FFCP PHASE1:Mm9::chr3:126639582..126639596,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=438|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:126639582..126639596,-|id=chr3:126639582..126639596,-|ontology_enrichment_celltype=CL:0000117!8.87e-09!23;CL:0000337!8.87e-09!23;CL:0000540!3.35e-08!33;CL:0000047!3.35e-08!33;CL:0000031!3.35e-08!33;CL:0000404!3.35e-08!33;CL:0000393!3.28e-07!39;CL:0000211!3.28e-07!39|ontology_enrichment_celltype_v019_2=CL:0002610,1.10e-52,3;CL:0002612,5.11e-24,3;CL:0000117,1.61e-19,23;CL:0000337,1.61e-19,23;CL:0000540,8.03e-14,33;CL:0000047,8.03e-14,33;CL:0000031,8.03e-14,33;CL:0000404,8.03e-14,33;CL:0000393,8.52e-12,39;CL:0000211,8.52e-12,39;CL:0002319,9.33e-11,43;CL:0000221,1.59e-10,44;CL:0000133,1.59e-10,44;CL:0002321,8.13e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.00e-16!73;UBERON:0005743!1.00e-16!73;UBERON:0000073!5.44e-16!75;UBERON:0001016!5.44e-16!75;UBERON:0002346!9.08e-15!71;UBERON:0003075!9.08e-15!71;UBERON:0007284!9.08e-15!71;UBERON:0000033!1.84e-14!63;UBERON:0001049!2.91e-14!52;UBERON:0005068!2.91e-14!52;UBERON:0006241!2.91e-14!52;UBERON:0007135!2.91e-14!52;UBERON:0000955!5.55e-14!50;UBERON:0006238!5.55e-14!50;UBERON:0004121!7.49e-14!102;UBERON:0000924!7.49e-14!102;UBERON:0006601!7.49e-14!102;UBERON:0002616!4.02e-13!49;UBERON:0003056!9.97e-10!49;UBERON:0002020!1.12e-09!34;UBERON:0007811!6.92e-09!86;UBERON:0003076!1.21e-08!12;UBERON:0003057!1.21e-08!12;UBERON:0000153!4.05e-08!94;UBERON:0003080!8.07e-08!40;UBERON:0002780!3.01e-07!39;UBERON:0001890!3.01e-07!39;UBERON:0006240!3.01e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.10e-52,3;UBERON:0002275,1.10e-52,3;UBERON:0002257,5.11e-24,3;UBERON:0001948,7.12e-15,5;UBERON:0002315,7.12e-15,5;UBERON:0002240,1.41e-12,6;UBERON:0005174,1.41e-12,6;UBERON:0001137,1.41e-12,6;UBERON:0000073,1.10e-08,54;UBERON:0003076,8.83e-07,12;UBERON:0003057,8.83e-07,12|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,0,0,0.633831403506179,0,0,0,0,0,0,0,0.414758449233911,0,0,0.571301968807607,0,0,0.191690942036473,0,2.20231761998777,1.40456071893706,2.76491759861238,0.263772575460388,0.457438218012048,0,0,0,0.916789486660861,2.06240009831567,1.56608848879013,0.372798891650601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,0.41889341362691,0,0,0,0,0.149790639404823,0.457500602818626,0.125654352112864,0.173824320192276,0.511430914660661,0.20778804455956,0.324482526135515,0,0,0,0,0,0.229902104433473,0,0.150704817835715,0.136072998302656,0.12811372028485,0,0.517406741478031,0,0,0,0,0.278047249225598,0,0,0.199034266818493,0,0,0,0,0,0.180062061461015,0,0,0,0.232533944750408,0,0.116765342367169,0,0,0.162137619091711,0.146199987425332,0,0,0.630869845692382,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0.19496408711912,0,0,0,0,0,0,0,0.193952487167626,0.0701358198903186,0,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0,0.252470927204373,0,0,0.215423397732799,0,0,0,0.404810701674894,0,0.790575555893047,0.321321316421807,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0.18006109403131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.920650473014354,0,0.343706364687375,0,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0.222246727801615,0.412070114477788,0,0,0,0,0,0,0.0574354689556133,0.476293691283074,0,0,0,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0.526139422875686,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0,0.192906610981141,0,0,0,0,0,0|short_description=p@chr3:126639582..126639596,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=438 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:126639582..126639596,- | |||
|id=chr3:126639582..126639596,- | |||
|ontology_enrichment_celltype=CL:0000117!8.87e-09!23;CL:0000337!8.87e-09!23;CL:0000540!3.35e-08!33;CL:0000047!3.35e-08!33;CL:0000031!3.35e-08!33;CL:0000404!3.35e-08!33;CL:0000393!3.28e-07!39;CL:0000211!3.28e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,1.10e-52,3;CL:0002612,5.11e-24,3;CL:0000117,1.61e-19,23;CL:0000337,1.61e-19,23;CL:0000540,8.03e-14,33;CL:0000047,8.03e-14,33;CL:0000031,8.03e-14,33;CL:0000404,8.03e-14,33;CL:0000393,8.52e-12,39;CL:0000211,8.52e-12,39;CL:0002319,9.33e-11,43;CL:0000221,1.59e-10,44;CL:0000133,1.59e-10,44;CL:0002321,8.13e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.00e-16!73;UBERON:0005743!1.00e-16!73;UBERON:0000073!5.44e-16!75;UBERON:0001016!5.44e-16!75;UBERON:0002346!9.08e-15!71;UBERON:0003075!9.08e-15!71;UBERON:0007284!9.08e-15!71;UBERON:0000033!1.84e-14!63;UBERON:0001049!2.91e-14!52;UBERON:0005068!2.91e-14!52;UBERON:0006241!2.91e-14!52;UBERON:0007135!2.91e-14!52;UBERON:0000955!5.55e-14!50;UBERON:0006238!5.55e-14!50;UBERON:0004121!7.49e-14!102;UBERON:0000924!7.49e-14!102;UBERON:0006601!7.49e-14!102;UBERON:0002616!4.02e-13!49;UBERON:0003056!9.97e-10!49;UBERON:0002020!1.12e-09!34;UBERON:0007811!6.92e-09!86;UBERON:0003076!1.21e-08!12;UBERON:0003057!1.21e-08!12;UBERON:0000153!4.05e-08!94;UBERON:0003080!8.07e-08!40;UBERON:0002780!3.01e-07!39;UBERON:0001890!3.01e-07!39;UBERON:0006240!3.01e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.10e-52,3;UBERON:0002275,1.10e-52,3;UBERON:0002257,5.11e-24,3;UBERON:0001948,7.12e-15,5;UBERON:0002315,7.12e-15,5;UBERON:0002240,1.41e-12,6;UBERON:0005174,1.41e-12,6;UBERON:0001137,1.41e-12,6;UBERON:0000073,1.10e-08,54;UBERON:0003076,8.83e-07,12;UBERON:0003057,8.83e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,0,0,0.633831403506179,0,0,0,0,0,0,0,0.414758449233911,0,0,0.571301968807607,0,0,0.191690942036473,0,2.20231761998777,1.40456071893706,2.76491759861238,0.263772575460388,0.457438218012048,0,0,0,0.916789486660861,2.06240009831567,1.56608848879013,0.372798891650601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,0.41889341362691,0,0,0,0,0.149790639404823,0.457500602818626,0.125654352112864,0.173824320192276,0.511430914660661,0.20778804455956,0.324482526135515,0,0,0,0,0,0.229902104433473,0,0.150704817835715,0.136072998302656,0.12811372028485,0,0.517406741478031,0,0,0,0,0.278047249225598,0,0,0.199034266818493,0,0,0,0,0,0.180062061461015,0,0,0,0.232533944750408,0,0.116765342367169,0,0,0.162137619091711,0.146199987425332,0,0,0.630869845692382,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0.19496408711912,0,0,0,0,0,0,0,0.193952487167626,0.0701358198903186,0,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0,0.252470927204373,0,0,0.215423397732799,0,0,0,0.404810701674894,0,0.790575555893047,0.321321316421807,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0.18006109403131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.920650473014354,0,0.343706364687375,0,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0.222246727801615,0.412070114477788,0,0,0,0,0,0,0.0574354689556133,0.476293691283074,0,0,0,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0.526139422875686,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0,0.192906610981141,0,0,0,0,0,0 | |||
|short_description=p@chr3:126639582..126639596,- | |||
}} |
Revision as of 01:27, 14 September 2013
Short description: | p@chr3:126639582..126639596, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:126639582..126639596, - |
Coexpression cluster: | MCL_coexpression_mm9:438 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 1.10e-52 | 3 |
neuron of the ventral spinal cord | 5.11e-24 | 3 |
CNS neuron (sensu Vertebrata) | 1.61e-19 | 23 |
neuroblast (sensu Vertebrata) | 1.61e-19 | 23 |
neuron | 8.03e-14 | 33 |
neuronal stem cell | 8.03e-14 | 33 |
neuroblast | 8.03e-14 | 33 |
electrically signaling cell | 8.03e-14 | 33 |
electrically responsive cell | 8.52e-12 | 39 |
electrically active cell | 8.52e-12 | 39 |
neural cell | 9.33e-11 | 43 |
ectodermal cell | 1.59e-10 | 44 |
neurectodermal cell | 1.59e-10 | 44 |
embryonic cell | 8.13e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 1.10e-52 | 3 |
reticular formation | 1.10e-52 | 3 |
ventral horn of spinal cord | 5.11e-24 | 3 |
regional part of spinal cord | 7.12e-15 | 5 |
gray matter of spinal cord | 7.12e-15 | 5 |
spinal cord | 1.41e-12 | 6 |
dorsal region element | 1.41e-12 | 6 |
dorsum | 1.41e-12 | 6 |
regional part of nervous system | 1.10e-08 | 54 |
posterior neural tube | 8.83e-07 | 12 |
chordal neural plate | 8.83e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.