FFCP PHASE1:Mm9::chr8:88016374..88016389,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=108682|HGNC=|MCL_coexpression_id=8|UniProt=Q8BGT5|association_with_transcript=-85bp_to_ENSMUST00000034136_5end|description=CAGE_peak_4_at_Gpt2_5end|id=chr8:88016374..88016389,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000182,3.44e-17,5;CL:0002612,8.59e-10,3;CL:0002611,1.08e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002365!1.75e-09!25;UBERON:0002330!1.75e-09!25;UBERON:0002107!8.18e-09!22;UBERON:0007499!8.18e-09!22;UBERON:0006925!8.18e-09!22;UBERON:0009497!8.18e-09!22;UBERON:0000015!8.18e-09!22;UBERON:0002423!8.18e-09!22;UBERON:0006235!8.18e-09!22;UBERON:0008835!8.18e-09!22;UBERON:0003894!8.18e-09!22;UBERON:0004161!8.18e-09!22;UBERON:0008836!8.18e-09!22;UBERON:0004121!1.58e-08!102;UBERON:0000924!1.58e-08!102;UBERON:0006601!1.58e-08!102;UBERON:0009854!3.65e-08!23;UBERON:0009856!3.65e-08!23;UBERON:0004111!1.28e-07!122;UBERON:0000073!5.94e-07!75;UBERON:0001016!5.94e-07!75;UBERON:0005256!7.48e-07!47|ontology_enrichment_uberon_v019_2=UBERON:0001948,7.69e-16,5;UBERON:0002315,7.69e-16,5;UBERON:0002240,3.64e-13,6;UBERON:0005174,3.64e-13,6;UBERON:0001137,3.64e-13,6;UBERON:0002107,2.48e-11,22;UBERON:0007499,2.48e-11,22;UBERON:0006925,2.48e-11,22;UBERON:0009497,2.48e-11,22;UBERON:0000015,2.48e-11,22;UBERON:0002423,2.48e-11,22;UBERON:0006235,2.48e-11,22;UBERON:0008835,2.48e-11,22;UBERON:0003894,2.48e-11,22;UBERON:0004161,2.48e-11,22;UBERON:0008836,2.48e-11,22;UBERON:0009854,9.04e-11,23;UBERON:0009856,9.04e-11,23;UBERON:0002257,8.59e-10,3;UBERON:0002365,8.81e-10,25;UBERON:0002330,8.81e-10,25;UBERON:0003076,5.37e-09,12;UBERON:0003057,5.37e-09,12;UBERON:0005256,1.75e-08,45;UBERON:0002256,1.08e-07,2;UBERON:0010147,6.25e-07,2;UBERON:0003937,6.25e-07,2;UBERON:0005399,6.25e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0.61506478758457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.388859798148567,0,0,0,0,0,0,0,0,0.202316460859598,1.05798195854407,0,0,0,0,0,0,0,0,0.103689612308478,0,0,3.99911378165325,3.09215957332259,0.122490799214954,0.191690942036473,0,0,0.127687338085188,0.307213066512487,0.131886287730194,0,0,0.279182999001381,0,0.30559649555362,2.65165726926301,1.28134512719193,1.3047961207771,0.075726193333184,0.0755715601067855,1.15945795480671,5.16254326188832,8.83962733820076,4.85732872474035,12.3457519315057,14.7848872742121,1.82577746171277,0,0,0,0.14084341977668,0,0,0,0,0,0,3.4255163915718,0,0.445326417194474,0,0.304465478312141,0,0,0.23517741427141,2.26199864393416,3.21353458054686,0,0,0,0,0,0,0.585561594023094,0,0,0,0,0,0.299581278809645,0,0.251308704225729,0.347648640384553,1.27857728665165,0.20778804455956,0.648965052271031,0,0.373220911830279,0.505445516867349,0,0,0,0.180062129805349,0,0,0,0.0937017245597288,0,0.431135985865684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0.268412837520744,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0.189667900953082,0,0,0,0,0,0.0632365371242573,0,0.156998727841375,0.123397163921801,7.70776830426587,0,0.196558995113203,0,0.202860121388503,0.241177159752417,0.50925170356284,0.575392274901621,0.648540907100142,0.274561413188081,0,0,0,0.252578877947112,3.22915344339442,10.1313139486307,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0.983528546038072,0.827810238914197,0.481651769963376,1.40654023910644,0.163934945376675,0.504941854408746,0.315508219416257,0,0,0,0.222798674082394,0.283076530788832,0,0.292255857911312,0,3.21321316421807,0,0,0.162886959353576,0.164970122972535,1.32745138339963,0,0,0,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0.340439605753788,0,0,0.214337035031592,0,0,0,0,0.469343416127421,0,2.20528398054962,0,0,0.120625849856312,0.119372344003136,0.820704498725306,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0.0826534557253359,0.26175594198403,0,0,1.69107881605257,0,0,0,0,0.168956125490778,0.117357238645754,0,0.104859344425711,0.241584120826006,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0.428736758158132,1.00314420807073,1.6942555278512,0.460325236507177,2.29158205375759,0.515559547031063,0,0,0,0.45032120322422,0,0.51776031175182,0,0,0.170733605754134,0,0,0.183843508450014,0.222246727801615,0,0.64183841918363,0,0.25347929989024,0,0.0936415074698824,0.192075457214608,0.0574354689556133,0,0.231768651889711,0,0,0.147198920134397,0,0,0.238436189947321,0,0.282328141245992,0.0846146078916765,0,0.263069711437843,0,0.561142271657738,0.118635018124174,0.197008964751127,0,0.309873682371932,0,0,0,0,0,0,0|short_description=p4@Gpt2}} | ||
|EntrezGene=108682 | |||
|HGNC= | |||
|MCL_coexpression_id=8 | |||
|UniProt=Q8BGT5 | |||
|association_with_transcript=-85bp_to_ENSMUST00000034136_5end | |||
|description=CAGE_peak_4_at_Gpt2_5end | |||
|id=chr8:88016374..88016389,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.44e-17,5;CL:0002612,8.59e-10,3;CL:0002611,1.08e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002365!1.75e-09!25;UBERON:0002330!1.75e-09!25;UBERON:0002107!8.18e-09!22;UBERON:0007499!8.18e-09!22;UBERON:0006925!8.18e-09!22;UBERON:0009497!8.18e-09!22;UBERON:0000015!8.18e-09!22;UBERON:0002423!8.18e-09!22;UBERON:0006235!8.18e-09!22;UBERON:0008835!8.18e-09!22;UBERON:0003894!8.18e-09!22;UBERON:0004161!8.18e-09!22;UBERON:0008836!8.18e-09!22;UBERON:0004121!1.58e-08!102;UBERON:0000924!1.58e-08!102;UBERON:0006601!1.58e-08!102;UBERON:0009854!3.65e-08!23;UBERON:0009856!3.65e-08!23;UBERON:0004111!1.28e-07!122;UBERON:0000073!5.94e-07!75;UBERON:0001016!5.94e-07!75;UBERON:0005256!7.48e-07!47 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,7.69e-16,5;UBERON:0002315,7.69e-16,5;UBERON:0002240,3.64e-13,6;UBERON:0005174,3.64e-13,6;UBERON:0001137,3.64e-13,6;UBERON:0002107,2.48e-11,22;UBERON:0007499,2.48e-11,22;UBERON:0006925,2.48e-11,22;UBERON:0009497,2.48e-11,22;UBERON:0000015,2.48e-11,22;UBERON:0002423,2.48e-11,22;UBERON:0006235,2.48e-11,22;UBERON:0008835,2.48e-11,22;UBERON:0003894,2.48e-11,22;UBERON:0004161,2.48e-11,22;UBERON:0008836,2.48e-11,22;UBERON:0009854,9.04e-11,23;UBERON:0009856,9.04e-11,23;UBERON:0002257,8.59e-10,3;UBERON:0002365,8.81e-10,25;UBERON:0002330,8.81e-10,25;UBERON:0003076,5.37e-09,12;UBERON:0003057,5.37e-09,12;UBERON:0005256,1.75e-08,45;UBERON:0002256,1.08e-07,2;UBERON:0010147,6.25e-07,2;UBERON:0003937,6.25e-07,2;UBERON:0005399,6.25e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0.61506478758457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.388859798148567,0,0,0,0,0,0,0,0,0.202316460859598,1.05798195854407,0,0,0,0,0,0,0,0,0.103689612308478,0,0,3.99911378165325,3.09215957332259,0.122490799214954,0.191690942036473,0,0,0.127687338085188,0.307213066512487,0.131886287730194,0,0,0.279182999001381,0,0.30559649555362,2.65165726926301,1.28134512719193,1.3047961207771,0.075726193333184,0.0755715601067855,1.15945795480671,5.16254326188832,8.83962733820076,4.85732872474035,12.3457519315057,14.7848872742121,1.82577746171277,0,0,0,0.14084341977668,0,0,0,0,0,0,3.4255163915718,0,0.445326417194474,0,0.304465478312141,0,0,0.23517741427141,2.26199864393416,3.21353458054686,0,0,0,0,0,0,0.585561594023094,0,0,0,0,0,0.299581278809645,0,0.251308704225729,0.347648640384553,1.27857728665165,0.20778804455956,0.648965052271031,0,0.373220911830279,0.505445516867349,0,0,0,0.180062129805349,0,0,0,0.0937017245597288,0,0.431135985865684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0.268412837520744,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0.189667900953082,0,0,0,0,0,0.0632365371242573,0,0.156998727841375,0.123397163921801,7.70776830426587,0,0.196558995113203,0,0.202860121388503,0.241177159752417,0.50925170356284,0.575392274901621,0.648540907100142,0.274561413188081,0,0,0,0.252578877947112,3.22915344339442,10.1313139486307,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0.983528546038072,0.827810238914197,0.481651769963376,1.40654023910644,0.163934945376675,0.504941854408746,0.315508219416257,0,0,0,0.222798674082394,0.283076530788832,0,0.292255857911312,0,3.21321316421807,0,0,0.162886959353576,0.164970122972535,1.32745138339963,0,0,0,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0.340439605753788,0,0,0.214337035031592,0,0,0,0,0.469343416127421,0,2.20528398054962,0,0,0.120625849856312,0.119372344003136,0.820704498725306,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0.0826534557253359,0.26175594198403,0,0,1.69107881605257,0,0,0,0,0.168956125490778,0.117357238645754,0,0.104859344425711,0.241584120826006,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0.428736758158132,1.00314420807073,1.6942555278512,0.460325236507177,2.29158205375759,0.515559547031063,0,0,0,0.45032120322422,0,0.51776031175182,0,0,0.170733605754134,0,0,0.183843508450014,0.222246727801615,0,0.64183841918363,0,0.25347929989024,0,0.0936415074698824,0.192075457214608,0.0574354689556133,0,0.231768651889711,0,0,0.147198920134397,0,0,0.238436189947321,0,0.282328141245992,0.0846146078916765,0,0.263069711437843,0,0.561142271657738,0.118635018124174,0.197008964751127,0,0.309873682371932,0,0,0,0,0,0,0 | |||
|short_description=p4@Gpt2 | |||
}} |
Revision as of 16:21, 14 September 2013
Short description: | p4@Gpt2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Gpt2_5end |
Coexpression cluster: | MCL_coexpression_mm9:8 |
Association with transcript: | -85bp_to_ENSMUST00000034136_5end |
EntrezGene: | Gpt2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.44e-17 | 5 |
neuron of the ventral spinal cord | 8.59e-10 | 3 |
neuron of the dorsal spinal cord | 1.08e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 7.69e-16 | 5 |
gray matter of spinal cord | 7.69e-16 | 5 |
spinal cord | 3.64e-13 | 6 |
dorsal region element | 3.64e-13 | 6 |
dorsum | 3.64e-13 | 6 |
liver | 2.48e-11 | 22 |
epithelial sac | 2.48e-11 | 22 |
digestive gland | 2.48e-11 | 22 |
epithelium of foregut-midgut junction | 2.48e-11 | 22 |
anatomical boundary | 2.48e-11 | 22 |
hepatobiliary system | 2.48e-11 | 22 |
foregut-midgut junction | 2.48e-11 | 22 |
hepatic diverticulum | 2.48e-11 | 22 |
liver primordium | 2.48e-11 | 22 |
septum transversum | 2.48e-11 | 22 |
liver bud | 2.48e-11 | 22 |
digestive tract diverticulum | 9.04e-11 | 23 |
sac | 9.04e-11 | 23 |
ventral horn of spinal cord | 8.59e-10 | 3 |
exocrine gland | 8.81e-10 | 25 |
exocrine system | 8.81e-10 | 25 |
posterior neural tube | 5.37e-09 | 12 |
chordal neural plate | 5.37e-09 | 12 |
trunk mesenchyme | 1.75e-08 | 45 |
dorsal horn of spinal cord | 1.08e-07 | 2 |
male accessory sex gland | 6.25e-07 | 2 |
sex gland | 6.25e-07 | 2 |
male reproductive gland | 6.25e-07 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.