-09,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.0364628,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.161789,0.0590944,0.247324,0.0169521,0.218229,0.231073,0.0020598,0.0743925,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.000247895,0.36927,0.0227305,0.407369,0.231447,0.18653,0.43956,0.37006,0.42622,0.448797,0.197484,0.0919774,0.36145,0.406019,0.381071,0.580441,0.276075,0.432035,0.722159,0.390366,0.48809,0.50058,0.443185,0.169835,0.616975,0.151996,0.227104,0.518585,0.617852,0.38649,0.284625,0.0344717,0.55194,0.729153,0.0465139,0.164197,0.462688,0.287881,0.574635,0.0283889,0.336276,0.468444,0.258219,0.446557,0.243383,0.0659137,0.0889613,0.73485,0.029557,0.161598,0.751174,0.644754,0.496032,0.799185,0.37357,0.0704414,0.477353,0.452741,0.399222,0.00415823,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.20075,0.314429,0.181415,0.282286,0.194707,0.616388,0.408413,0.516511,0.322213,0.28903,0.33942,0.0700181,0.0871388,0.522605,0.802166,0.537348,0.0267088,0.102227,0.416292,0.462712,0.382478,0.579431,0.204817,0.452428,0.138871,0.027191,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.373557,0.523625,0.408861,0.365487,0.178743,0.39088,0.363192,0.236011,0.203486,0.273398,0.375787,0.119167,0.351067,0.275347,0.637444,0.305885,0.241132,0.000122364,0.30666,0.303709,0.495883,0.386538,0.159081,0.250964,1.17227e-05,0.457886,0.0344603,0.220231,0.509064,0.020816,0.191517,0.0254647,0.235208,0.307334,0.459728,0.283463,0.563586,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.608187,0.387069,0.332774,0.00107377,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.0267847,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.0218443,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.0262794,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.0246892,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.0025753,0.00132285,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.00452173,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.0251447,0.252796,0.205954,0.0750181 | |tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.0460856,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.00829112,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.00130254,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.0236364,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.324808,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.0125303,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.0347684,0.064341,0.209032,0.0693924,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.00407722,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.230347,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.00428542,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,5.75739e-05,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.00549554,0.14193,0.37245,0.15606,0.0137227,0.0738599,0.126611,0.0101199,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.119261,0.0865903,0.0380459,0.130174,0.584917,0.713218,0.451377,0.635872,0.563047,0.517782,0.0853552,0.335423,0.261644,0.261553,0.118991,0.373681,0.309233,0.49143,0.330703,0.395854,0.061507,0.0078057,0.248224,0.271958,0.292154,0.405773,0.39729,0.581713,0.597171,0.187251,0.362792,0.181715,0.0186051,0.109988,0.330894,0.218329,0.427027,0.376924,0.463191,0.647576,0.528324,0.520763,0.370782,0.415647,0.484505,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.603208,0.283727,0.314747,0.577664,0.291709,0.448095,0.576651,0.416816,0.292835,0.476744,0.439556,0.373868,0.57762,0.608919,0.18237,0.706298,0.0310069,0.747852,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.625945,0.503058,0.513852,0.0389686,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.0641718,0.762864,0.0583074,0.412837,0.305671,0.546839,0.551561,0.00324632,0.218623,0.312808,0.117923,0.0451077,0.0747529,0.229003,0.650179,0.223844,0.50215,0.294698,0.0671437,5.45446e-06,0.0465597,0.327108,0.319027,0.278044,0.490301,0.428671,0.228096,0.336314,0.19763,0.15631,0.567452,0.421464,0.48267,0.420626,0.165111,0.135248,0.335105,0.144809,0.145539,0.385517,0.376191,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.18767,0.293698,0.284593,0.343734,0.306556,0.305777,0.601433,0.503082,0.169823,0.284629,0.262537,0.359455,0.226257,0.405955,0.102469,0.363685,0.464871,0.753577,0.206222,0.525396,0.651524,0.437176,0.269226,0.339277,0.552319,0.281425,0.141758,0.455379,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.539392,0.34988,0.475069,0.404569,0.6408,0.262389,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.0434097,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.0205132,0.132201,2.80029e-06,0.0481795,0.199971,0.0966069,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.0377931,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.0791124,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.190156,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,2.61649e-06,2.79364e-05,0.0473033,0.094881,0.118532,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.153605,0.655293,0.21727,0.289306,0.119215,0.192475,0.177967,0.0465298,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.43617,0.519327,0.206454,0.218192,0.108277,0.0673484,0.00613985,0.0494066,0.0958493,0.00171529,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.00921075,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.000415994,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.000797393,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,1.47161e-09,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.0364628,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.161789,0.0590944,0.247324,0.0169521,0.218229,0.231073,0.0020598,0.0743925,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.000247895,0.36927,0.0227305,0.407369,0.231447,0.18653,0.43956,0.37006,0.42622,0.448797,0.197484,0.0919774,0.36145,0.406019,0.381071,0.580441,0.276075,0.432035,0.722159,0.390366,0.48809,0.50058,0.443185,0.169835,0.616975,0.151996,0.227104,0.518585,0.617852,0.38649,0.284625,0.0344717,0.55194,0.729153,0.0465139,0.164197,0.462688,0.287881,0.574635,0.0283889,0.336276,0.468444,0.258219,0.446557,0.243383,0.0659137,0.0889613,0.73485,0.029557,0.161598,0.751174,0.644754,0.496032,0.799185,0.37357,0.0704414,0.477353,0.452741,0.399222,0.00415823,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.20075,0.314429,0.181415,0.282286,0.194707,0.616388,0.408413,0.516511,0.322213,0.28903,0.33942,0.0700181,0.0871388,0.522605,0.802166,0.537348,0.0267088,0.102227,0.416292,0.462712,0.382478,0.579431,0.204817,0.452428,0.138871,0.027191,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.373557,0.523625,0.408861,0.365487,0.178743,0.39088,0.363192,0.236011,0.203486,0.273398,0.375787,0.119167,0.351067,0.275347,0.637444,0.305885,0.241132,0.000122364,0.30666,0.303709,0.495883,0.386538,0.159081,0.250964,1.17227e-05,0.457886,0.0344603,0.220231,0.509064,0.020816,0.191517,0.0254647,0.235208,0.307334,0.459728,0.283463,0.563586,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.608187,0.387069,0.332774,0.00107377,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.0267847,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.0218443,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.0262794,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.0246892,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.0025753,0.00132285,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.00452173,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.0251447,0.252796,0.205954,0.0750181 | ||
}} | }} | ||
Revision as of 15:49, 19 October 2012
Full id: C4288_Fibroblast_amniotic_Smooth_Synoviocyte_salivary_gastric_Chondrocyte
Phase1 CAGE Peaks
| Hg19::chr3:14166542..14166566,+ | p3@TMEM43 |
| Hg19::chr3:14166567..14166598,+ | p2@TMEM43 |
| Hg19::chr3:14166625..14166649,+ | p1@TMEM43 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| fibroblast | 8.15e-18 | 76 |
| animal cell | 1.12e-12 | 679 |
| eukaryotic cell | 1.12e-12 | 679 |
| somatic cell | 1.99e-12 | 588 |
| skin fibroblast | 8.22e-10 | 23 |
| embryonic cell | 4.92e-09 | 250 |
| mesodermal cell | 1.59e-07 | 121 |
| extraembryonic cell | 3.58e-07 | 19 |
| Ontology term | p-value | n |
|---|---|---|
| surface structure | 2.75e-15 | 99 |
| multi-cellular organism | 4.71e-11 | 656 |
| integument | 8.83e-11 | 46 |
| integumental system | 8.83e-11 | 46 |
| skin of body | 2.69e-10 | 41 |
| mesoderm | 3.39e-10 | 315 |
| mesoderm-derived structure | 3.39e-10 | 315 |
| presumptive mesoderm | 3.39e-10 | 315 |
| organism subdivision | 7.64e-09 | 264 |
| anatomical system | 8.07e-09 | 624 |
| anatomical group | 1.33e-08 | 625 |
| organ component layer | 2.95e-08 | 66 |
| multilaminar epithelium | 5.30e-08 | 83 |
| splanchnic layer of lateral plate mesoderm | 6.19e-08 | 83 |
| trunk | 7.58e-08 | 199 |
| epithelial vesicle | 3.45e-07 | 78 |
| extraembryonic membrane | 6.77e-07 | 14 |
| membranous layer | 6.77e-07 | 14 |
| somite | 7.16e-07 | 71 |
| presomitic mesoderm | 7.16e-07 | 71 |
| presumptive segmental plate | 7.16e-07 | 71 |
| dermomyotome | 7.16e-07 | 71 |
| trunk paraxial mesoderm | 7.16e-07 | 71 |
| trunk mesenchyme | 8.55e-07 | 122 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| ATF3#467 | 3 | 22.4631745260087 | 8.81932387510763e-05 | 0.0012987610916418 |
| BRCA1#672 | 3 | 20.1842306432238 | 0.000121570486027164 | 0.00164358575924802 |
| CCNT2#905 | 3 | 6.33620157696263 | 0.00393075003576489 | 0.0190586630912372 |
| CEBPB#1051 | 3 | 7.97114762582482 | 0.00197418705528856 | 0.0115534081512541 |
| CHD2#1106 | 3 | 10.3440228341169 | 0.000903370110274688 | 0.00661945351483745 |
| CTCF#10664 | 3 | 5.36025637307503 | 0.006492509252767 | 0.0280414860365466 |
| E2F1#1869 | 3 | 4.90738921487932 | 0.00846098534723939 | 0.0326554637354152 |
| E2F4#1874 | 3 | 12.6680603152844 | 0.000491798700629898 | 0.00438063663071096 |
| E2F6#1876 | 3 | 5.01715573169739 | 0.0079176980688633 | 0.0323380575110091 |
| EGR1#1958 | 3 | 4.98817909481014 | 0.00805648813738344 | 0.0321603625188315 |
| ELF1#1997 | 3 | 4.25809795880754 | 0.0129517987505461 | 0.046373647012523 |
| ETS1#2113 | 3 | 9.72876092220234 | 0.00108584009258484 | 0.00763920871872467 |
| GABPB1#2553 | 3 | 7.06768383618217 | 0.00283221282541742 | 0.015453397172236 |
| HMGN3#9324 | 3 | 8.17854772335059 | 0.00182776694216421 | 0.0108949347453164 |
| IRF1#3659 | 3 | 7.6371637535639 | 0.00224469274729724 | 0.0128442617704896 |
| JUN#3725 | 3 | 12.5128291923363 | 0.000510331399272625 | 0.00445267343430524 |
| JUND#3727 | 3 | 6.99466394187103 | 0.00292184504273499 | 0.0157190838313604 |
| MAX#4149 | 3 | 6.45255550900712 | 0.00372191383426551 | 0.0187061096697235 |
| MXI1#4601 | 3 | 9.9615716287593 | 0.00101147054125902 | 0.00721711907211526 |
| MYC#4609 | 3 | 5.2222818716094 | 0.00702084375574015 | 0.0295355635626257 |
| NANOG#79923 | 3 | 29.2447784810127 | 3.99627955670032e-05 | 0.000739488732498627 |
| NRF1#4899 | 3 | 12.2102794477109 | 0.000549217240102001 | 0.00472368437280844 |
| PAX5#5079 | 3 | 6.66956553117783 | 0.00337029099967726 | 0.0173359841270338 |
| REST#5978 | 3 | 9.65002871612802 | 0.00111263624711459 | 0.0076960472224916 |
| SIN3A#25942 | 3 | 5.40888472681514 | 0.00631896197799152 | 0.027762654916472 |
| SIX5#147912 | 3 | 17.086715355459 | 0.000200406054632501 | 0.00240080384718557 |
| STAT3#6774 | 3 | 10.5194649971542 | 0.000858918453041531 | 0.00644290629298315 |
| TFAP2A#7020 | 3 | 16.518634373045 | 0.000221803388076634 | 0.00248897862333035 |
| TFAP2C#7022 | 3 | 10.8092286098602 | 0.000791674657575313 | 0.00617396278095192 |
| USF2#7392 | 3 | 12.9921973850696 | 0.000455897939342781 | 0.00422442772487097 |
| YY1#7528 | 3 | 4.91117074985386 | 0.00844145534180826 | 0.0330379297149377 |
| ZBTB33#10009 | 3 | 31.6647250299812 | 3.14815888737575e-05 | 0.000634363430520232 |
| ZNF143#7702 | 3 | 13.5008765522279 | 0.000406280496299717 | 0.00389995668686085 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
