FFCP PHASE1:Hg19::chr10:17243628..17243690,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1787|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2977|TSSclassifier=S|UniProt=Q7Z3E4,O14717,B0YJ06,B7Z8H2|association_with_transcript=0bp_to_ENST00000351358,ENST00000354631,ENST00000358282,ENST00000377766,ENST00000377799,ENST00000412821,ENST00000488990,uc001iop.2,uc001ioq.2,uc001ior.2,uc001ios.2,uc009xjt.2,uc010qcd.1_5end|description=CAGE_peak_1_at_TRDMT1_5end|id=chr10:17243628..17243690,-|ontology_enrichment_celltype=CL:0000542!4.14e-09!53;CL:0000051!4.14e-09!53;CL:0000838!6.30e-09!52;CL:0000037!3.46e-08!172;CL:0000566!3.46e-08!172;CL:0000791!2.25e-07!18;CL:0000789!2.25e-07!18;CL:0002420!2.25e-07!18;CL:0002419!2.25e-07!18;CL:0000790!2.25e-07!18;CL:0002087!3.05e-07!119;CL:0000738!6.54e-07!140|ontology_enrichment_celltype_v019=CL:0000791;1.09e-07;18!CL:0000789;1.09e-07;18!CL:0002419;1.09e-07;18!CL:0000084;5.19e-07;25|ontology_enrichment_celltype_v019_2=CL:0000542,4.13e-09,53;CL:0000051,4.13e-09,53;CL:0000838,6.28e-09,52;CL:0000037,1.23e-08,168;CL:0002087,9.29e-08,115;CL:0000791,2.25e-07,18;CL:0000789,2.25e-07,18;CL:0002420,2.25e-07,18;CL:0002419,2.25e-07,18;CL:0000790,2.25e-07,18;CL:0000738,2.30e-07,136;CL:0002031,8.35e-07,120|ontology_enrichment_development_v019=CL:0000790;1.09e-07;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.70e-08!94;UBERON:0001016!3.70e-08!94;UBERON:0005743!2.65e-07!86;UBERON:0001017!2.87e-07!82;UBERON:0001049!7.82e-07!57;UBERON:0005068!7.82e-07!57;UBERON:0006241!7.82e-07!57;UBERON:0007135!7.82e-07!57|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.24e-08,89;UBERON:0001017,4.42e-07,81|phase1_expression=2.72517568905835,3.42560838225573,2.39622486963151,1.0007329835313,4.02264984984559,2.61701557230111,0,1.89515962028049,1.56711376919903,2.7030733015166,2.09340350391728,1.96597234917155,1.31883489114227,3.21792517696121,3.97676850873499,4.03395087871065,1.80808358407193,0.730310090387373,1.46379839637152,3.32426856807327,2.24400760368678,1.88072832886853,9.15955158819382,9.58120975510189,11.9265507615063,2.59805579543034,3.85872770414745,2.83358812729245,1.57345710739562,6.90892916574983,4.02521920621798,0.919421224478927,1.50602959389125,1.84877005083394,4.26069603191659,4.26507697462265,10.2760153767197,3.87796785972314,6.81851121398482,7.37836960433896,2.91090116511902,3.56283032620878,5.92423805558629,7.99690313287606,6.04601509902095,5.33684934613196,5.81072592264212,4.52284676824008,3.09706370895104,4.60307827715441,4.09857130446561,2.83778675866302,5.86067657252252,2.5819387343353,1.35426486594342,6.21199720490596,3.82068610080984,4.94391665779186,5.50951006267625,2.24650318953266,5.75403413219137,4.28806690242731,5.98390972864896,3.40979800426155,7.2552309657146,3.40431134814684,3.11411124497787,4.27122730936464,3.12889751052121,4.56096573880745,4.84319602106695,3.68277635987565,6.32924774881769,5.0701268714866,2.97646019951061,3.35453832813401,4.04383072127382,3.15371474967163,4.17886525412408,1.71007646244749,3.18266683518544,2.19196984517561,12.3197371122926,6.55366333514558,3.55803701545422,8.96133467389665,9.6095036888643,10.9202963591352,5.2883589822789,9.54053754535364,8.53819453664173,5.87237189370939,9.55683070313072,18.5039860010636,6.72610275577843,7.37475437370216,28.1294971262781,13.3623659334716,15.0089094269642,5.01559486172034,9.12582346574053,15.1503297835115,5.84480185223734,4.01077644786625,4.12448270464772,5.53834736459053,8.6657236404805,4.22701355094728,6.11278933531428,6.9063919933544,8.0141505157896,3.76744011455568,15.5700891320163,18.4603171381902,15.6803285707465,6.00539516297101,12.2630557952615,12.3705880373747,9.1087089127021,6.05274287215784,9.76625180784628,4.75226022224187,8.13105643019973,11.1348351704344,8.74515085866421,8.28720382154059,6.56902397536837,7.86266298576456,9.62784704820626,15.7858600232251,9.75227465255847,4.02420515822182,3.32442660793179,5.78302643815306,2.50668955317945,2.31754430337318,1.5905718941022,3.89307896242109,5.10488012685966,3.54767035940102,4.47957407034943,4.32230949142452,0.364295288292542,0.741568885568859,2.92092654289215,3.30846500868608,3.0580330919339,14.7864187069312,18.8758320557442,29.7166001063652,2.18638648103376,2.58070378531837,1.38856200643038,1.13061588384802,2.09749718104953,4.40188867104108,2.71693456497854,4.13466814670926,3.91342888955381,4.01664735317604,4.83395180530976,1.52054421143703,2.4406205754817,5.51494620518803,0.81014194788176,6.87607907787414,5.61323431565425,5.40535106319947,3.06633274931766,1.89853131913626,3.29763139074733,1.31780417436063,3.87780264148325,0,2.48485975847659,4.30543739659571,5.56118559415519,4.30254931123221,4.61068896857864,3.36406560085384,0,0.49333509683432,8.09148692039392,5.92726957106628,7.84617134944602,1.81628913173918,4.03323147135999,5.15507150034353,3.43376084513353,2.85235910772225,4.03511437489863,11.978318861664,9.87424960645602,15.0282363171406,6.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452,4.30093273862063,3.65102371835417,5.61197955311177,1.86494547746733,2.0486217251274,0.691259661814092,5.59295566466361,3.0766320189947,4.4310970474762,2.9637093513365,1.60374807980835,5.27350855629344,7.64431151181946,3.57937381752935,5.59456331606885,0.487671699929078,3.23714418593947,1.64260490969995,10.4383298820438,9.71421986118279,1.40363678077263,2.58636007709779,5.82708444810086,4.96962760971424,3.84791808609002,3.01925687133347,4.55327532836874,7.43102505713455,2.35158648180761,7.10930133086326,1.88541237681301,6.28187094767825,5.04978880556046,10.9890489171684,4.58803209657106,6.4848903406099,5.47892047775406,4.89711664032152,1.07132363163395,2.47026410200984,4.89472336803926,7.30336388246517,7.79839781787719,3.87016874508919,5.67977623895465,1.76777874496378,11.3451179488498,4.7612415646386,4.83593523616777,2.31087814315709,3.46101249699031,15.8969695292199,11.8006817720791,12.7965486021551,4.07955318967927,4.27547848424897,3.58390108185895,1.75495277504663,4.77405798774908,5.89521086343593,5.80418607621146,7.13687671447077,6.18378547512845,14.7599947507519,18.9891394917858,22.0365235750296,13.7922190974155,8.3377777344396,13.5418516602007,4.13661821004227,3.42233301085281,6.12903682432747,5.4508876098434,11.3104521225645,3.98876016193775,5.5498219856412,5.7921684686082,4.58108530743593,2.34640942403454,10.023798422995,10.5793006362092,5.3260541934841,6.44076139491284,3.52625341533556|short_description=p1@TRDMT1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=1787 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2977 | |||
|TSSclassifier=S | |||
|UniProt=Q7Z3E4,O14717,B0YJ06,B7Z8H2 | |||
|association_with_transcript=0bp_to_ENST00000351358,ENST00000354631,ENST00000358282,ENST00000377766,ENST00000377799,ENST00000412821,ENST00000488990,uc001iop.2,uc001ioq.2,uc001ior.2,uc001ios.2,uc009xjt.2,uc010qcd.1_5end | |||
|description=CAGE_peak_1_at_TRDMT1_5end | |||
|id=chr10:17243628..17243690,- | |||
|ontology_enrichment_celltype=CL:0000542!4.14e-09!53;CL:0000051!4.14e-09!53;CL:0000838!6.30e-09!52;CL:0000037!3.46e-08!172;CL:0000566!3.46e-08!172;CL:0000791!2.25e-07!18;CL:0000789!2.25e-07!18;CL:0002420!2.25e-07!18;CL:0002419!2.25e-07!18;CL:0000790!2.25e-07!18;CL:0002087!3.05e-07!119;CL:0000738!6.54e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.09e-07;18!CL:0000789;1.09e-07;18!CL:0002419;1.09e-07;18!CL:0000084;5.19e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.13e-09,53;CL:0000051,4.13e-09,53;CL:0000838,6.28e-09,52;CL:0000037,1.23e-08,168;CL:0002087,9.29e-08,115;CL:0000791,2.25e-07,18;CL:0000789,2.25e-07,18;CL:0002420,2.25e-07,18;CL:0002419,2.25e-07,18;CL:0000790,2.25e-07,18;CL:0000738,2.30e-07,136;CL:0002031,8.35e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;1.09e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.70e-08!94;UBERON:0001016!3.70e-08!94;UBERON:0005743!2.65e-07!86;UBERON:0001017!2.87e-07!82;UBERON:0001049!7.82e-07!57;UBERON:0005068!7.82e-07!57;UBERON:0006241!7.82e-07!57;UBERON:0007135!7.82e-07!57 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.24e-08,89;UBERON:0001017,4.42e-07,81 | |||
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| |||
|short_description=p1@TRDMT1 | |||
}} |
Revision as of 12:39, 10 September 2013
Short description: | p1@TRDMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TRDMT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000351358, ENST00000354631, ENST00000358282, ENST00000377766, ENST00000377799, ENST00000412821, ENST00000488990, uc001iop.2, uc001ioq.2, uc001ior.2, uc001ios.2, uc009xjt.2, uc010qcd.1_5end |
EntrezGene: | TRDMT1 |
HGNC: | 2977 |
UniProt: | Q7Z3E4O14717B0YJ06B7Z8H2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.13e-09 | 53 |
common lymphoid progenitor | 4.13e-09 | 53 |
lymphoid lineage restricted progenitor cell | 6.28e-09 | 52 |
hematopoietic stem cell | 1.23e-08 | 168 |
nongranular leukocyte | 9.29e-08 | 115 |
mature alpha-beta T cell | 2.25e-07 | 18 |
alpha-beta T cell | 2.25e-07 | 18 |
immature T cell | 2.25e-07 | 18 |
mature T cell | 2.25e-07 | 18 |
immature alpha-beta T cell | 2.25e-07 | 18 |
leukocyte | 2.30e-07 | 136 |
hematopoietic lineage restricted progenitor cell | 8.35e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.24e-08 | 89 |
central nervous system | 4.42e-07 | 81 |
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