FFCP PHASE1:Mm9::chr7:16957541..16957570,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=74|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:16957541..16957570,-|id=chr7:16957541..16957570,-|ontology_enrichment_celltype=CL:0000239!3.13e-14!6;CL:0000677!3.13e-14!6;CL:0000212!3.13e-14!6;CL:0000584!3.13e-14!6;CL:0000075!4.46e-12!7;CL:0002563!5.39e-12!9;CL:0002251!5.39e-12!9;CL:0000473!6.91e-08!3;CL:0000627!6.91e-08!3;CL:0000682!6.91e-08!3;CL:0000066!1.57e-07!25;CL:0002076!9.76e-07!15|ontology_enrichment_celltype_v019_2=CL:0000239,9.41e-20,6;CL:0000677,9.41e-20,6;CL:0000584,9.41e-20,6;CL:0000075,7.55e-17,7;CL:0002563,5.70e-13,9;CL:0002251,5.70e-13,9;CL:0000682,1.20e-10,3;CL:0000066,2.12e-09,25;CL:0002076,1.57e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.70e-25!43;UBERON:0000344!4.85e-24!15;UBERON:0005409!2.87e-20!59;UBERON:0001242!5.68e-20!13;UBERON:0000060!5.68e-20!13;UBERON:0001262!5.68e-20!13;UBERON:0004786!5.68e-20!13;UBERON:0004923!5.71e-16!24;UBERON:0003350!5.39e-12!9;UBERON:0004808!5.39e-12!9;UBERON:0001277!5.39e-12!9;UBERON:0000485!1.33e-09!11;UBERON:0001007!2.69e-08!128;UBERON:0001555!2.69e-08!128;UBERON:0007026!2.69e-08!128;UBERON:0004119!4.59e-08!130;UBERON:0000925!4.59e-08!130;UBERON:0006595!4.59e-08!130;UBERON:0000331!1.65e-07!3;UBERON:0002116!1.65e-07!3;UBERON:0001204!1.65e-07!3;UBERON:0001168!1.65e-07!3;UBERON:0004921!7.45e-07!126;UBERON:0004185!7.45e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.13e-42,31;UBERON:0000344,1.15e-29,15;UBERON:0005409,2.76e-29,47;UBERON:0001242,5.87e-24,13;UBERON:0001262,5.87e-24,13;UBERON:0004786,5.87e-24,13;UBERON:0004923,1.16e-17,24;UBERON:0003350,5.70e-13,9;UBERON:0004808,5.70e-13,9;UBERON:0001277,5.70e-13,9;UBERON:0002108,7.87e-13,4;UBERON:0001007,1.09e-11,116;UBERON:0001555,1.09e-11,116;UBERON:0007026,1.09e-11,116;UBERON:0004119,2.07e-11,118;UBERON:0000925,2.07e-11,118;UBERON:0006595,2.07e-11,118;UBERON:0000485,1.69e-10,11;UBERON:0000331,4.19e-10,3;UBERON:0002116,4.19e-10,3;UBERON:0001204,4.19e-10,3;UBERON:0001168,4.19e-10,3;UBERON:0004921,1.55e-09,114;UBERON:0001155,1.08e-07,2;UBERON:0000059,1.08e-07,2;UBERON:0001962,1.82e-07,2;UBERON:0001961,1.82e-07,2;UBERON:0001744,1.82e-07,2|phase1_expression=0,8.02643437570531,6.82498859084304,9.37639055051173,15.0268718983904,1.84667199103079,3.03696432774183,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0.261199789138935,6.87967418011649,4.12936705920906,5.7423196411502,8.18447792702242,4.30942465371778,7.60093677825496,4.28451220591882,1.33038306393183,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,1.7127581957859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,13.0283098156382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.6152793538613,0,0,0,0,0,0.22237804384487,0,8.54152310780121,1.15289268306808,1.00534083520108,1.79060824837036,1.55971269695296,7.19055526923377,7.99710784536369,5.57595565112228,0,0,0,0,0,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775284879504663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33184669303881,0,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42576470620972,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476293691283074,0,0,0.412085900803307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191288332068843,0,0|short_description=p@chr7:16957541..16957570,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=74 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:16957541..16957570,- | |||
|id=chr7:16957541..16957570,- | |||
|ontology_enrichment_celltype=CL:0000239!3.13e-14!6;CL:0000677!3.13e-14!6;CL:0000212!3.13e-14!6;CL:0000584!3.13e-14!6;CL:0000075!4.46e-12!7;CL:0002563!5.39e-12!9;CL:0002251!5.39e-12!9;CL:0000473!6.91e-08!3;CL:0000627!6.91e-08!3;CL:0000682!6.91e-08!3;CL:0000066!1.57e-07!25;CL:0002076!9.76e-07!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,9.41e-20,6;CL:0000677,9.41e-20,6;CL:0000584,9.41e-20,6;CL:0000075,7.55e-17,7;CL:0002563,5.70e-13,9;CL:0002251,5.70e-13,9;CL:0000682,1.20e-10,3;CL:0000066,2.12e-09,25;CL:0002076,1.57e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.70e-25!43;UBERON:0000344!4.85e-24!15;UBERON:0005409!2.87e-20!59;UBERON:0001242!5.68e-20!13;UBERON:0000060!5.68e-20!13;UBERON:0001262!5.68e-20!13;UBERON:0004786!5.68e-20!13;UBERON:0004923!5.71e-16!24;UBERON:0003350!5.39e-12!9;UBERON:0004808!5.39e-12!9;UBERON:0001277!5.39e-12!9;UBERON:0000485!1.33e-09!11;UBERON:0001007!2.69e-08!128;UBERON:0001555!2.69e-08!128;UBERON:0007026!2.69e-08!128;UBERON:0004119!4.59e-08!130;UBERON:0000925!4.59e-08!130;UBERON:0006595!4.59e-08!130;UBERON:0000331!1.65e-07!3;UBERON:0002116!1.65e-07!3;UBERON:0001204!1.65e-07!3;UBERON:0001168!1.65e-07!3;UBERON:0004921!7.45e-07!126;UBERON:0004185!7.45e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.13e-42,31;UBERON:0000344,1.15e-29,15;UBERON:0005409,2.76e-29,47;UBERON:0001242,5.87e-24,13;UBERON:0001262,5.87e-24,13;UBERON:0004786,5.87e-24,13;UBERON:0004923,1.16e-17,24;UBERON:0003350,5.70e-13,9;UBERON:0004808,5.70e-13,9;UBERON:0001277,5.70e-13,9;UBERON:0002108,7.87e-13,4;UBERON:0001007,1.09e-11,116;UBERON:0001555,1.09e-11,116;UBERON:0007026,1.09e-11,116;UBERON:0004119,2.07e-11,118;UBERON:0000925,2.07e-11,118;UBERON:0006595,2.07e-11,118;UBERON:0000485,1.69e-10,11;UBERON:0000331,4.19e-10,3;UBERON:0002116,4.19e-10,3;UBERON:0001204,4.19e-10,3;UBERON:0001168,4.19e-10,3;UBERON:0004921,1.55e-09,114;UBERON:0001155,1.08e-07,2;UBERON:0000059,1.08e-07,2;UBERON:0001962,1.82e-07,2;UBERON:0001961,1.82e-07,2;UBERON:0001744,1.82e-07,2 | |||
|phase1_expression=0,8.02643437570531,6.82498859084304,9.37639055051173,15.0268718983904,1.84667199103079,3.03696432774183,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0.261199789138935,6.87967418011649,4.12936705920906,5.7423196411502,8.18447792702242,4.30942465371778,7.60093677825496,4.28451220591882,1.33038306393183,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,1.7127581957859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,13.0283098156382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.6152793538613,0,0,0,0,0,0.22237804384487,0,8.54152310780121,1.15289268306808,1.00534083520108,1.79060824837036,1.55971269695296,7.19055526923377,7.99710784536369,5.57595565112228,0,0,0,0,0,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775284879504663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33184669303881,0,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42576470620972,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476293691283074,0,0,0.412085900803307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191288332068843,0,0 | |||
|short_description=p@chr7:16957541..16957570,- | |||
}} |
Revision as of 12:34, 14 September 2013
Short description: | p@chr7:16957541..16957570, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:16957541..16957570, - |
Coexpression cluster: | MCL_coexpression_mm9:74 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 9.41e-20 | 6 |
gut absorptive cell | 9.41e-20 | 6 |
enterocyte | 9.41e-20 | 6 |
columnar/cuboidal epithelial cell | 7.55e-17 | 7 |
intestinal epithelial cell | 5.70e-13 | 9 |
epithelial cell of alimentary canal | 5.70e-13 | 9 |
M cell of gut | 1.20e-10 | 3 |
epithelial cell | 2.12e-09 | 25 |
endo-epithelial cell | 1.57e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.13e-42 | 31 |
mucosa | 1.15e-29 | 15 |
gastrointestinal system | 2.76e-29 | 47 |
intestinal mucosa | 5.87e-24 | 13 |
wall of intestine | 5.87e-24 | 13 |
gastrointestinal system mucosa | 5.87e-24 | 13 |
organ component layer | 1.16e-17 | 24 |
epithelium of mucosa | 5.70e-13 | 9 |
gastrointestinal system epithelium | 5.70e-13 | 9 |
intestinal epithelium | 5.70e-13 | 9 |
small intestine | 7.87e-13 | 4 |
digestive system | 1.09e-11 | 116 |
digestive tract | 1.09e-11 | 116 |
primitive gut | 1.09e-11 | 116 |
endoderm-derived structure | 2.07e-11 | 118 |
endoderm | 2.07e-11 | 118 |
presumptive endoderm | 2.07e-11 | 118 |
simple columnar epithelium | 1.69e-10 | 11 |
ileal mucosa | 4.19e-10 | 3 |
ileum | 4.19e-10 | 3 |
mucosa of small intestine | 4.19e-10 | 3 |
wall of small intestine | 4.19e-10 | 3 |
subdivision of digestive tract | 1.55e-09 | 114 |
colon | 1.08e-07 | 2 |
large intestine | 1.08e-07 | 2 |
gut-associated lymphoid tissue | 1.82e-07 | 2 |
mucosa-associated lymphoid tissue | 1.82e-07 | 2 |
lymphoid tissue | 1.82e-07 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.