FFCP PHASE1:Hg19::chr2:177016535..177016548,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3233|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5138|TSSclassifier=S|UniProt=|association_with_transcript=-475bp_to_ENST00000465649_5end|description=CAGE_peak_3_at_HOXD4_5end|id=chr2:177016535..177016548,+|ontology_enrichment_celltype=CL:1000507!7.02e-24!12;CL:1000494!7.02e-24!12;CL:1000449!1.57e-20!16;CL:1000497!6.58e-18!18;CL:0002518!6.58e-18!18;CL:0002681!2.16e-14!13;CL:0002584!2.16e-14!13;CL:0000239!8.09e-09!3;CL:1000615!8.09e-09!3;CL:0002306!8.09e-09!3;CL:0000650!3.39e-08!3;CL:1000618!3.39e-08!3;CL:1001318!3.39e-08!3;CL:0002173!3.39e-08!3;CL:1000500!3.39e-08!3;CL:0002620!5.00e-08!23|ontology_enrichment_celltype_v019=CL:1000507;1.75e-15;10!CL:1000494;1.75e-15;10!CL:0000239;7.18e-14;3!CL:1000615;7.18e-14;3!CL:0002306;7.18e-14;3!CL:0000319;2.93e-11;1!CL:1001319;9.49e-11;1!CL:1000600;9.49e-11;1!CL:1000449;2.14e-10;15!CL:1000497;3.41e-09;17!CL:0002518;3.41e-09;17!CL:0002681;9.63e-08;12!CL:0002584;9.63e-08;12|ontology_enrichment_celltype_v019_2=CL:1000507,1.78e-15,10;CL:1000494,1.78e-15,10;CL:0000239,6.52e-14,3;CL:1000615,6.52e-14,3;CL:0002306,6.52e-14,3;CL:0000319,2.79e-11,1;CL:1001319,1.33e-10,1;CL:1000600,1.33e-10,1;CL:1000449,2.17e-10,15;CL:1000497,3.45e-09,17;CL:0002518,3.45e-09,17;CL:0002681,1.08e-07,12;CL:0002584,1.08e-07,12|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3030;2.93e-11;1|ontology_enrichment_disease_v019_2=DOID:3030,2.79e-11,1;DOID:0050687,1.13e-07,143|ontology_enrichment_uberon=UBERON:0000080!1.11e-24!18;UBERON:0002120!1.11e-24!18;UBERON:0004875!1.11e-24!18;UBERON:0005721!1.11e-24!18;UBERON:0005754!1.11e-24!18;UBERON:0007297!1.11e-24!18;UBERON:0009773!7.02e-24!12;UBERON:0001231!7.02e-24!12;UBERON:0004810!7.02e-24!12;UBERON:0006555!1.09e-22!17;UBERON:0005103!1.09e-22!17;UBERON:0000083!1.09e-22!17;UBERON:0009201!1.09e-22!17;UBERON:0004819!1.09e-22!17;UBERON:0006553!1.09e-22!17;UBERON:0003074!1.09e-22!17;UBERON:0003060!1.09e-22!17;UBERON:0004876!7.82e-22!20;UBERON:0000489!4.14e-21!32;UBERON:0003887!1.30e-20!21;UBERON:0004211!1.57e-20!16;UBERON:0001285!1.57e-20!16;UBERON:0007684!1.57e-20!16;UBERON:0003220!1.57e-20!16;UBERON:0004208!1.57e-20!16;UBERON:0002113!5.30e-20!27;UBERON:0003918!5.30e-20!27;UBERON:0005095!5.30e-20!27;UBERON:0007687!5.30e-20!27;UBERON:0000058!1.43e-18!26;UBERON:0001225!2.16e-14!13;UBERON:0008987!2.16e-14!13;UBERON:0006554!2.84e-12!44;UBERON:0001008!6.67e-12!45;UBERON:0003064!7.28e-12!37;UBERON:0001851!2.47e-11!16;UBERON:0000353!1.48e-10!17;UBERON:0003103!1.71e-09!69;UBERON:0006853!8.09e-09!3;UBERON:0007685!8.09e-09!3;UBERON:0004134!8.09e-09!3;UBERON:0005172!8.13e-09!55;UBERON:0005173!8.13e-09!55;UBERON:0003886!1.47e-08!63;UBERON:0006947!1.73e-08!3;UBERON:0004054!1.73e-08!3;UBERON:0002199!2.30e-08!45;UBERON:0002416!2.30e-08!45;UBERON:0002097!2.56e-08!40;UBERON:0003567!3.39e-08!3;UBERON:0003838!3.39e-08!3;UBERON:0005169!3.39e-08!3;UBERON:0002321!3.39e-08!3;UBERON:0005215!3.39e-08!3;UBERON:0002303!3.39e-08!3;UBERON:0002319!3.39e-08!3;UBERON:0002553!3.47e-08!70;UBERON:0002417!1.50e-07!61;UBERON:0000916!1.50e-07!61|ontology_enrichment_uberon_v019=UBERON:0004211;1.75e-15;10!UBERON:0009773;1.75e-15;10!UBERON:0001231;1.75e-15;10!UBERON:0004810;1.75e-15;10!UBERON:0006853;7.18e-14;3!UBERON:0007685;7.18e-14;3!UBERON:0004134;7.18e-14;3!UBERON:0001000;9.49e-11;1!UBERON:0004645;9.49e-11;1!UBERON:0005352;9.49e-11;1!UBERON:0001256;9.49e-11;1!UBERON:0001259;9.49e-11;1!UBERON:0006555;2.14e-10;15!UBERON:0004819;2.14e-10;15!UBERON:0001285;2.14e-10;15!UBERON:0007684;2.14e-10;15!UBERON:0000489;4.44e-08;29!UBERON:0006554;8.36e-08;30!UBERON:0001008;8.36e-08;30!UBERON:0001225;9.63e-08;12!UBERON:0008987;9.63e-08;12!UBERON:0005910;2.37e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.78e-15,10;UBERON:0006853,6.52e-14,3;UBERON:0007685,6.52e-14,3;UBERON:0004134,6.52e-14,3;UBERON:0001000,1.10e-10,1;UBERON:0005352,1.10e-10,1;UBERON:0004645,1.33e-10,1;UBERON:0001256,1.33e-10,1;UBERON:0001259,1.33e-10,1;UBERON:0004211,2.17e-10,15;UBERON:0009773,2.17e-10,15;UBERON:0001231,2.17e-10,15;UBERON:0001285,2.17e-10,15;UBERON:0007684,2.17e-10,15;UBERON:0004208,2.17e-10,15;UBERON:0006555,9.43e-10,16;UBERON:0004819,9.43e-10,16;UBERON:0001225,1.08e-07,12;UBERON:0008987,1.08e-07,12;UBERON:0000489,1.60e-07,31;UBERON:0005910,2.69e-07,6|phase1_expression=0,0,0,0,0,0,2.53299878168311,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0.149448680551801,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427114777637135,0.211931901159562,0,0.618315175430633,0,0.18611685633159,0,0,0,0.184099797284599,0,0.355009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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3233 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5138 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-475bp_to_ENST00000465649_5end | |||
|description=CAGE_peak_3_at_HOXD4_5end | |||
|id=chr2:177016535..177016548,+ | |||
|ontology_enrichment_celltype=CL:1000507!7.02e-24!12;CL:1000494!7.02e-24!12;CL:1000449!1.57e-20!16;CL:1000497!6.58e-18!18;CL:0002518!6.58e-18!18;CL:0002681!2.16e-14!13;CL:0002584!2.16e-14!13;CL:0000239!8.09e-09!3;CL:1000615!8.09e-09!3;CL:0002306!8.09e-09!3;CL:0000650!3.39e-08!3;CL:1000618!3.39e-08!3;CL:1001318!3.39e-08!3;CL:0002173!3.39e-08!3;CL:1000500!3.39e-08!3;CL:0002620!5.00e-08!23 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.75e-15;10!CL:1000494;1.75e-15;10!CL:0000239;7.18e-14;3!CL:1000615;7.18e-14;3!CL:0002306;7.18e-14;3!CL:0000319;2.93e-11;1!CL:1001319;9.49e-11;1!CL:1000600;9.49e-11;1!CL:1000449;2.14e-10;15!CL:1000497;3.41e-09;17!CL:0002518;3.41e-09;17!CL:0002681;9.63e-08;12!CL:0002584;9.63e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.78e-15,10;CL:1000494,1.78e-15,10;CL:0000239,6.52e-14,3;CL:1000615,6.52e-14,3;CL:0002306,6.52e-14,3;CL:0000319,2.79e-11,1;CL:1001319,1.33e-10,1;CL:1000600,1.33e-10,1;CL:1000449,2.17e-10,15;CL:1000497,3.45e-09,17;CL:0002518,3.45e-09,17;CL:0002681,1.08e-07,12;CL:0002584,1.08e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3030;2.93e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,2.79e-11,1;DOID:0050687,1.13e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000080!1.11e-24!18;UBERON:0002120!1.11e-24!18;UBERON:0004875!1.11e-24!18;UBERON:0005721!1.11e-24!18;UBERON:0005754!1.11e-24!18;UBERON:0007297!1.11e-24!18;UBERON:0009773!7.02e-24!12;UBERON:0001231!7.02e-24!12;UBERON:0004810!7.02e-24!12;UBERON:0006555!1.09e-22!17;UBERON:0005103!1.09e-22!17;UBERON:0000083!1.09e-22!17;UBERON:0009201!1.09e-22!17;UBERON:0004819!1.09e-22!17;UBERON:0006553!1.09e-22!17;UBERON:0003074!1.09e-22!17;UBERON:0003060!1.09e-22!17;UBERON:0004876!7.82e-22!20;UBERON:0000489!4.14e-21!32;UBERON:0003887!1.30e-20!21;UBERON:0004211!1.57e-20!16;UBERON:0001285!1.57e-20!16;UBERON:0007684!1.57e-20!16;UBERON:0003220!1.57e-20!16;UBERON:0004208!1.57e-20!16;UBERON:0002113!5.30e-20!27;UBERON:0003918!5.30e-20!27;UBERON:0005095!5.30e-20!27;UBERON:0007687!5.30e-20!27;UBERON:0000058!1.43e-18!26;UBERON:0001225!2.16e-14!13;UBERON:0008987!2.16e-14!13;UBERON:0006554!2.84e-12!44;UBERON:0001008!6.67e-12!45;UBERON:0003064!7.28e-12!37;UBERON:0001851!2.47e-11!16;UBERON:0000353!1.48e-10!17;UBERON:0003103!1.71e-09!69;UBERON:0006853!8.09e-09!3;UBERON:0007685!8.09e-09!3;UBERON:0004134!8.09e-09!3;UBERON:0005172!8.13e-09!55;UBERON:0005173!8.13e-09!55;UBERON:0003886!1.47e-08!63;UBERON:0006947!1.73e-08!3;UBERON:0004054!1.73e-08!3;UBERON:0002199!2.30e-08!45;UBERON:0002416!2.30e-08!45;UBERON:0002097!2.56e-08!40;UBERON:0003567!3.39e-08!3;UBERON:0003838!3.39e-08!3;UBERON:0005169!3.39e-08!3;UBERON:0002321!3.39e-08!3;UBERON:0005215!3.39e-08!3;UBERON:0002303!3.39e-08!3;UBERON:0002319!3.39e-08!3;UBERON:0002553!3.47e-08!70;UBERON:0002417!1.50e-07!61;UBERON:0000916!1.50e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.75e-15;10!UBERON:0009773;1.75e-15;10!UBERON:0001231;1.75e-15;10!UBERON:0004810;1.75e-15;10!UBERON:0006853;7.18e-14;3!UBERON:0007685;7.18e-14;3!UBERON:0004134;7.18e-14;3!UBERON:0001000;9.49e-11;1!UBERON:0004645;9.49e-11;1!UBERON:0005352;9.49e-11;1!UBERON:0001256;9.49e-11;1!UBERON:0001259;9.49e-11;1!UBERON:0006555;2.14e-10;15!UBERON:0004819;2.14e-10;15!UBERON:0001285;2.14e-10;15!UBERON:0007684;2.14e-10;15!UBERON:0000489;4.44e-08;29!UBERON:0006554;8.36e-08;30!UBERON:0001008;8.36e-08;30!UBERON:0001225;9.63e-08;12!UBERON:0008987;9.63e-08;12!UBERON:0005910;2.37e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.78e-15,10;UBERON:0006853,6.52e-14,3;UBERON:0007685,6.52e-14,3;UBERON:0004134,6.52e-14,3;UBERON:0001000,1.10e-10,1;UBERON:0005352,1.10e-10,1;UBERON:0004645,1.33e-10,1;UBERON:0001256,1.33e-10,1;UBERON:0001259,1.33e-10,1;UBERON:0004211,2.17e-10,15;UBERON:0009773,2.17e-10,15;UBERON:0001231,2.17e-10,15;UBERON:0001285,2.17e-10,15;UBERON:0007684,2.17e-10,15;UBERON:0004208,2.17e-10,15;UBERON:0006555,9.43e-10,16;UBERON:0004819,9.43e-10,16;UBERON:0001225,1.08e-07,12;UBERON:0008987,1.08e-07,12;UBERON:0000489,1.60e-07,31;UBERON:0005910,2.69e-07,6 | |||
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|short_description=p3@HOXD4 | |||
}} |
Revision as of 14:51, 12 September 2013
Short description: | p3@HOXD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_HOXD4_5end |
Coexpression cluster: | NA |
Association with transcript: | -475bp_to_ENST00000465649_5end |
EntrezGene: | HOXD4 |
HGNC: | 5138 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.78e-15 | 10 |
nephron tubule epithelial cell | 1.78e-15 | 10 |
brush border epithelial cell | 6.52e-14 | 3 |
kidney cortex tubule cell | 6.52e-14 | 3 |
epithelial cell of proximal tubule | 6.52e-14 | 3 |
mucus secreting cell | 2.79e-11 | 1 |
bladder cell | 1.33e-10 | 1 |
lower urinary tract cell | 1.33e-10 | 1 |
epithelial cell of nephron | 2.17e-10 | 15 |
kidney cell | 3.45e-09 | 17 |
kidney epithelial cell | 3.45e-09 | 17 |
kidney cortical cell | 1.08e-07 | 12 |
renal cortical epithelial cell | 1.08e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 1.78e-15 | 10 |
renal cortex tubule | 6.52e-14 | 3 |
region of nephron tubule | 6.52e-14 | 3 |
proximal tubule | 6.52e-14 | 3 |
vas deferens | 1.10e-10 | 1 |
spermatic cord | 1.10e-10 | 1 |
urinary bladder urothelium | 1.33e-10 | 1 |
wall of urinary bladder | 1.33e-10 | 1 |
mucosa of urinary bladder | 1.33e-10 | 1 |
nephron epithelium | 2.17e-10 | 15 |
renal tubule | 2.17e-10 | 15 |
nephron tubule | 2.17e-10 | 15 |
nephron | 2.17e-10 | 15 |
uriniferous tubule | 2.17e-10 | 15 |
nephrogenic mesenchyme | 2.17e-10 | 15 |
excretory tube | 9.43e-10 | 16 |
kidney epithelium | 9.43e-10 | 16 |
cortex of kidney | 1.08e-07 | 12 |
renal parenchyma | 1.08e-07 | 12 |
cavitated compound organ | 1.60e-07 | 31 |
transitional epithelium | 2.69e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 2.79e-11 | 1 |
cell type cancer | 1.13e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.