FFCP PHASE1:Hg19::chr10:106205489..106205498,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C406|description=CAGE_peak_at_chr10:106205489..106205498,+|id=chr10:106205489..106205498,+|ontology_enrichment_celltype=CL:0002166!1.22e-19!3;CL:0002621!2.25e-19!3;CL:0002159!1.29e-16!13;CL:0002077!3.64e-08!33;CL:0000066!1.16e-07!254;CL:0000362!2.45e-07!8;CL:0000319!2.52e-07!1;CL:0002327!9.11e-07!4|ontology_enrichment_celltype_v019=CL:0002166;8.85e-75;3!CL:0002621;6.61e-74;3!CL:0002159;2.68e-44;14!CL:0002077;3.46e-16;34!CL:0000317;1.14e-13;2!CL:1000448;1.14e-13;2!CL:0002308;1.14e-13;2!CL:0002140;1.14e-13;2!CL:0000362;5.83e-12;9!CL:0002251;8.42e-12;20|ontology_enrichment_celltype_v019_2=CL:0002166,7.81e-75,3;CL:0002621,9.64e-74,3;CL:0002159,2.34e-44,14;CL:0002077,1.60e-18,34;CL:0000317,8.28e-14,2;CL:1000448,8.28e-14,2;CL:0002308,8.28e-14,2;CL:0002140,8.28e-14,2;CL:0000362,5.52e-12,9;CL:0002251,8.90e-12,20;CL:0000221,1.20e-08,72|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3030!2.52e-07!1|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001949!2.25e-19!3;UBERON:0001708!7.27e-15!4;UBERON:0001704!7.27e-15!4;UBERON:0002090!4.57e-10!6;UBERON:0001828!1.48e-07!8;UBERON:0001911!9.11e-07!4;UBERON:0005333!9.11e-07!4;UBERON:0008425!9.11e-07!4;UBERON:0005311!9.11e-07!4;UBERON:0002119!9.65e-07!4;UBERON:0004531!9.65e-07!4|ontology_enrichment_uberon_v019=UBERON:0001949;6.61e-74;3!UBERON:0001708;2.37e-56;4!UBERON:0008895;2.37e-56;4!UBERON:0011159;2.76e-45;5!UBERON:0003929;3.02e-32;7!UBERON:0003350;2.49e-28;8!UBERON:0001828;2.49e-28;8!UBERON:0011137;4.49e-21;11!UBERON:0010323;4.49e-21;11!UBERON:0010371;9.01e-21;31!UBERON:0000486;3.61e-19;12!UBERON:0003729;9.34e-18;13!UBERON:0000075;9.86e-15;16!UBERON:0002419;1.14e-13;2!UBERON:0007771;1.14e-13;2!UBERON:0003297;1.14e-13;2!UBERON:0001821;1.14e-13;2!UBERON:0003487;1.14e-13;2!UBERON:0001820;1.14e-13;2!UBERON:0000161;2.19e-12;19!UBERON:0000166;2.19e-12;19!UBERON:0000344;8.42e-12;20!UBERON:0004807;8.62e-11;22!UBERON:0004765;2.48e-09;26!UBERON:0000165;1.28e-08;28!UBERON:0001003;1.49e-07;15!UBERON:0007376;1.49e-07;15!UBERON:0001434;5.50e-07;36|ontology_enrichment_uberon_v019_2=UBERON:0001949,9.64e-74,3;UBERON:0001708,2.15e-56,4;UBERON:0008895,2.15e-56,4;UBERON:0011159,2.56e-45,5;UBERON:0010188,6.30e-38,6;UBERON:0002539,6.30e-38,6;UBERON:0008816,6.30e-38,6;UBERON:0003350,2.87e-28,8;UBERON:0001828,2.87e-28,8;UBERON:0010323,4.34e-21,11;UBERON:0003729,1.02e-17,13;UBERON:0011137,9.68e-17,14;UBERON:0000033,4.82e-16,56;UBERON:0003102,5.28e-16,99;UBERON:0000075,9.63e-15,16;UBERON:0000153,1.66e-14,62;UBERON:0007811,1.66e-14,62;UBERON:0002419,8.28e-14,2;UBERON:0007771,8.28e-14,2;UBERON:0003297,8.28e-14,2;UBERON:0001821,8.28e-14,2;UBERON:0003487,8.28e-14,2;UBERON:0001820,8.28e-14,2;UBERON:0005089,8.28e-14,2;UBERON:0005088,8.28e-14,2;UBERON:0008814,3.47e-13,18;UBERON:0000344,8.90e-12,20;UBERON:0000166,9.07e-11,22;UBERON:0004807,1.33e-08,28;UBERON:0000165,2.51e-08,29;UBERON:0000930,2.51e-08,29;UBERON:0001003,1.44e-07,15;UBERON:0007376,1.44e-07,15;UBERON:0007383,1.44e-07,15;UBERON:0000161,7.99e-07,36|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,1.63647672354501,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20725313949488,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.62403003920662,12.4306774867156,1.55952606966625,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72279661398852,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261177619741208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.313808538937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C406 | |||
|description=CAGE_peak_at_chr10:106205489..106205498,+ | |||
|id=chr10:106205489..106205498,+ | |||
|ontology_enrichment_celltype=CL:0002166!1.22e-19!3;CL:0002621!2.25e-19!3;CL:0002159!1.29e-16!13;CL:0002077!3.64e-08!33;CL:0000066!1.16e-07!254;CL:0000362!2.45e-07!8;CL:0000319!2.52e-07!1;CL:0002327!9.11e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002166;8.85e-75;3!CL:0002621;6.61e-74;3!CL:0002159;2.68e-44;14!CL:0002077;3.46e-16;34!CL:0000317;1.14e-13;2!CL:1000448;1.14e-13;2!CL:0002308;1.14e-13;2!CL:0002140;1.14e-13;2!CL:0000362;5.83e-12;9!CL:0002251;8.42e-12;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,7.81e-75,3;CL:0002621,9.64e-74,3;CL:0002159,2.34e-44,14;CL:0002077,1.60e-18,34;CL:0000317,8.28e-14,2;CL:1000448,8.28e-14,2;CL:0002308,8.28e-14,2;CL:0002140,8.28e-14,2;CL:0000362,5.52e-12,9;CL:0002251,8.90e-12,20;CL:0000221,1.20e-08,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3030!2.52e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!2.25e-19!3;UBERON:0001708!7.27e-15!4;UBERON:0001704!7.27e-15!4;UBERON:0002090!4.57e-10!6;UBERON:0001828!1.48e-07!8;UBERON:0001911!9.11e-07!4;UBERON:0005333!9.11e-07!4;UBERON:0008425!9.11e-07!4;UBERON:0005311!9.11e-07!4;UBERON:0002119!9.65e-07!4;UBERON:0004531!9.65e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;6.61e-74;3!UBERON:0001708;2.37e-56;4!UBERON:0008895;2.37e-56;4!UBERON:0011159;2.76e-45;5!UBERON:0003929;3.02e-32;7!UBERON:0003350;2.49e-28;8!UBERON:0001828;2.49e-28;8!UBERON:0011137;4.49e-21;11!UBERON:0010323;4.49e-21;11!UBERON:0010371;9.01e-21;31!UBERON:0000486;3.61e-19;12!UBERON:0003729;9.34e-18;13!UBERON:0000075;9.86e-15;16!UBERON:0002419;1.14e-13;2!UBERON:0007771;1.14e-13;2!UBERON:0003297;1.14e-13;2!UBERON:0001821;1.14e-13;2!UBERON:0003487;1.14e-13;2!UBERON:0001820;1.14e-13;2!UBERON:0000161;2.19e-12;19!UBERON:0000166;2.19e-12;19!UBERON:0000344;8.42e-12;20!UBERON:0004807;8.62e-11;22!UBERON:0004765;2.48e-09;26!UBERON:0000165;1.28e-08;28!UBERON:0001003;1.49e-07;15!UBERON:0007376;1.49e-07;15!UBERON:0001434;5.50e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,9.64e-74,3;UBERON:0001708,2.15e-56,4;UBERON:0008895,2.15e-56,4;UBERON:0011159,2.56e-45,5;UBERON:0010188,6.30e-38,6;UBERON:0002539,6.30e-38,6;UBERON:0008816,6.30e-38,6;UBERON:0003350,2.87e-28,8;UBERON:0001828,2.87e-28,8;UBERON:0010323,4.34e-21,11;UBERON:0003729,1.02e-17,13;UBERON:0011137,9.68e-17,14;UBERON:0000033,4.82e-16,56;UBERON:0003102,5.28e-16,99;UBERON:0000075,9.63e-15,16;UBERON:0000153,1.66e-14,62;UBERON:0007811,1.66e-14,62;UBERON:0002419,8.28e-14,2;UBERON:0007771,8.28e-14,2;UBERON:0003297,8.28e-14,2;UBERON:0001821,8.28e-14,2;UBERON:0003487,8.28e-14,2;UBERON:0001820,8.28e-14,2;UBERON:0005089,8.28e-14,2;UBERON:0005088,8.28e-14,2;UBERON:0008814,3.47e-13,18;UBERON:0000344,8.90e-12,20;UBERON:0000166,9.07e-11,22;UBERON:0004807,1.33e-08,28;UBERON:0000165,2.51e-08,29;UBERON:0000930,2.51e-08,29;UBERON:0001003,1.44e-07,15;UBERON:0007376,1.44e-07,15;UBERON:0007383,1.44e-07,15;UBERON:0000161,7.99e-07,36 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,1.63647672354501,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20725313949488,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.62403003920662,12.4306774867156,1.55952606966625,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72279661398852,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261177619741208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.313808538937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0.308801447160972,0,0,0.38582807654183,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr10:106205489..106205498,+ | |||
}} |
Revision as of 11:37, 10 September 2013
Short description: | p@chr10:106205489..106205498, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:106205489..106205498, + |
Coexpression cluster: | C406_Mallassezderived_Mesothelial_mesenchymal_chorionic_Gingival_Placental_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 7.81e-75 | 3 |
gingival epithelial cell | 9.64e-74 | 3 |
general ecto-epithelial cell | 2.34e-44 | 14 |
ecto-epithelial cell | 1.60e-18 | 34 |
sebum secreting cell | 8.28e-14 | 2 |
epithelial cell of sweat gland | 8.28e-14 | 2 |
epithelial cell of skin gland | 8.28e-14 | 2 |
acinar cell of sebaceous gland | 8.28e-14 | 2 |
epidermal cell | 5.52e-12 | 9 |
epithelial cell of alimentary canal | 8.90e-12 | 20 |
ectodermal cell | 1.20e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 9.64e-74 | 3 |
jaw skeleton | 2.15e-56 | 4 |
splanchnocranium | 2.15e-56 | 4 |
primary subdivision of cranial skeletal system | 2.56e-45 | 5 |
protuberance | 6.30e-38 | 6 |
pharyngeal arch | 6.30e-38 | 6 |
embryonic head | 6.30e-38 | 6 |
epithelium of mucosa | 2.87e-28 | 8 |
gingiva | 2.87e-28 | 8 |
cranial skeletal system | 4.34e-21 | 11 |
mouth mucosa | 1.02e-17 | 13 |
axial skeletal system | 9.68e-17 | 14 |
head | 4.82e-16 | 56 |
surface structure | 5.28e-16 | 99 |
subdivision of skeletal system | 9.63e-15 | 16 |
anterior region of body | 1.66e-14 | 62 |
craniocervical region | 1.66e-14 | 62 |
skin gland | 8.28e-14 | 2 |
epidermis gland | 8.28e-14 | 2 |
gland of integumental system | 8.28e-14 | 2 |
sebaceous gland | 8.28e-14 | 2 |
skin sebaceous gland | 8.28e-14 | 2 |
sweat gland | 8.28e-14 | 2 |
sweat gland placode | 8.28e-14 | 2 |
sebaceous gland placode | 8.28e-14 | 2 |
pharyngeal arch system | 3.47e-13 | 18 |
mucosa | 8.90e-12 | 20 |
oral opening | 9.07e-11 | 22 |
respiratory system epithelium | 1.33e-08 | 28 |
mouth | 2.51e-08 | 29 |
stomodeum | 2.51e-08 | 29 |
skin epidermis | 1.44e-07 | 15 |
outer epithelium | 1.44e-07 | 15 |
enveloping layer of ectoderm | 1.44e-07 | 15 |
orifice | 7.99e-07 | 36 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.