FFCP PHASE1:Hg19::chr6:24358328..24358339,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51473|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18141|TSSclassifier=S|UniProt=Q9UHG0,E9PGI5|association_with_transcript=-48bp_to_ENST00000378454,ENST00000451359,NM_016356,uc003ndx.2_5end|description=CAGE_peak_7_at_DCDC2_5end|id=chr6:24358328..24358339,-|ontology_enrichment_celltype=CL:1000507!2.89e-17!12;CL:1000494!2.89e-17!12;CL:1000497!3.16e-16!18;CL:0002518!3.16e-16!18;CL:1000449!3.26e-15!16;CL:0002681!3.85e-09!13;CL:0002584!3.85e-09!13;CL:0000239!5.64e-09!3;CL:1000615!5.64e-09!3;CL:0002306!5.64e-09!3;CL:0000064!2.03e-08!3;CL:0005012!2.03e-08!3;CL:0000067!2.03e-08!3;CL:0002304!2.03e-08!3;CL:0002149!1.77e-07!6;CL:0002255!1.77e-07!6|ontology_enrichment_celltype_v019=CL:1000507;1.47e-24;10!CL:1000494;1.47e-24;10!CL:1000497;1.82e-20;17!CL:0002518;1.82e-20;17!CL:1000449;2.27e-16;15!CL:0000313;1.60e-11;1!CL:0000333;6.19e-09;5|ontology_enrichment_celltype_v019_2=CL:1000507,1.48e-24,10;CL:1000494,1.48e-24,10;CL:1000497,1.88e-20,17;CL:0002518,1.88e-20,17;CL:1000449,2.28e-16,15;CL:0000313,1.45e-11,1|ontology_enrichment_development_v019=UBERON:0007123;5.07e-09;5|ontology_enrichment_disease=DOID:193!4.52e-15!29;DOID:120!5.07e-14!27;DOID:299!4.64e-09!25;DOID:3001!1.77e-07!6;DOID:4468!9.56e-07!2|ontology_enrichment_disease_v019=DOID:171;1.88e-16;10!DOID:2152;1.60e-11;1!DOID:299;8.68e-10;25!DOID:169;1.38e-07;6!DOID:3095;1.39e-07;22!DOID:2994;1.39e-07;22|ontology_enrichment_disease_v019_2=DOID:171,2.39e-16,10;DOID:2152,1.45e-11,1;DOID:299,6.78e-10,25;DOID:0050687,7.62e-10,143;DOID:3095,1.55e-07,22;DOID:2994,1.55e-07,22;DOID:169,1.68e-07,6|ontology_enrichment_uberon=UBERON:0005172!2.88e-19!55;UBERON:0005173!2.88e-19!55;UBERON:0002113!1.33e-18!27;UBERON:0003918!1.33e-18!27;UBERON:0005095!1.33e-18!27;UBERON:0007687!1.33e-18!27;UBERON:0009773!2.89e-17!12;UBERON:0001231!2.89e-17!12;UBERON:0004810!2.89e-17!12;UBERON:0002417!9.47e-17!61;UBERON:0000916!9.47e-17!61;UBERON:0006554!2.30e-16!44;UBERON:0001008!6.88e-16!45;UBERON:0004211!3.26e-15!16;UBERON:0001285!3.26e-15!16;UBERON:0007684!3.26e-15!16;UBERON:0003220!3.26e-15!16;UBERON:0004208!3.26e-15!16;UBERON:0000489!4.39e-15!32;UBERON:0006555!3.49e-14!17;UBERON:0005103!3.49e-14!17;UBERON:0000083!3.49e-14!17;UBERON:0009201!3.49e-14!17;UBERON:0004819!3.49e-14!17;UBERON:0006553!3.49e-14!17;UBERON:0003074!3.49e-14!17;UBERON:0003060!3.49e-14!17;UBERON:0003064!3.57e-14!37;UBERON:0000080!2.87e-13!18;UBERON:0002120!2.87e-13!18;UBERON:0004875!2.87e-13!18;UBERON:0005721!2.87e-13!18;UBERON:0005754!2.87e-13!18;UBERON:0007297!2.87e-13!18;UBERON:0001851!6.98e-12!16;UBERON:0004876!1.02e-11!20;UBERON:0003887!4.72e-11!21;UBERON:0001225!3.85e-09!13;UBERON:0008987!3.85e-09!13;UBERON:0006853!5.64e-09!3;UBERON:0007685!5.64e-09!3;UBERON:0004134!5.64e-09!3;UBERON:0000058!1.65e-08!26;UBERON:0001778!2.03e-08!3;UBERON:0001775!2.03e-08!3;UBERON:0005177!6.95e-08!107;UBERON:0009569!3.62e-07!113;UBERON:0003929!4.44e-07!54;UBERON:0000353!9.96e-07!17|ontology_enrichment_uberon_v019=UBERON:0004211;1.47e-24;10!UBERON:0009773;1.47e-24;10!UBERON:0001231;1.47e-24;10!UBERON:0004810;1.47e-24;10!UBERON:0006555;2.27e-16;15!UBERON:0004819;2.27e-16;15!UBERON:0001285;2.27e-16;15!UBERON:0007684;2.27e-16;15!UBERON:0002113;2.12e-14;24!UBERON:0011143;2.12e-14;24!UBERON:0000489;7.49e-12;29!UBERON:0004911;1.60e-11;1!UBERON:0006554;1.92e-11;30!UBERON:0001008;1.92e-11;30!UBERON:0002346;2.97e-11;4!UBERON:0000923;2.97e-11;4!UBERON:0010316;2.97e-11;4!UBERON:0005291;2.97e-11;4!UBERON:0002050;3.53e-09;5!UBERON:0005423;3.53e-09;5!UBERON:0002046;5.07e-09;5!UBERON:0000013;6.19e-09;5!UBERON:0002410;6.19e-09;5|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.48e-24,10;UBERON:0004211,2.28e-16,15;UBERON:0009773,2.28e-16,15;UBERON:0001231,2.28e-16,15;UBERON:0001285,2.28e-16,15;UBERON:0007684,2.28e-16,15;UBERON:0004208,2.28e-16,15;UBERON:0006555,2.42e-15,16;UBERON:0004819,2.42e-15,16;UBERON:0002113,2.97e-13,26;UBERON:0003918,2.97e-13,26;UBERON:0011143,2.97e-13,26;UBERON:0005095,2.97e-13,26;UBERON:0007687,2.97e-13,26;UBERON:0004911,1.45e-11,1;UBERON:0000489,4.71e-11,31;UBERON:0002046,6.19e-09,5;UBERON:0004117,6.19e-09,5;UBERON:0007689,6.19e-09,5;UBERON:0007123,6.19e-09,5;UBERON:0003091,6.19e-09,5;UBERON:0000013,7.86e-09,5;UBERON:0002410,7.86e-09,5;UBERON:0005172,2.79e-08,54;UBERON:0005173,2.79e-08,54;UBERON:0002417,2.21e-07,60;UBERON:0000916,2.21e-07,60;UBERON:0006554,3.79e-07,47;UBERON:0001008,5.46e-07,48|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0.443458794925128,0.43917392846563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51473 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18141 | |||
|TSSclassifier=S | |||
|UniProt=Q9UHG0,E9PGI5 | |||
|association_with_transcript=-48bp_to_ENST00000378454,ENST00000451359,NM_016356,uc003ndx.2_5end | |||
|description=CAGE_peak_7_at_DCDC2_5end | |||
|id=chr6:24358328..24358339,- | |||
|ontology_enrichment_celltype=CL:1000507!2.89e-17!12;CL:1000494!2.89e-17!12;CL:1000497!3.16e-16!18;CL:0002518!3.16e-16!18;CL:1000449!3.26e-15!16;CL:0002681!3.85e-09!13;CL:0002584!3.85e-09!13;CL:0000239!5.64e-09!3;CL:1000615!5.64e-09!3;CL:0002306!5.64e-09!3;CL:0000064!2.03e-08!3;CL:0005012!2.03e-08!3;CL:0000067!2.03e-08!3;CL:0002304!2.03e-08!3;CL:0002149!1.77e-07!6;CL:0002255!1.77e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.47e-24;10!CL:1000494;1.47e-24;10!CL:1000497;1.82e-20;17!CL:0002518;1.82e-20;17!CL:1000449;2.27e-16;15!CL:0000313;1.60e-11;1!CL:0000333;6.19e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.48e-24,10;CL:1000494,1.48e-24,10;CL:1000497,1.88e-20,17;CL:0002518,1.88e-20,17;CL:1000449,2.28e-16,15;CL:0000313,1.45e-11,1 | |||
|ontology_enrichment_development_v019=UBERON:0007123;5.07e-09;5 | |||
|ontology_enrichment_disease=DOID:193!4.52e-15!29;DOID:120!5.07e-14!27;DOID:299!4.64e-09!25;DOID:3001!1.77e-07!6;DOID:4468!9.56e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:171;1.88e-16;10!DOID:2152;1.60e-11;1!DOID:299;8.68e-10;25!DOID:169;1.38e-07;6!DOID:3095;1.39e-07;22!DOID:2994;1.39e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.39e-16,10;DOID:2152,1.45e-11,1;DOID:299,6.78e-10,25;DOID:0050687,7.62e-10,143;DOID:3095,1.55e-07,22;DOID:2994,1.55e-07,22;DOID:169,1.68e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0005172!2.88e-19!55;UBERON:0005173!2.88e-19!55;UBERON:0002113!1.33e-18!27;UBERON:0003918!1.33e-18!27;UBERON:0005095!1.33e-18!27;UBERON:0007687!1.33e-18!27;UBERON:0009773!2.89e-17!12;UBERON:0001231!2.89e-17!12;UBERON:0004810!2.89e-17!12;UBERON:0002417!9.47e-17!61;UBERON:0000916!9.47e-17!61;UBERON:0006554!2.30e-16!44;UBERON:0001008!6.88e-16!45;UBERON:0004211!3.26e-15!16;UBERON:0001285!3.26e-15!16;UBERON:0007684!3.26e-15!16;UBERON:0003220!3.26e-15!16;UBERON:0004208!3.26e-15!16;UBERON:0000489!4.39e-15!32;UBERON:0006555!3.49e-14!17;UBERON:0005103!3.49e-14!17;UBERON:0000083!3.49e-14!17;UBERON:0009201!3.49e-14!17;UBERON:0004819!3.49e-14!17;UBERON:0006553!3.49e-14!17;UBERON:0003074!3.49e-14!17;UBERON:0003060!3.49e-14!17;UBERON:0003064!3.57e-14!37;UBERON:0000080!2.87e-13!18;UBERON:0002120!2.87e-13!18;UBERON:0004875!2.87e-13!18;UBERON:0005721!2.87e-13!18;UBERON:0005754!2.87e-13!18;UBERON:0007297!2.87e-13!18;UBERON:0001851!6.98e-12!16;UBERON:0004876!1.02e-11!20;UBERON:0003887!4.72e-11!21;UBERON:0001225!3.85e-09!13;UBERON:0008987!3.85e-09!13;UBERON:0006853!5.64e-09!3;UBERON:0007685!5.64e-09!3;UBERON:0004134!5.64e-09!3;UBERON:0000058!1.65e-08!26;UBERON:0001778!2.03e-08!3;UBERON:0001775!2.03e-08!3;UBERON:0005177!6.95e-08!107;UBERON:0009569!3.62e-07!113;UBERON:0003929!4.44e-07!54;UBERON:0000353!9.96e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.47e-24;10!UBERON:0009773;1.47e-24;10!UBERON:0001231;1.47e-24;10!UBERON:0004810;1.47e-24;10!UBERON:0006555;2.27e-16;15!UBERON:0004819;2.27e-16;15!UBERON:0001285;2.27e-16;15!UBERON:0007684;2.27e-16;15!UBERON:0002113;2.12e-14;24!UBERON:0011143;2.12e-14;24!UBERON:0000489;7.49e-12;29!UBERON:0004911;1.60e-11;1!UBERON:0006554;1.92e-11;30!UBERON:0001008;1.92e-11;30!UBERON:0002346;2.97e-11;4!UBERON:0000923;2.97e-11;4!UBERON:0010316;2.97e-11;4!UBERON:0005291;2.97e-11;4!UBERON:0002050;3.53e-09;5!UBERON:0005423;3.53e-09;5!UBERON:0002046;5.07e-09;5!UBERON:0000013;6.19e-09;5!UBERON:0002410;6.19e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.48e-24,10;UBERON:0004211,2.28e-16,15;UBERON:0009773,2.28e-16,15;UBERON:0001231,2.28e-16,15;UBERON:0001285,2.28e-16,15;UBERON:0007684,2.28e-16,15;UBERON:0004208,2.28e-16,15;UBERON:0006555,2.42e-15,16;UBERON:0004819,2.42e-15,16;UBERON:0002113,2.97e-13,26;UBERON:0003918,2.97e-13,26;UBERON:0011143,2.97e-13,26;UBERON:0005095,2.97e-13,26;UBERON:0007687,2.97e-13,26;UBERON:0004911,1.45e-11,1;UBERON:0000489,4.71e-11,31;UBERON:0002046,6.19e-09,5;UBERON:0004117,6.19e-09,5;UBERON:0007689,6.19e-09,5;UBERON:0007123,6.19e-09,5;UBERON:0003091,6.19e-09,5;UBERON:0000013,7.86e-09,5;UBERON:0002410,7.86e-09,5;UBERON:0005172,2.79e-08,54;UBERON:0005173,2.79e-08,54;UBERON:0002417,2.21e-07,60;UBERON:0000916,2.21e-07,60;UBERON:0006554,3.79e-07,47;UBERON:0001008,5.46e-07,48 | |||
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|short_description=p7@DCDC2 | |||
}} |
Revision as of 19:39, 13 September 2013
Short description: | p7@DCDC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_DCDC2_5end |
Coexpression cluster: | NA |
Association with transcript: | -48bp_to_ENST00000378454, ENST00000451359, NM_016356, uc003ndx.2_5end |
EntrezGene: | DCDC2 |
HGNC: | 18141 |
UniProt: | Q9UHG0E9PGI5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.48e-24 | 10 |
nephron tubule epithelial cell | 1.48e-24 | 10 |
kidney cell | 1.88e-20 | 17 |
kidney epithelial cell | 1.88e-20 | 17 |
epithelial cell of nephron | 2.28e-16 | 15 |
serous secreting cell | 1.45e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 1.48e-24 | 10 |
nephron epithelium | 2.28e-16 | 15 |
renal tubule | 2.28e-16 | 15 |
nephron tubule | 2.28e-16 | 15 |
nephron | 2.28e-16 | 15 |
uriniferous tubule | 2.28e-16 | 15 |
nephrogenic mesenchyme | 2.28e-16 | 15 |
excretory tube | 2.42e-15 | 16 |
kidney epithelium | 2.42e-15 | 16 |
kidney | 2.97e-13 | 26 |
kidney mesenchyme | 2.97e-13 | 26 |
upper urinary tract | 2.97e-13 | 26 |
kidney rudiment | 2.97e-13 | 26 |
kidney field | 2.97e-13 | 26 |
epithelium of female gonad | 1.45e-11 | 1 |
cavitated compound organ | 4.71e-11 | 31 |
thyroid gland | 6.19e-09 | 5 |
pharyngeal pouch | 6.19e-09 | 5 |
thyroid diverticulum | 6.19e-09 | 5 |
pharyngeal pouch 2 | 6.19e-09 | 5 |
thyroid primordium | 6.19e-09 | 5 |
sympathetic nervous system | 7.86e-09 | 5 |
autonomic nervous system | 7.86e-09 | 5 |
abdomen element | 2.79e-08 | 54 |
abdominal segment element | 2.79e-08 | 54 |
abdominal segment of trunk | 2.21e-07 | 60 |
abdomen | 2.21e-07 | 60 |
urinary system structure | 3.79e-07 | 47 |
renal system | 5.46e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.39e-16 | 10 |
ovary epithelial cancer | 1.45e-11 | 1 |
adenocarcinoma | 6.78e-10 | 25 |
cell type cancer | 7.62e-10 | 143 |
germ cell and embryonal cancer | 1.55e-07 | 22 |
germ cell cancer | 1.55e-07 | 22 |
neuroendocrine tumor | 1.68e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.