Personal tools

MCL coexpression mm9:1582: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 6: Line 6:
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0003126!5.18e-14!3;UBERON:0001005!5.18e-14!3;UBERON:0007196!5.18e-14!3;UBERON:0001558!5.18e-14!3;UBERON:0002038!6.77e-13!3;UBERON:0009663!6.77e-13!3;UBERON:0009661!6.77e-13!3;UBERON:0000125!6.77e-13!3;UBERON:0002308!6.77e-13!3;UBERON:0002950!8.51e-10!4;UBERON:0001891!8.51e-10!4;UBERON:0009616!8.51e-10!4;UBERON:0010286!8.51e-10!4;UBERON:0002256!5.67e-09!2
|ontology_enrichment_uberon=UBERON:0003126!5.18e-14!3;UBERON:0001005!5.18e-14!3;UBERON:0007196!5.18e-14!3;UBERON:0001558!5.18e-14!3;UBERON:0002038!6.77e-13!3;UBERON:0009663!6.77e-13!3;UBERON:0009661!6.77e-13!3;UBERON:0000125!6.77e-13!3;UBERON:0002308!6.77e-13!3;UBERON:0002950!8.51e-10!4;UBERON:0001891!8.51e-10!4;UBERON:0009616!8.51e-10!4;UBERON:0010286!8.51e-10!4;UBERON:0002256!5.67e-09!2
|tfbs_overrepresentation_for_novel_motifs=0.557864,1.02681,0.529553,0.603273,0.406364,0.618805,0.715644,0.300268,0.310789,0.370407,1.60538,0.702872,0.300533,1.72941,0.424775,0,0.930881,0.397593,0.283802,0.185796,1.22707,0.874994,0.727684,0.404661,0.537749,0.757752,0.754069,0.641282,1.15581,0.227599,0.626183,1.03545,0.395107,0.253145,0.425309,0.0566307,0.384813,0.699032,0.360612,0.328675,0.401916,0.631725,0.419293,0.426986,0.4934,1.44282,1.97509,1.58288,0.115788,0.459555,0.912738,0.786094,0.220111,1.18062,1.19842,0.73621,0.469329,0.689304,0.731291,0.734051,1.01481,0.796017,0.323911,0.901018,0.747985,0.943088,1.33705,1.68977,1.00999,1.54147,0.509047,0.30684,0.152094,1.23259,0.257421,0.686172,0.253065,0.835925,0.997094,0.494135,0.308173,0.948899,0.794502,0.293164,1.1148,0.0793594,1.53502,0.227755,0.852952,1.85284,1.40768,1.11989,1.04863,0.412897,0.356133,0.3366,0.297538,1.05152,0.848095,0.590368,0.384901,1.03517,1.16282,0.913356,0.91226,0.631253,0.97421,0.653843,0.499439,0.491483,0.550229,1.16464,0.495367,0.674448,1.41481,0.399936,0.673306,0.607321,0.932233,0.380707,1.23809,0.879184,2.99663,0.834976,1.46955,1.00091,0.724289,1.04166,1.33551,0.416189,1.14546,0.595426,1.3055,1.77493,1.43666,2.70447,0.566955,0.633235,1.3869,2.2222,1.82084,1.34183,0.772375,1.04623,0.905521,0.632211,0.851091,2.18247,0.569503,0.408309,1.89099,0.416978,1.18223,0.343194,0.749664,1.26545,0.787153,0.438007,0.555203,0.566652,1.39653,1.11392,1.00137,0.547782,4.91996,0.741834,0.383572,0.701187,1.60845
}}
}}

Revision as of 20:07, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:70018532..70018540,-p@chr11:70018532..70018540
-
Mm9::chr11:70028455..70028466,+p5@Slc16a11
Mm9::chr11:70028476..70028484,+p8@Slc16a11
Mm9::chr11:70028514..70028521,+p7@Slc16a11
Mm9::chr11:70028532..70028560,+p2@Slc16a11


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
duct epithelial cell5.18e-143
epithelial cell of tracheobronchial tree5.18e-143
branched duct epithelial cell5.18e-143
epithelial cell of lower respiratory tract5.18e-143
respiratory epithelial cell5.18e-143
tracheal epithelial cell5.18e-143
tracheoblast5.18e-143
neuron of the substantia nigra6.77e-133
insulating cell1.52e-092
myelin accumulating cell1.52e-092
Schwann cell1.52e-092
non-myelinating Schwann cell1.52e-092
myelinating Schwann cell;;Schwann cell1.52e-092
terminal Schwann cell1.52e-092
immature Schwann cell1.52e-092
Schwann cell precursor1.52e-092
neuron of the dorsal spinal cord5.67e-092
stuff accumulating cell6.49e-076
migratory neural crest cell8.79e-0710
neuron associated cell8.79e-0710
glial cell (sensu Vertebrata)8.79e-0710
neuron associated cell (sensu Vertebrata)8.79e-0710
glial cell8.79e-0710
glioblast8.79e-0710
glioblast (sensu Vertebrata)8.79e-0710


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}