FFCP PHASE1:Hg19::chr4:113571650..113571659,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C49|description=CAGE_peak_at_chr4:113571650..113571659,+|id=chr4:113571650..113571659,+|ontology_enrichment_celltype=CL:0002322!9.37e-35!5;CL:0000039!7.53e-16!7;CL:0000586!7.53e-16!7;CL:0000148!4.99e-11!10;CL:0000541!4.99e-11!10;CL:0000540!5.11e-11!6;CL:0000031!5.11e-11!6;CL:0000404!5.11e-11!6;CL:0000047!2.23e-08!8;CL:0000710!3.10e-08!20;CL:0000147!6.56e-08!14;CL:0000946!9.29e-08!1;CL:0000786!9.29e-08!1;CL:0000980!9.29e-08!1;CL:0000133!1.56e-07!59|ontology_enrichment_celltype_v019=CL:0002322;2.16e-63;5!CL:0002321;1.58e-21;15!CL:0000540;2.66e-14;6!CL:0000404;2.66e-14;6!CL:0000039;2.81e-12;7!CL:0000586;2.81e-12;7!CL:0000148;7.07e-09;10|ontology_enrichment_celltype_v019_2=CL:0002322,9.68e-64,5;CL:0000540,3.25e-14,6;CL:0000031,3.25e-14,6;CL:0000404,3.25e-14,6;CL:0000039,3.15e-12,7;CL:0000586,3.15e-12,7;CL:0000047,6.61e-11,8;CL:0000148,6.54e-09,10;CL:0000541,6.54e-09,10|ontology_enrichment_development_v019=CL:0000031;2.66e-14;6!UBERON:0009117;7.07e-09;10!UBERON:0005564;7.07e-09;10|ontology_enrichment_disease=DOID:3095!1.49e-18!22;DOID:2994!1.49e-18!22;DOID:2355!1.21e-07!1|ontology_enrichment_disease_v019=DOID:3095;9.81e-09;22!DOID:2994;9.81e-09;22|ontology_enrichment_disease_v019_2=DOID:3095,9.43e-09,22;DOID:2994,9.43e-09,22|ontology_enrichment_uberon=UBERON:0003135!3.06e-15!11;UBERON:0000473!6.85e-14!8;UBERON:0000991!5.99e-08!21;UBERON:0009196!5.99e-08!21;UBERON:0009117!5.99e-08!21;UBERON:0005564!5.99e-08!21;UBERON:0001301!7.59e-08!1;UBERON:0001282!9.94e-08!1;UBERON:0009842!9.94e-08!1;UBERON:0003704!9.94e-08!1;UBERON:0001171!9.94e-08!1;UBERON:0001172!9.94e-08!1;UBERON:0004176!1.41e-07!22;UBERON:0003101!1.63e-07!22;UBERON:0000079!1.63e-07!22|ontology_enrichment_uberon_v019=UBERON:0000473;7.29e-11;8!UBERON:0000922;1.05e-08;49!UBERON:0003135;3.76e-08;11|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.06e-11,8;UBERON:0003135,4.04e-08,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58565817968474,2.51806559810822,1.51052125730374,0.310983165046111,1.51392510525377,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,1.12527203925513,0.962776056180637,2.49264202817511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378499274505237,1.63898357945543,0.253397002022874,0.407955318967927,1.3360870263278,1.47031839255752,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr4:113571650..113571659,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_at_chr4:113571650..113571659,+ | |||
|id=chr4:113571650..113571659,+ | |||
|ontology_enrichment_celltype=CL:0002322!9.37e-35!5;CL:0000039!7.53e-16!7;CL:0000586!7.53e-16!7;CL:0000148!4.99e-11!10;CL:0000541!4.99e-11!10;CL:0000540!5.11e-11!6;CL:0000031!5.11e-11!6;CL:0000404!5.11e-11!6;CL:0000047!2.23e-08!8;CL:0000710!3.10e-08!20;CL:0000147!6.56e-08!14;CL:0000946!9.29e-08!1;CL:0000786!9.29e-08!1;CL:0000980!9.29e-08!1;CL:0000133!1.56e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.16e-63;5!CL:0002321;1.58e-21;15!CL:0000540;2.66e-14;6!CL:0000404;2.66e-14;6!CL:0000039;2.81e-12;7!CL:0000586;2.81e-12;7!CL:0000148;7.07e-09;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,9.68e-64,5;CL:0000540,3.25e-14,6;CL:0000031,3.25e-14,6;CL:0000404,3.25e-14,6;CL:0000039,3.15e-12,7;CL:0000586,3.15e-12,7;CL:0000047,6.61e-11,8;CL:0000148,6.54e-09,10;CL:0000541,6.54e-09,10 | |||
|ontology_enrichment_development_v019=CL:0000031;2.66e-14;6!UBERON:0009117;7.07e-09;10!UBERON:0005564;7.07e-09;10 | |||
|ontology_enrichment_disease=DOID:3095!1.49e-18!22;DOID:2994!1.49e-18!22;DOID:2355!1.21e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:3095;9.81e-09;22!DOID:2994;9.81e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,9.43e-09,22;DOID:2994,9.43e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0003135!3.06e-15!11;UBERON:0000473!6.85e-14!8;UBERON:0000991!5.99e-08!21;UBERON:0009196!5.99e-08!21;UBERON:0009117!5.99e-08!21;UBERON:0005564!5.99e-08!21;UBERON:0001301!7.59e-08!1;UBERON:0001282!9.94e-08!1;UBERON:0009842!9.94e-08!1;UBERON:0003704!9.94e-08!1;UBERON:0001171!9.94e-08!1;UBERON:0001172!9.94e-08!1;UBERON:0004176!1.41e-07!22;UBERON:0003101!1.63e-07!22;UBERON:0000079!1.63e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;7.29e-11;8!UBERON:0000922;1.05e-08;49!UBERON:0003135;3.76e-08;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.06e-11,8;UBERON:0003135,4.04e-08,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58565817968474,2.51806559810822,1.51052125730374,0.310983165046111,1.51392510525377,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,1.12527203925513,0.962776056180637,2.49264202817511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378499274505237,1.63898357945543,0.253397002022874,0.407955318967927,1.3360870263278,1.47031839255752,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:113571650..113571659,+ | |||
}} |
Revision as of 02:04, 13 September 2013
Short description: | p@chr4:113571650..113571659, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:113571650..113571659, + |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 9.68e-64 | 5 |
neuron | 3.25e-14 | 6 |
neuroblast | 3.25e-14 | 6 |
electrically signaling cell | 3.25e-14 | 6 |
germ line cell | 3.15e-12 | 7 |
germ cell | 3.15e-12 | 7 |
neuronal stem cell | 6.61e-11 | 8 |
melanocyte | 6.54e-09 | 10 |
melanoblast | 6.54e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
testis | 8.06e-11 | 8 |
male reproductive organ | 4.04e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 9.43e-09 | 22 |
germ cell cancer | 9.43e-09 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.