FFCP PHASE1:Hg19::chr7:107883761..107883772,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4897|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7994|TSSclassifier=S|UniProt=C9JH43|association_with_transcript=-77bp_to_ENST00000417701_5end|coexpression_cluster_id=C445|description=CAGE_peak_18_at_NRCAM_5end|id=chr7:107883761..107883772,-|ontology_enrichment_celltype=CL:0000064!1.27e-16!3;CL:0005012!1.27e-16!3;CL:0000067!1.27e-16!3;CL:0002304!1.27e-16!3|ontology_enrichment_celltype_v019=CL:0000064;1.03e-17;3!CL:0000067;1.03e-17;3!CL:0005012;1.03e-17;3!CL:0002304;1.03e-17;3!CL:0000306;1.00e-13;4!CL:0002222;1.00e-13;4!CL:0002224;1.00e-13;4!CL:0000075;2.18e-08;27|ontology_enrichment_celltype_v019_2=CL:0000064,9.46e-18,3;CL:0000067,9.46e-18,3;CL:0005012,9.46e-18,3;CL:0002304,9.46e-18,3;CL:0000306,1.00e-13,4;CL:0002222,1.00e-13,4;CL:0002224,1.00e-13,4;CL:0000075,2.14e-08,27|ontology_enrichment_development_v019=UBERON:0006222;5.12e-50;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003075!1.47e-24!86;UBERON:0007284!1.47e-24!86;UBERON:0002346!2.10e-23!90;UBERON:0001049!7.34e-19!57;UBERON:0005068!7.34e-19!57;UBERON:0006241!7.34e-19!57;UBERON:0007135!7.34e-19!57;UBERON:0002616!3.42e-18!59;UBERON:0003056!1.22e-17!61;UBERON:0001896!8.55e-17!3;UBERON:0005290!8.55e-17!3;UBERON:0010096!8.55e-17!3;UBERON:0001778!1.27e-16!3;UBERON:0001775!1.27e-16!3;UBERON:0000955!3.49e-15!69;UBERON:0006238!3.49e-15!69;UBERON:0000033!4.09e-14!123;UBERON:0002298!8.94e-14!8;UBERON:0004121!2.10e-13!169;UBERON:0000153!2.18e-13!129;UBERON:0007811!2.18e-13!129;UBERON:0001874!2.95e-13!1;UBERON:0002146!3.33e-13!1;UBERON:0005623!3.33e-13!1;UBERON:0000924!4.69e-13!173;UBERON:0006601!4.69e-13!173;UBERON:0002780!4.97e-13!41;UBERON:0001890!4.97e-13!41;UBERON:0006240!4.97e-13!41;UBERON:0007190!5.38e-13!1;UBERON:0002336!6.06e-13!1;UBERON:0001018!6.06e-13!1;UBERON:0002473!6.06e-13!1;UBERON:0005340!6.06e-13!1;UBERON:0002316!6.06e-13!1;UBERON:0003544!6.06e-13!1;UBERON:0001020!6.06e-13!1;UBERON:0005970!6.06e-13!1;UBERON:0002437!6.06e-13!1;UBERON:0003080!1.03e-12!42;UBERON:0000488!1.03e-12!4;UBERON:0002581!1.09e-12!1;UBERON:0001017!1.22e-12!82;UBERON:0005743!5.23e-12!86;UBERON:0001893!1.23e-11!34;UBERON:0000073!8.94e-11!94;UBERON:0001016!8.94e-11!94;UBERON:0007625!2.68e-10!11;UBERON:0004733!2.26e-09!12;UBERON:0002028!2.26e-09!12;UBERON:0007277!2.26e-09!12;UBERON:0007023!6.74e-09!115;UBERON:0002203!8.91e-09!6;UBERON:0001768!8.91e-09!6;UBERON:0001869!8.96e-09!32;UBERON:0004732!1.08e-08!13;UBERON:0000200!1.31e-08!6;UBERON:0002791!1.66e-08!33;UBERON:0001801!3.34e-08!14;UBERON:0009663!1.09e-07!7;UBERON:0000483!1.13e-07!309;UBERON:0003076!1.34e-07!15;UBERON:0003057!1.34e-07!15;UBERON:0000119!1.41e-07!312;UBERON:0000064!2.94e-07!219;UBERON:0001875!3.48e-07!2;UBERON:0006514!3.48e-07!2;UBERON:0005162!4.17e-07!2;UBERON:0000122!4.17e-07!2;UBERON:0000025!4.95e-07!194;UBERON:0000076!8.12e-07!8|ontology_enrichment_uberon_v019=UBERON:0007625;5.38e-19;11!UBERON:0001778;1.03e-17;3!UBERON:0001775;1.03e-17;3!UBERON:0001801;3.53e-15;14!UBERON:0010077;1.00e-13;4!UBERON:0005389;1.00e-13;4!UBERON:0000484;1.00e-13;4!UBERON:0000965;1.00e-13;4!UBERON:0001803;1.00e-13;4!UBERON:0000488;1.21e-13;4!UBERON:0000019;1.77e-11;19!UBERON:0000047;1.77e-11;19!UBERON:0004088;1.77e-11;19!UBERON:0010230;1.77e-11;19!UBERON:0000970;5.85e-11;20!UBERON:0002104;1.73e-10;21!UBERON:0001456;1.73e-10;21!UBERON:0000020;1.14e-09;23!UBERON:0002203;1.50e-09;6!UBERON:0001768;1.50e-09;6!UBERON:0002200;1.50e-09;6!UBERON:0001032;2.61e-09;24!UBERON:0004456;2.61e-09;24!UBERON:0001894;2.26e-08;7!UBERON:0010371;1.19e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0007625,5.14e-19,11;UBERON:0001778,9.46e-18,3;UBERON:0001775,9.46e-18,3;UBERON:0001801,3.41e-15,14;UBERON:0010077,1.00e-13,4;UBERON:0005389,1.00e-13,4;UBERON:0000484,1.00e-13,4;UBERON:0002546,1.00e-13,4;UBERON:0000965,1.00e-13,4;UBERON:0001803,1.00e-13,4;UBERON:0003073,1.00e-13,4;UBERON:0005426,1.00e-13,4;UBERON:0000488,1.13e-13,4;UBERON:0000019,5.70e-11,20;UBERON:0000047,5.70e-11,20;UBERON:0010312,5.70e-11,20;UBERON:0004088,5.70e-11,20;UBERON:0010230,5.70e-11,20;UBERON:0003072,5.70e-11,20;UBERON:0004128,5.70e-11,20;UBERON:0003071,5.70e-11,20;UBERON:0000970,1.69e-10,21;UBERON:0002104,1.69e-10,21;UBERON:0001456,4.53e-10,22;UBERON:0002203,1.44e-09,6;UBERON:0001768,1.44e-09,6;UBERON:0002200,1.44e-09,6;UBERON:0000020,2.56e-09,24;UBERON:0001032,2.56e-09,24;UBERON:0004456,2.56e-09,24;UBERON:0001894,2.35e-08,7;UBERON:0006222,2.35e-08,7;UBERON:0003056,4.61e-08,61;UBERON:0000076,1.59e-07,8;UBERON:0005085,1.92e-07,31|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3633704291017,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4897 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7994 | |||
|TSSclassifier=S | |||
|UniProt=C9JH43 | |||
|association_with_transcript=-77bp_to_ENST00000417701_5end | |||
|coexpression_cluster_id=C445 | |||
|description=CAGE_peak_18_at_NRCAM_5end | |||
|id=chr7:107883761..107883772,- | |||
|ontology_enrichment_celltype=CL:0000064!1.27e-16!3;CL:0005012!1.27e-16!3;CL:0000067!1.27e-16!3;CL:0002304!1.27e-16!3 | |||
|ontology_enrichment_celltype_v019=CL:0000064;1.03e-17;3!CL:0000067;1.03e-17;3!CL:0005012;1.03e-17;3!CL:0002304;1.03e-17;3!CL:0000306;1.00e-13;4!CL:0002222;1.00e-13;4!CL:0002224;1.00e-13;4!CL:0000075;2.18e-08;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,9.46e-18,3;CL:0000067,9.46e-18,3;CL:0005012,9.46e-18,3;CL:0002304,9.46e-18,3;CL:0000306,1.00e-13,4;CL:0002222,1.00e-13,4;CL:0002224,1.00e-13,4;CL:0000075,2.14e-08,27 | |||
|ontology_enrichment_development_v019=UBERON:0006222;5.12e-50;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!1.47e-24!86;UBERON:0007284!1.47e-24!86;UBERON:0002346!2.10e-23!90;UBERON:0001049!7.34e-19!57;UBERON:0005068!7.34e-19!57;UBERON:0006241!7.34e-19!57;UBERON:0007135!7.34e-19!57;UBERON:0002616!3.42e-18!59;UBERON:0003056!1.22e-17!61;UBERON:0001896!8.55e-17!3;UBERON:0005290!8.55e-17!3;UBERON:0010096!8.55e-17!3;UBERON:0001778!1.27e-16!3;UBERON:0001775!1.27e-16!3;UBERON:0000955!3.49e-15!69;UBERON:0006238!3.49e-15!69;UBERON:0000033!4.09e-14!123;UBERON:0002298!8.94e-14!8;UBERON:0004121!2.10e-13!169;UBERON:0000153!2.18e-13!129;UBERON:0007811!2.18e-13!129;UBERON:0001874!2.95e-13!1;UBERON:0002146!3.33e-13!1;UBERON:0005623!3.33e-13!1;UBERON:0000924!4.69e-13!173;UBERON:0006601!4.69e-13!173;UBERON:0002780!4.97e-13!41;UBERON:0001890!4.97e-13!41;UBERON:0006240!4.97e-13!41;UBERON:0007190!5.38e-13!1;UBERON:0002336!6.06e-13!1;UBERON:0001018!6.06e-13!1;UBERON:0002473!6.06e-13!1;UBERON:0005340!6.06e-13!1;UBERON:0002316!6.06e-13!1;UBERON:0003544!6.06e-13!1;UBERON:0001020!6.06e-13!1;UBERON:0005970!6.06e-13!1;UBERON:0002437!6.06e-13!1;UBERON:0003080!1.03e-12!42;UBERON:0000488!1.03e-12!4;UBERON:0002581!1.09e-12!1;UBERON:0001017!1.22e-12!82;UBERON:0005743!5.23e-12!86;UBERON:0001893!1.23e-11!34;UBERON:0000073!8.94e-11!94;UBERON:0001016!8.94e-11!94;UBERON:0007625!2.68e-10!11;UBERON:0004733!2.26e-09!12;UBERON:0002028!2.26e-09!12;UBERON:0007277!2.26e-09!12;UBERON:0007023!6.74e-09!115;UBERON:0002203!8.91e-09!6;UBERON:0001768!8.91e-09!6;UBERON:0001869!8.96e-09!32;UBERON:0004732!1.08e-08!13;UBERON:0000200!1.31e-08!6;UBERON:0002791!1.66e-08!33;UBERON:0001801!3.34e-08!14;UBERON:0009663!1.09e-07!7;UBERON:0000483!1.13e-07!309;UBERON:0003076!1.34e-07!15;UBERON:0003057!1.34e-07!15;UBERON:0000119!1.41e-07!312;UBERON:0000064!2.94e-07!219;UBERON:0001875!3.48e-07!2;UBERON:0006514!3.48e-07!2;UBERON:0005162!4.17e-07!2;UBERON:0000122!4.17e-07!2;UBERON:0000025!4.95e-07!194;UBERON:0000076!8.12e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;5.38e-19;11!UBERON:0001778;1.03e-17;3!UBERON:0001775;1.03e-17;3!UBERON:0001801;3.53e-15;14!UBERON:0010077;1.00e-13;4!UBERON:0005389;1.00e-13;4!UBERON:0000484;1.00e-13;4!UBERON:0000965;1.00e-13;4!UBERON:0001803;1.00e-13;4!UBERON:0000488;1.21e-13;4!UBERON:0000019;1.77e-11;19!UBERON:0000047;1.77e-11;19!UBERON:0004088;1.77e-11;19!UBERON:0010230;1.77e-11;19!UBERON:0000970;5.85e-11;20!UBERON:0002104;1.73e-10;21!UBERON:0001456;1.73e-10;21!UBERON:0000020;1.14e-09;23!UBERON:0002203;1.50e-09;6!UBERON:0001768;1.50e-09;6!UBERON:0002200;1.50e-09;6!UBERON:0001032;2.61e-09;24!UBERON:0004456;2.61e-09;24!UBERON:0001894;2.26e-08;7!UBERON:0010371;1.19e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,5.14e-19,11;UBERON:0001778,9.46e-18,3;UBERON:0001775,9.46e-18,3;UBERON:0001801,3.41e-15,14;UBERON:0010077,1.00e-13,4;UBERON:0005389,1.00e-13,4;UBERON:0000484,1.00e-13,4;UBERON:0002546,1.00e-13,4;UBERON:0000965,1.00e-13,4;UBERON:0001803,1.00e-13,4;UBERON:0003073,1.00e-13,4;UBERON:0005426,1.00e-13,4;UBERON:0000488,1.13e-13,4;UBERON:0000019,5.70e-11,20;UBERON:0000047,5.70e-11,20;UBERON:0010312,5.70e-11,20;UBERON:0004088,5.70e-11,20;UBERON:0010230,5.70e-11,20;UBERON:0003072,5.70e-11,20;UBERON:0004128,5.70e-11,20;UBERON:0003071,5.70e-11,20;UBERON:0000970,1.69e-10,21;UBERON:0002104,1.69e-10,21;UBERON:0001456,4.53e-10,22;UBERON:0002203,1.44e-09,6;UBERON:0001768,1.44e-09,6;UBERON:0002200,1.44e-09,6;UBERON:0000020,2.56e-09,24;UBERON:0001032,2.56e-09,24;UBERON:0004456,2.56e-09,24;UBERON:0001894,2.35e-08,7;UBERON:0006222,2.35e-08,7;UBERON:0003056,4.61e-08,61;UBERON:0000076,1.59e-07,8;UBERON:0005085,1.92e-07,31 | |||
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|short_description=p18@NRCAM | |||
}} |
Revision as of 22:41, 13 September 2013
Short description: | p18@NRCAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_18_at_NRCAM_5end |
Coexpression cluster: | C445_lung_Lens_Ciliary_diencephalon_thalamus_bile_hepatoma |
Association with transcript: | -77bp_to_ENST00000417701_5end |
EntrezGene: | NRCAM |
HGNC: | 7994 |
UniProt: | C9JH43 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 9.46e-18 | 3 |
ciliated epithelial cell | 9.46e-18 | 3 |
multi-ciliated epithelial cell | 9.46e-18 | 3 |
non-pigmented ciliary epithelial cell | 9.46e-18 | 3 |
crystallin accumulating cell | 1.00e-13 | 4 |
vertebrate lens cell | 1.00e-13 | 4 |
lens epithelial cell | 1.00e-13 | 4 |
columnar/cuboidal epithelial cell | 2.14e-08 | 27 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 5.14e-19 | 11 |
ciliary epithelium | 9.46e-18 | 3 |
ciliary body | 9.46e-18 | 3 |
anterior segment of eyeball | 3.41e-15 | 14 |
cuboidal epithelium | 1.00e-13 | 4 |
transparent eye structure | 1.00e-13 | 4 |
simple cuboidal epithelium | 1.00e-13 | 4 |
cranial placode | 1.00e-13 | 4 |
lens of camera-type eye | 1.00e-13 | 4 |
epithelium of lens | 1.00e-13 | 4 |
lens placode | 1.00e-13 | 4 |
lens vesicle | 1.00e-13 | 4 |
atypical epithelium | 1.13e-13 | 4 |
camera-type eye | 5.70e-11 | 20 |
simple eye | 5.70e-11 | 20 |
immature eye | 5.70e-11 | 20 |
ocular region | 5.70e-11 | 20 |
eyeball of camera-type eye | 5.70e-11 | 20 |
optic cup | 5.70e-11 | 20 |
optic vesicle | 5.70e-11 | 20 |
eye primordium | 5.70e-11 | 20 |
eye | 1.69e-10 | 21 |
visual system | 1.69e-10 | 21 |
face | 4.53e-10 | 22 |
vasculature of eye | 1.44e-09 | 6 |
uvea | 1.44e-09 | 6 |
vasculature of head | 1.44e-09 | 6 |
sense organ | 2.56e-09 | 24 |
sensory system | 2.56e-09 | 24 |
entire sense organ system | 2.56e-09 | 24 |
diencephalon | 2.35e-08 | 7 |
future diencephalon | 2.35e-08 | 7 |
pre-chordal neural plate | 4.61e-08 | 61 |
external ectoderm | 1.59e-07 | 8 |
ectodermal placode | 1.92e-07 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.