FFCP PHASE1:Hg19::chr11:64612091..64612116,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55561|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29829|TSSclassifier=S|UniProt=Q6DT37|association_with_transcript=-50bp_to_ENST00000342711,NM_017525,uc001obs.3_5end|description=CAGE_peak_3_at_CDC42BPG_5end|id=chr11:64612091..64612116,-|ontology_enrichment_celltype=CL:0000066!3.09e-23!254;CL:0002076!5.03e-19!43;CL:0000223!3.55e-18!59;CL:0002251!2.92e-14!21|ontology_enrichment_celltype_v019=CL:0000349;8.31e-11;19!CL:0000575;2.91e-10;2!CL:0002537;8.83e-09;5!CL:0002541;4.15e-07;3|ontology_enrichment_celltype_v019_2=CL:0000349,6.90e-11,19;CL:0000575,1.68e-10,2;CL:0002537,4.72e-09,5;CL:0000223,3.46e-07,58;CL:0002541,3.48e-07,3;CL:0002076,4.28e-07,42|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!4.45e-19!106;DOID:0050687!1.85e-13!143;DOID:1749!5.67e-12!14;DOID:299!1.58e-08!25|ontology_enrichment_disease_v019=DOID:5093;2.35e-11;4!DOID:1612;2.35e-11;4!DOID:299;3.78e-08;25|ontology_enrichment_disease_v019_2=DOID:5093,2.59e-11,4;DOID:1612,2.59e-11,4;DOID:299,5.77e-08,25|ontology_enrichment_uberon=UBERON:0004119!2.26e-20!169;UBERON:0000925!2.26e-20!169;UBERON:0006595!2.26e-20!169;UBERON:0001007!1.71e-15!155;UBERON:0001555!1.71e-15!155;UBERON:0007026!1.71e-15!155;UBERON:0004921!1.86e-12!129;UBERON:0004185!1.86e-12!129;UBERON:0000077!2.70e-12!130;UBERON:0001004!4.42e-11!72;UBERON:0005631!5.40e-10!14;UBERON:0000158!5.40e-10!14;UBERON:0000464!8.62e-10!104;UBERON:0000466!1.67e-09!126;UBERON:0000344!1.12e-08!12;UBERON:0000161!1.28e-08!35;UBERON:0005911!1.37e-08!82;UBERON:0001041!2.03e-08!98;UBERON:0000166!3.16e-08!21;UBERON:0003729!6.65e-07!5;UBERON:0000974!8.61e-07!10|ontology_enrichment_uberon_v019=UBERON:0005631;6.68e-16;10!UBERON:0000158;6.68e-16;10!UBERON:0000478;6.01e-11;24!UBERON:0000305;1.49e-10;7!UBERON:0000974;3.47e-07;6!UBERON:0003124;4.15e-07;3!UBERON:0000920;4.15e-07;3!UBERON:0002110;7.80e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0005631,7.97e-20,14;UBERON:0000158,7.97e-20,14;UBERON:0000478,5.05e-11,24;UBERON:0003124,8.85e-11,7;UBERON:0000305,1.08e-10,7;UBERON:0004871,2.31e-09,8;UBERON:0000920,3.48e-07,3;UBERON:0002110,6.75e-07,3;UBERON:0006242,6.75e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,1.09220686065086,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0,0,0.393364276848904,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,2.5500670180478,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.545492241181669,0.286804595389004,0.487894824518382,0.397589304964456,0.580969714347592,0.414644220061482,0.756962552626885,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,1.40241773803446,0,0,0,0,0,0,0.983907508344908,0,0.219500570817251,0,0.301586917234893,0.833296006426766,0,0,0,0.115930404975077,0,0,0,0,7.11183958163348,5.15091697256924,0,0,0,0,0.503946384596579,0.141775097242386,0.268675568108545,0,0.766765358330422,0,0.088048434013226,0.207328115540772,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0.460404944679482,0,0,0,0.451199612907412,0.231046011313244,0.784349769176855,0,0,0,0,0,0,0.541892875087706,0,0.764628819135115,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0.768760269460425,2.04180339991335,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0.670302275535787,1.08890984861323,0.564862804660675,0.86101074534246,0,1.33029046061003,0.689170200620878,0,0,0,0,0,0,0,0.79312517629427,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11362469558097,0,0,0,0,0,0,0,0,0,1.90995587790152,2.67268212749375,1.53580351049616,0,0,0,0,0,0.19924798825107,0.828851746593443,0,0.102268682502155,0,0,0.539210106883961,0.179021174675609,0,0,0,0,0,0,0,1.30213880542617,0.437299999980979,0,0.910347586283997,0.762760950878299,0.472775363535873,0,0,0,0,0,0,1.43753037910592,0.886642856860642,0,0,1.67308493134324,0.384751292518985,0,0.69169171316418,0.718061155278177,0.325942115766024,2.23300811812344,0.549585560411174,1.5991043280559,0,0,0.332423363800313,0.225595660617181,0.392125068635479,0.335643173951685,0,0.158936578980379,0,0.489698424477443,0.424059214301822,0,1.99052386215701,1.06149077404007,0,0,0,0,0,0,0,0,0.782658475728359,0,0.789168805698781,1.20990716048664,0,0,0,0.311064574191741,0,0,0,0,0,0,1.04135843001079,0.979923974143776,0.261177619741208,1.04836000945218,0,0.290268993867255,0.219267951258557,0.246346371159628,1.16386819786103,0,0,0,0,0,1.36885967914362,0.0801588202515337,1.49417096317547,1.19885765749278,0.288180834308212,0,0,0,0.124252535565433,1.88555227693436,0,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0,0,0,0,0.321506296930038,0.275078873194468,0.415440338029185,0,2.32140586367385,0.121499113316049,1.0063040627978,0,0.157363764404994,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0.320362237703084,0,0,0,0,0,1.27668251554036,0,0,0,0,0.314108192500469,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0.139879507719444,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27592034051333,0.943757786781923,1.83428598521679,0.808679663052368,0,0,0,0.150420656698515,0,0.781514011233092,1.57144016688853,0,0.443568258651136,0,0,0,0,0,0,0.496211178389294,0,1.91643641459393,0.535701835878287,0,0,0.227662191351298,2.57236873471653,0,0,0,0,0.118193840883968,0.222462803784138,0.470958557103084,0,0.840816489941367,0,0,0,0.0714765441766563,0,0,0,0,0.207216164163037,0.17071847709395,1.38251932362818,2.58136415292167,0,0,0.423387050190929,2.97838929107265,0,0,1.00669888618013,0.588901401691458,0.609589624911347,0,0,0,0.485710993059139,0,0,0.118920090777569,0.22589216407792,0.109940516745429,0.301925687133347,3.47283711485751,0.218559560503957,1.41095188908457,0.245148321753905,0.471353094203252,0,0,0,0,0,0.128915775947154,0,0.357107877211315,0.705789743431384,0.401206833445841,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0.509944148709909,0.801652215796681,0.36757959813938,0,0,0,0,0,1.70587185520785,0.952257725854961,0.193766729508018,0.124149428591716,0,0.12729431655633,0.404234377916439,0.870866991587845,0,0.606168477131288,0.932388670104793,0.665320713092027,0.488419611665847,0,0,0.0898252021065869,0,0,0.406896178315738,0,0,0|short_description=p3@CDC42BPG}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=55561 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29829 | |||
|TSSclassifier=S | |||
|UniProt=Q6DT37 | |||
|association_with_transcript=-50bp_to_ENST00000342711,NM_017525,uc001obs.3_5end | |||
|description=CAGE_peak_3_at_CDC42BPG_5end | |||
|id=chr11:64612091..64612116,- | |||
|ontology_enrichment_celltype=CL:0000066!3.09e-23!254;CL:0002076!5.03e-19!43;CL:0000223!3.55e-18!59;CL:0002251!2.92e-14!21 | |||
|ontology_enrichment_celltype_v019=CL:0000349;8.31e-11;19!CL:0000575;2.91e-10;2!CL:0002537;8.83e-09;5!CL:0002541;4.15e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,6.90e-11,19;CL:0000575,1.68e-10,2;CL:0002537,4.72e-09,5;CL:0000223,3.46e-07,58;CL:0002541,3.48e-07,3;CL:0002076,4.28e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!4.45e-19!106;DOID:0050687!1.85e-13!143;DOID:1749!5.67e-12!14;DOID:299!1.58e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:5093;2.35e-11;4!DOID:1612;2.35e-11;4!DOID:299;3.78e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,2.59e-11,4;DOID:1612,2.59e-11,4;DOID:299,5.77e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.26e-20!169;UBERON:0000925!2.26e-20!169;UBERON:0006595!2.26e-20!169;UBERON:0001007!1.71e-15!155;UBERON:0001555!1.71e-15!155;UBERON:0007026!1.71e-15!155;UBERON:0004921!1.86e-12!129;UBERON:0004185!1.86e-12!129;UBERON:0000077!2.70e-12!130;UBERON:0001004!4.42e-11!72;UBERON:0005631!5.40e-10!14;UBERON:0000158!5.40e-10!14;UBERON:0000464!8.62e-10!104;UBERON:0000466!1.67e-09!126;UBERON:0000344!1.12e-08!12;UBERON:0000161!1.28e-08!35;UBERON:0005911!1.37e-08!82;UBERON:0001041!2.03e-08!98;UBERON:0000166!3.16e-08!21;UBERON:0003729!6.65e-07!5;UBERON:0000974!8.61e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;6.68e-16;10!UBERON:0000158;6.68e-16;10!UBERON:0000478;6.01e-11;24!UBERON:0000305;1.49e-10;7!UBERON:0000974;3.47e-07;6!UBERON:0003124;4.15e-07;3!UBERON:0000920;4.15e-07;3!UBERON:0002110;7.80e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,7.97e-20,14;UBERON:0000158,7.97e-20,14;UBERON:0000478,5.05e-11,24;UBERON:0003124,8.85e-11,7;UBERON:0000305,1.08e-10,7;UBERON:0004871,2.31e-09,8;UBERON:0000920,3.48e-07,3;UBERON:0002110,6.75e-07,3;UBERON:0006242,6.75e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,1.09220686065086,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0,0,0.393364276848904,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,2.5500670180478,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.545492241181669,0.286804595389004,0.487894824518382,0.397589304964456,0.580969714347592,0.414644220061482,0.756962552626885,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,1.40241773803446,0,0,0,0,0,0,0.983907508344908,0,0.219500570817251,0,0.301586917234893,0.833296006426766,0,0,0,0.115930404975077,0,0,0,0,7.11183958163348,5.15091697256924,0,0,0,0,0.503946384596579,0.141775097242386,0.268675568108545,0,0.766765358330422,0,0.088048434013226,0.207328115540772,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0.460404944679482,0,0,0,0.451199612907412,0.231046011313244,0.784349769176855,0,0,0,0,0,0,0.541892875087706,0,0.764628819135115,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0.768760269460425,2.04180339991335,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0.670302275535787,1.08890984861323,0.564862804660675,0.86101074534246,0,1.33029046061003,0.689170200620878,0,0,0,0,0,0,0,0.79312517629427,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11362469558097,0,0,0,0,0,0,0,0,0,1.90995587790152,2.67268212749375,1.53580351049616,0,0,0,0,0,0.19924798825107,0.828851746593443,0,0.102268682502155,0,0,0.539210106883961,0.179021174675609,0,0,0,0,0,0,0,1.30213880542617,0.437299999980979,0,0.910347586283997,0.762760950878299,0.472775363535873,0,0,0,0,0,0,1.43753037910592,0.886642856860642,0,0,1.67308493134324,0.384751292518985,0,0.69169171316418,0.718061155278177,0.325942115766024,2.23300811812344,0.549585560411174,1.5991043280559,0,0,0.332423363800313,0.225595660617181,0.392125068635479,0.335643173951685,0,0.158936578980379,0,0.489698424477443,0.424059214301822,0,1.99052386215701,1.06149077404007,0,0,0,0,0,0,0,0,0.782658475728359,0,0.789168805698781,1.20990716048664,0,0,0,0.311064574191741,0,0,0,0,0,0,1.04135843001079,0.979923974143776,0.261177619741208,1.04836000945218,0,0.290268993867255,0.219267951258557,0.246346371159628,1.16386819786103,0,0,0,0,0,1.36885967914362,0.0801588202515337,1.49417096317547,1.19885765749278,0.288180834308212,0,0,0,0.124252535565433,1.88555227693436,0,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0,0,0,0,0.321506296930038,0.275078873194468,0.415440338029185,0,2.32140586367385,0.121499113316049,1.0063040627978,0,0.157363764404994,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0.320362237703084,0,0,0,0,0,1.27668251554036,0,0,0,0,0.314108192500469,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0.139879507719444,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27592034051333,0.943757786781923,1.83428598521679,0.808679663052368,0,0,0,0.150420656698515,0,0.781514011233092,1.57144016688853,0,0.443568258651136,0,0,0,0,0,0,0.496211178389294,0,1.91643641459393,0.535701835878287,0,0,0.227662191351298,2.57236873471653,0,0,0,0,0.118193840883968,0.222462803784138,0.470958557103084,0,0.840816489941367,0,0,0,0.0714765441766563,0,0,0,0,0.207216164163037,0.17071847709395,1.38251932362818,2.58136415292167,0,0,0.423387050190929,2.97838929107265,0,0,1.00669888618013,0.588901401691458,0.609589624911347,0,0,0,0.485710993059139,0,0,0.118920090777569,0.22589216407792,0.109940516745429,0.301925687133347,3.47283711485751,0.218559560503957,1.41095188908457,0.245148321753905,0.471353094203252,0,0,0,0,0,0.128915775947154,0,0.357107877211315,0.705789743431384,0.401206833445841,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0.509944148709909,0.801652215796681,0.36757959813938,0,0,0,0,0,1.70587185520785,0.952257725854961,0.193766729508018,0.124149428591716,0,0.12729431655633,0.404234377916439,0.870866991587845,0,0.606168477131288,0.932388670104793,0.665320713092027,0.488419611665847,0,0,0.0898252021065869,0,0,0.406896178315738,0,0,0 | |||
|short_description=p3@CDC42BPG | |||
}} |
Revision as of 18:49, 10 September 2013
Short description: | p3@CDC42BPG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CDC42BPG_5end |
Coexpression cluster: | NA |
Association with transcript: | -50bp_to_ENST00000342711, NM_017525, uc001obs.3_5end |
EntrezGene: | CDC42BPG |
HGNC: | 29829 |
UniProt: | Q6DT37 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 6.90e-11 | 19 |
corneal epithelial cell | 1.68e-10 | 2 |
amnion mesenchymal stem cell | 4.72e-09 | 5 |
endodermal cell | 3.46e-07 | 58 |
chorionic membrane mesenchymal stem cell | 3.48e-07 | 3 |
endo-epithelial cell | 4.28e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 7.97e-20 | 14 |
membranous layer | 7.97e-20 | 14 |
extraembryonic structure | 5.05e-11 | 24 |
chorion | 8.85e-11 | 7 |
amnion | 1.08e-10 | 7 |
somatic layer of lateral plate mesoderm | 2.31e-09 | 8 |
egg chorion | 3.48e-07 | 3 |
gallbladder | 6.75e-07 | 3 |
gall bladder primordium | 6.75e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 2.59e-11 | 4 |
breast cancer | 2.59e-11 | 4 |
adenocarcinoma | 5.77e-08 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.