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MCL coexpression mm9:74: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!5.03e-34!31;UBERON:0005409!1.96e-21!47;UBERON:0000344!7.62e-16!15;UBERON:0003350!1.07e-10!9;UBERON:0004808!1.07e-10!9;UBERON:0001277!1.07e-10!9;UBERON:0001242!1.58e-10!13;UBERON:0000060!1.58e-10!13;UBERON:0001262!1.58e-10!13;UBERON:0004786!1.58e-10!13;UBERON:0004923!1.74e-09!24;UBERON:0001007!4.50e-09!116;UBERON:0001555!4.50e-09!116;UBERON:0007026!4.50e-09!116;UBERON:0004119!7.33e-09!118;UBERON:0000925!7.33e-09!118;UBERON:0006595!7.33e-09!118;UBERON:0001962!7.88e-09!2;UBERON:0001961!7.88e-09!2;UBERON:0001744!7.88e-09!2;UBERON:0000485!1.03e-08!11;UBERON:0004921!5.08e-07!114
|ontology_enrichment_uberon=UBERON:0000160!5.03e-34!31;UBERON:0005409!1.96e-21!47;UBERON:0000344!7.62e-16!15;UBERON:0003350!1.07e-10!9;UBERON:0004808!1.07e-10!9;UBERON:0001277!1.07e-10!9;UBERON:0001242!1.58e-10!13;UBERON:0000060!1.58e-10!13;UBERON:0001262!1.58e-10!13;UBERON:0004786!1.58e-10!13;UBERON:0004923!1.74e-09!24;UBERON:0001007!4.50e-09!116;UBERON:0001555!4.50e-09!116;UBERON:0007026!4.50e-09!116;UBERON:0004119!7.33e-09!118;UBERON:0000925!7.33e-09!118;UBERON:0006595!7.33e-09!118;UBERON:0001962!7.88e-09!2;UBERON:0001961!7.88e-09!2;UBERON:0001744!7.88e-09!2;UBERON:0000485!1.03e-08!11;UBERON:0004921!5.08e-07!114
|tfbs_overrepresentation_for_novel_motifs=0.307976,0.0793265,0.0962107,1.23218,0.214697,0.115766,0.007891,0.88207,0.525505,4.47805e-05,0.0308594,0.272292,0.444167,0.0651727,0.101564,0,0.0282063,1.10318,0.327006,0.757034,0.26991,0.0238339,0.214041,0.579786,0.461204,0.00355427,5.76304,0.346947,0.000915784,0.275069,0.0721574,0.573012,0.242347,0.782043,0.000985925,0.030421,0.00165731,0.0928071,0.0918437,1.55744e-05,0.143348,0.0398071,0.501954,0.898523,0.0210471,0.211416,0.0118824,0.0264496,3.15586,0.0798612,0.301461,0.0550702,0.668953,0.154349,1.98896,0.515057,0.62373,0.00517642,0.416078,0.0302939,0.15239,0.0232328,0.531619,0.280145,0.0126144,0.570442,0.621136,0.771003,0.776543,0.188438,0.0699542,0.403501,0.0123876,0.196948,5.96215e-05,0.0720343,0.671694,0.304554,1.39754,0.638405,1.824,0.0331827,0.360566,0.00430335,0.108524,5.21601e-11,0.00323048,0.103444,0.0428634,0.401133,0.119014,0.270452,0.90804,0.081201,0.035213,0.153905,0.512485,0.18943,0.330464,2.73463e-06,0.0445771,0.172363,0.0353308,0.302609,0.163573,0.213214,0.00789867,0.17133,0.00102985,0.000216498,0.128565,0.331637,0.509047,0.00401124,0.775655,0.138377,0.000114144,0.0558281,0.0285603,0.333762,3.42604,0.605073,0.278905,0.176005,0.14918,0.139562,0.324957,0.0145932,0.0883137,0.182523,0.128727,0.14334,0.265837,0.259598,0.132715,0.14678,0.0298646,0.0180578,0.109668,0.712915,0.376625,0.0908027,0.461775,1.25256,0.0221254,0.00646676,0.0420838,0.677386,0.2453,0.00149607,0.0609048,1.56982e-08,0.641239,0.827764,0.257554,0.0633204,0.0556851,0.439411,0.299337,0.0135889,0.365695,0.491188,0.0510427,0.00349463,0.282044,0.143327,0.549235,0.268368,0.00775486
}}
}}

Revision as of 17:45, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:24507573..24507582,-p@chr10:24507573..24507582
-
Mm9::chr10:24555971..24555987,-p1@Enpp3
Mm9::chr11:109333894..109333905,-p14@Slc16a6
Mm9::chr11:109333925..109333953,-p11@Slc16a6
Mm9::chr11:115196102..115196163,+p1@Otop3
Mm9::chr11:120535011..120535030,+p6@Aspscr1
Mm9::chr11:120924615..120924633,-p3@Sectm1b
Mm9::chr11:78279085..78279098,+p4@Slc46a1
Mm9::chr11:78279169..78279191,+p2@Slc46a1
Mm9::chr11:78279199..78279237,+p1@Slc46a1
Mm9::chr11:94063508..94063517,-p@chr11:94063508..94063517
-
Mm9::chr11:95698891..95698898,-p@chr11:95698891..95698898
-
Mm9::chr11:95936681..95936716,-p@chr11:95936681..95936716
-
Mm9::chr13:114560102..114560108,-p@chr13:114560102..114560108
-
Mm9::chr13:19269774..19269799,+p1@uc007poq.1
Mm9::chr13:31530179..31530188,-p@chr13:31530179..31530188
-
Mm9::chr13:31531635..31531644,-p@chr13:31531635..31531644
-
Mm9::chr13:31533981..31534013,-p@chr13:31533981..31534013
-
Mm9::chr14:15535556..15535587,+p1@Slc4a7
Mm9::chr14:51575809..51575844,+p1@Pnp2
Mm9::chr14:67778077..67778094,+p@chr14:67778077..67778094
+
Mm9::chr16:33819763..33819780,+p@chr16:33819763..33819780
+
Mm9::chr16:33819793..33819805,+p@chr16:33819793..33819805
+
Mm9::chr16:48412521..48412534,-p1@Gm5485
Mm9::chr16:55816639..55816653,-p@chr16:55816639..55816653
-
Mm9::chr16:79091310..79091319,-p2@Tmprss15
Mm9::chr16:79091323..79091352,-p1@Tmprss15
Mm9::chr17:13187033..13187037,-p@chr17:13187033..13187037
-
Mm9::chr17:30552789..30552793,-p@chr17:30552789..30552793
-
Mm9::chr18:56547114..56547143,+p@chr18:56547114..56547143
+
Mm9::chr18:64351398..64351401,-p@chr18:64351398..64351401
-
Mm9::chr18:64494498..64494502,-p@chr18:64494498..64494502
-
Mm9::chr18:64499442..64499445,-p@chr18:64499442..64499445
-
Mm9::chr18:64499879..64499895,+p3@Onecut2
Mm9::chr18:64500223..64500240,+p@chr18:64500223..64500240
+
Mm9::chr18:64501996..64502033,-p@chr18:64501996..64502033
-
Mm9::chr19:10039120..10039128,-p@chr19:10039120..10039128
-
Mm9::chr19:10055172..10055187,+p@chr19:10055172..10055187
+
Mm9::chr19:29003713..29003727,-p3@4430402I18Rik
Mm9::chr19:32670272..32670289,+p1@Papss2
Mm9::chr19:32719633..32719650,+p@chr19:32719633..32719650
+
Mm9::chr19:39135488..39135505,+p1@Cyp2c65
Mm9::chr19:39188392..39188406,+p1@Cyp2c66
Mm9::chr19:55588734..55588745,+p@chr19:55588734..55588745
+
Mm9::chr19:5878622..5878644,+p2@Slc25a45
Mm9::chr19:6645146..6645151,+p@chr19:6645146..6645151
+
Mm9::chr1:107054430..107054437,-p@chr1:107054430..107054437
-
Mm9::chr1:107054443..107054459,-p@chr1:107054443..107054459
-
Mm9::chr1:107054473..107054482,-p@chr1:107054473..107054482
-
Mm9::chr1:165219345..165219366,-p7@Prrx1
Mm9::chr1:187255795..187255808,+p@chr1:187255795..187255808
+
Mm9::chr1:187278859..187278874,+p3@Slc30a10
Mm9::chr1:187278931..187278967,+p1@Slc30a10
Mm9::chr1:31073673..31073681,-p@chr1:31073673..31073681
-
Mm9::chr1:31073728..31073733,-p@chr1:31073728..31073733
-
Mm9::chr1:45983346..45983405,-p2@Slc40a1
Mm9::chr1:83034986..83034997,-p3@Slc19a3
Mm9::chr1:83035007..83035034,-p1@Slc19a3
Mm9::chr1:88994673..88994691,-p@chr1:88994673..88994691
-
Mm9::chr1:88995114..88995133,-p@chr1:88995114..88995133
-
Mm9::chr1:88995376..88995386,-p@chr1:88995376..88995386
-
Mm9::chr1:88995452..88995479,-p@chr1:88995452..88995479
-
Mm9::chr1:88995651..88995675,+p@chr1:88995651..88995675
+
Mm9::chr1:88995710..88995719,-p@chr1:88995710..88995719
-
Mm9::chr1:88995994..88996003,-p@chr1:88995994..88996003
-
Mm9::chr1:88996020..88996029,-p@chr1:88996020..88996029
-
Mm9::chr1:88996124..88996136,-p@chr1:88996124..88996136
-
Mm9::chr1:88996275..88996296,+p@chr1:88996275..88996296
+
Mm9::chr1:88996309..88996322,-p@chr1:88996309..88996322
-
Mm9::chr1:88996756..88996767,-p@chr1:88996756..88996767
-
Mm9::chr1:88996891..88996929,-p@chr1:88996891..88996929
-
Mm9::chr1:88997154..88997167,-p@chr1:88997154..88997167
-
Mm9::chr1:88997173..88997187,-p@chr1:88997173..88997187
-
Mm9::chr1:88998165..88998192,-p1@Alpi
Mm9::chr1:88998205..88998211,-p2@Alpi
Mm9::chr1:88998290..88998294,-p3@Alpi
Mm9::chr1:88998811..88998827,-p@chr1:88998811..88998827
-
Mm9::chr1:89021521..89021535,+p1@Akp3
Mm9::chr1:89021971..89021978,+p@chr1:89021971..89021978
+
Mm9::chr1:89022263..89022271,+p@chr1:89022263..89022271
+
Mm9::chr1:89022293..89022305,-p@chr1:89022293..89022305
-
Mm9::chr1:89022308..89022315,-p@chr1:89022308..89022315
-
Mm9::chr1:89022321..89022324,-p@chr1:89022321..89022324
-
Mm9::chr1:89022506..89022513,+p@chr1:89022506..89022513
+
Mm9::chr1:89022542..89022552,+p@chr1:89022542..89022552
+
Mm9::chr1:89022572..89022579,+p@chr1:89022572..89022579
+
Mm9::chr1:89022898..89022908,+p@chr1:89022898..89022908
+
Mm9::chr1:89023300..89023306,+p@chr1:89023300..89023306
+
Mm9::chr1:89023330..89023340,+p@chr1:89023330..89023340
+
Mm9::chr1:89023373..89023383,-p@chr1:89023373..89023383
-
Mm9::chr1:89023384..89023393,+p@chr1:89023384..89023393
+
Mm9::chr1:89023508..89023520,+p@chr1:89023508..89023520
+
Mm9::chr1:89023536..89023546,+p@chr1:89023536..89023546
+
Mm9::chr1:89023549..89023557,+p@chr1:89023549..89023557
+
Mm9::chr1:89023566..89023570,+p@chr1:89023566..89023570
+
Mm9::chr1:89023592..89023602,+p@chr1:89023592..89023602
+
Mm9::chr1:89023615..89023625,+p@chr1:89023615..89023625
+
Mm9::chr1:89023632..89023638,+p@chr1:89023632..89023638
+
Mm9::chr1:89023669..89023676,+p@chr1:89023669..89023676
+
Mm9::chr1:89023699..89023703,-p@chr1:89023699..89023703
-
Mm9::chr1:89023905..89023913,+p@chr1:89023905..89023913
+
Mm9::chr1:89023924..89023949,+p@chr1:89023924..89023949
+
Mm9::chr1:89023961..89023966,-p@chr1:89023961..89023966
-
Mm9::chr1:89023983..89023994,+p@chr1:89023983..89023994
+
Mm9::chr1:89024110..89024116,+p@chr1:89024110..89024116
+
Mm9::chr1:89024152..89024171,-p@chr1:89024152..89024171
-
Mm9::chr1:89024171..89024176,+p@chr1:89024171..89024176
+
Mm9::chr1:89024195..89024201,+p@chr1:89024195..89024201
+
Mm9::chr1:89024283..89024286,+p@chr1:89024283..89024286
+
Mm9::chr1:89024303..89024315,+p@chr1:89024303..89024315
+
Mm9::chr1:89024323..89024367,-p@chr1:89024323..89024367
-
Mm9::chr1:89024384..89024408,-p@chr1:89024384..89024408
-
Mm9::chr1:89024408..89024411,+p@chr1:89024408..89024411
+
Mm9::chr1:89024478..89024488,+p@chr1:89024478..89024488
+
Mm9::chr1:89024503..89024528,+p@chr1:89024503..89024528
+
Mm9::chr1:89024532..89024549,+p@chr1:89024532..89024549
+
Mm9::chr1:89024582..89024587,+p@chr1:89024582..89024587
+
Mm9::chr1:89024623..89024626,+p@chr1:89024623..89024626
+
Mm9::chr1:89024653..89024667,+p@chr1:89024653..89024667
+
Mm9::chr1:89024721..89024737,+p@chr1:89024721..89024737
+
Mm9::chr1:89024761..89024764,+p@chr1:89024761..89024764
+
Mm9::chr1:89024773..89024782,+p@chr1:89024773..89024782
+
Mm9::chr1:89024855..89024877,-p@chr1:89024855..89024877
-
Mm9::chr1:89024924..89024940,-p@chr1:89024924..89024940
-
Mm9::chr1:89024943..89024953,-p@chr1:89024943..89024953
-
Mm9::chr1:89024948..89024963,+p@chr1:89024948..89024963
+
Mm9::chr1:89025264..89025272,+p@chr1:89025264..89025272
+
Mm9::chr1:90034939..90034946,+p1@Ugt1a6a
Mm9::chr2:122221951..122221953,-p@chr2:122221951..122221953
-
Mm9::chr2:163556097..163556108,-p@chr2:163556097..163556108
-
Mm9::chr2:163575905..163575919,-p1@Ada
Mm9::chr2:75551077..75551096,-p@chr2:75551077..75551096
-
Mm9::chr2:75553101..75553106,+p@chr2:75553101..75553106
+
Mm9::chr3:107772080..107772095,-p1@Gstm3
Mm9::chr3:130545052..130545056,-p@chr3:130545052..130545056
-
Mm9::chr3:137976243..137976257,+p1@Adh6a
Mm9::chr3:73510581..73510592,-p@chr3:73510581..73510592
-
Mm9::chr4:108064054..108064066,+p@chr4:108064054..108064066
+
Mm9::chr4:153733851..153733868,-p@chr4:153733851..153733868
-
Mm9::chr4:55724573..55724578,+p@chr4:55724573..55724578
+
Mm9::chr4:61516822..61516827,-p@chr4:61516822..61516827
-
Mm9::chr5:101079655..101079663,+p@chr5:101079655..101079663
+
Mm9::chr5:124520651..124520676,+p@chr5:124520651..124520676
+
Mm9::chr5:138362840..138362856,-p1@Cyp3a13
Mm9::chr5:148047120..148047133,-p@chr5:148047120..148047133
-
Mm9::chr5:73731127..73731133,-p@chr5:73731127..73731133
-
Mm9::chr5:82230038..82230048,-p@chr5:82230038..82230048
-
Mm9::chr5:87853226..87853230,-p1@Ugt2b38
Mm9::chr6:108423061..108423076,+p@chr6:108423061..108423076
+
Mm9::chr6:115311132..115311147,+p9@Pparg
Mm9::chr6:128550081..128550085,-p@chr6:128550081..128550085
-
Mm9::chr6:129538136..129538144,+p@chr6:129538136..129538144
+
Mm9::chr6:142753013..142753031,-p1@Gm766
Mm9::chr6:24118083..24118097,-p1@Slc13a1
Mm9::chr6:34938438..34938455,-p@chr6:34938438..34938455
-
Mm9::chr7:111455656..111455660,-p@chr7:111455656..111455660
-
Mm9::chr7:111656326..111656350,-p1@Trim30d
Mm9::chr7:16957541..16957570,-p@chr7:16957541..16957570
-
Mm9::chr7:26682670..26682691,+p1@Cyp2b10
Mm9::chr7:57014909..57014933,+p3@Htatip2
Mm9::chr7:57014949..57014960,+p5@Htatip2
Mm9::chr7:88258146..88258158,+p@chr7:88258146..88258158
+
Mm9::chr7:88259685..88259694,+p2@Slc28a1
Mm9::chr8:107355491..107355498,+p3@Ces2b
Mm9::chr8:107355501..107355509,+p2@Ces2b
Mm9::chr8:107370961..107370979,+p1@Ces2c
Mm9::chr8:107524724..107524732,+p@chr8:107524724..107524732
+
Mm9::chr8:42101154..42101185,-p13@Mtus1
Mm9::chr8:42101649..42101675,-p10@Mtus1
Mm9::chr8:67653273..67653282,-p4@ENSMUST00000098713
Mm9::chr8:90642678..90642715,+p2@Tmem188
Mm9::chr9:100888368..100888379,-p@chr9:100888368..100888379
-
Mm9::chr9:100888395..100888423,-p@chr9:100888395..100888423
-
Mm9::chr9:108756891..108756902,-p@chr9:108756891..108756902
-
Mm9::chr9:108757861..108757868,+p@chr9:108757861..108757868
+
Mm9::chr9:108828617..108828637,+p@chr9:108828617..108828637
+
Mm9::chr9:54697871..54697875,-p@chr9:54697871..54697875
-
Mm9::chrX:109608875..109608890,+p1@2010106E10Rik
Mm9::chrX:109671733..109671742,+p@chrX:109671733..109671742
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0015103inorganic anion transmembrane transporter activity0.00514924822035792
GO:0005506iron ion binding0.00514924822035792
GO:0050381unspecific monooxygenase activity0.00514924822035792
GO:0004035alkaline phosphatase activity0.00521089416858834
GO:0016712oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen0.00521089416858834
GO:0022891substrate-specific transmembrane transporter activity0.00523803575981668
GO:0004497monooxygenase activity0.00680743923071851
GO:0015380anion exchanger activity0.00712892953292769
GO:0005542folic acid binding0.00712892953292769
GO:0022857transmembrane transporter activity0.00712892953292769
GO:0015106bicarbonate transmembrane transporter activity0.00712892953292769
GO:0015301anion:anion antiporter activity0.00712892953292769
GO:0000041transition metal ion transport0.00712892953292769
GO:0005792microsome0.00721642251051719
GO:0015108chloride transmembrane transporter activity0.00721642251051719
GO:0042598vesicular fraction0.00721642251051719
GO:0006812cation transport0.00721642251051719
GO:0006810transport0.00721642251051719
GO:0022892substrate-specific transporter activity0.00791433396164989
GO:0051234establishment of localization0.00791433396164989
GO:0022804active transmembrane transporter activity0.00791433396164989
GO:0006811ion transport0.00791433396164989
GO:0015291secondary active transmembrane transporter activity0.00791433396164989
GO:0016491oxidoreductase activity0.0124565273912681
GO:0051179localization0.0124565273912681
GO:0031975envelope0.0141690086600273
GO:0031967organelle envelope0.0141690086600273
GO:0030001metal ion transport0.016093860951146
GO:0005743mitochondrial inner membrane0.0167995100044327
GO:0019866organelle inner membrane0.0185470801125522
GO:0006826iron ion transport0.0185470801125522
GO:0015075ion transmembrane transporter activity0.0186670961025181
GO:0046872metal ion binding0.0186670961025181
GO:0008509anion transmembrane transporter activity0.0186670961025181
GO:0031966mitochondrial membrane0.0186670961025181
GO:0005624membrane fraction0.0193196957794729
GO:0043167ion binding0.0193196957794729
GO:0015886heme transport0.0193196957794729
GO:0015499formate transmembrane transporter activity0.0193196957794729
GO:0015851nucleobase transport0.0193196957794729
GO:0015724formate transport0.0193196957794729
GO:0015232heme transporter activity0.0193196957794729
GO:0015855pyrimidine transport0.0193196957794729
GO:0005740mitochondrial envelope0.0193196957794729
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen0.0193196957794729
GO:0015297antiporter activity0.0246852861902725
GO:0000267cell fraction0.0271937295608852
GO:0044429mitochondrial part0.0271937295608852
GO:0031090organelle membrane0.0271937295608852
GO:0004781sulfate adenylyltransferase (ATP) activity0.0271937295608852
GO:0015234thiamin transmembrane transporter activity0.0271937295608852
GO:0015888thiamin transport0.0271937295608852
GO:0046021regulation of transcription from RNA polymerase II promoter, mitotic0.0271937295608852
GO:0050872white fat cell differentiation0.0271937295608852
GO:0004779sulfate adenylyltransferase activity0.0271937295608852
GO:0045896regulation of transcription, mitotic0.0271937295608852
GO:0015205nucleobase transmembrane transporter activity0.0271937295608852
GO:0006063uronic acid metabolic process0.0271937295608852
GO:0046022positive regulation of transcription from RNA polymerase II promoter, mitotic0.0271937295608852
GO:0019585glucuronate metabolic process0.0271937295608852
GO:0005350pyrimidine transmembrane transporter activity0.0271937295608852
GO:0045897positive regulation of transcription, mitotic0.0271937295608852
GO:0004020adenylylsulfate kinase activity0.0271937295608852
GO:0046914transition metal ion binding0.0282199347950114
GO:0006820anion transport0.0297706266492854
GO:0009117nucleotide metabolic process0.0351681350423161
GO:0009152purine ribonucleotide biosynthetic process0.0351681350423161
GO:0004322ferroxidase activity0.0351681350423161
GO:0051181cofactor transport0.0351681350423161
GO:0045600positive regulation of fat cell differentiation0.0351681350423161
GO:0004528phosphodiesterase I activity0.0351681350423161
GO:0016724oxidoreductase activity, oxidizing metal ions, oxygen as acceptor0.0351681350423161
GO:0008518reduced folate carrier activity0.0351681350423161
GO:0009260ribonucleotide biosynthetic process0.0387930557971987
GO:0055086nucleobase, nucleoside and nucleotide metabolic process0.0397211960290843
GO:0009150purine ribonucleotide metabolic process0.0412006989782975
GO:0006164purine nucleotide biosynthetic process0.0412006989782975
GO:0043169cation binding0.0412006989782975
GO:0000103sulfate assimilation0.0412006989782975
GO:0051180vitamin transport0.0412006989782975
GO:0005381iron ion transmembrane transporter activity0.0412006989782975
GO:0015701bicarbonate transport0.0412006989782975
GO:0006791sulfur utilization0.0412006989782975
GO:0009259ribonucleotide metabolic process0.0445872156103694
GO:0006163purine nucleotide metabolic process0.0490314300689815
GO:0004024alcohol dehydrogenase activity, zinc-dependent0.0496553565679924



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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