FFCP PHASE1:Hg19::chr10:13390270..13390316,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22929 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19685 | |||
|TSSclassifier=strong | |||
|UniProt=P49903,Q5T5U9,D6PSQ9,B4DWK0,D3DRS9 | |||
|association_with_transcript=0bp_to_ENST00000327347,ENST00000378614,ENST00000545675,NM_001195602,NM_001195604,NM_012247,uc001imk.2,uc009xje.2,uc010qbt.1_5end | |||
|description=CAGE_peak_2_at_SEPHS1_5end | |||
|id=chr10:13390270..13390316,- | |||
|ontology_enrichment_celltype=CL:0000066!2.36e-23!254;CL:0000548!3.78e-11!679;CL:0000004!3.78e-11!679;CL:0000255!3.78e-11!679;CL:0002321!4.00e-11!248;CL:0000012!4.66e-11!682;CL:0000220!1.93e-10!246 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.88e-23,253;CL:0002321,3.09e-11,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.21e-32!235;DOID:14566!8.74e-31!239;DOID:0050687!1.51e-19!143;DOID:305!1.19e-16!106;DOID:0050686!9.23e-13!137;DOID:2531!1.17e-12!51;DOID:0060083!1.17e-12!51;DOID:1240!1.74e-08!39;DOID:3095!1.49e-07!22;DOID:2994!1.49e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:2531;1.18e-07;51!DOID:0060083;1.18e-07;51!DOID:3095;3.02e-07;22!DOID:2994;3.02e-07;22!DOID:1240;3.85e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:162,6.92e-32,235;DOID:14566,1.52e-30,239;DOID:0050687,2.91e-19,143;DOID:305,1.89e-16,106;DOID:2531,1.00e-12,51;DOID:0060083,1.00e-12,51;DOID:0050686,1.99e-12,137;DOID:1240,1.58e-08,39;DOID:3095,1.37e-07,22;DOID:2994,1.37e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0005172!3.24e-08!55;UBERON:0005173!3.24e-08!55;UBERON:0003104!6.20e-08!238;UBERON:0009142!6.20e-08!238;UBERON:0005177!9.33e-08!107;UBERON:0004119!1.03e-07!169;UBERON:0000925!1.03e-07!169;UBERON:0006595!1.03e-07!169;UBERON:0001007!1.62e-07!155;UBERON:0001555!1.62e-07!155;UBERON:0007026!1.62e-07!155;UBERON:0009569!3.96e-07!113;UBERON:0002417!5.89e-07!61;UBERON:0000916!5.89e-07!61;UBERON:0000077!9.76e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;2.33e-07;24!UBERON:0011143;2.33e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,4.81e-09,101;UBERON:0005172,2.41e-08,54;UBERON:0005173,2.41e-08,54;UBERON:0004119,8.35e-08,160;UBERON:0000925,8.35e-08,160;UBERON:0006595,8.35e-08,160;UBERON:0001007,1.20e-07,145;UBERON:0001555,1.20e-07,145;UBERON:0007026,1.20e-07,145;UBERON:0009569,1.70e-07,112;UBERON:0002417,4.74e-07,60;UBERON:0000916,4.74e-07,60 | |||
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| |||
|short_description=p2@SEPHS1 | |||
}} |
Revision as of 01:47, 11 January 2014
Short description: | p2@SEPHS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SEPHS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000327347, ENST00000378614, ENST00000545675, NM_001195602, NM_001195604, NM_012247, uc001imk.2, uc009xje.2, uc010qbt.1_5end |
EntrezGene: | SEPHS1 |
HGNC: | 19685 |
UniProt: | P49903Q5T5U9D6PSQ9B4DWK0D3DRS9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.88e-23 | 253 |
embryonic cell | 3.09e-11 | 250 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 4.81e-09 | 101 |
abdomen element | 2.41e-08 | 54 |
abdominal segment element | 2.41e-08 | 54 |
endoderm-derived structure | 8.35e-08 | 160 |
endoderm | 8.35e-08 | 160 |
presumptive endoderm | 8.35e-08 | 160 |
digestive system | 1.20e-07 | 145 |
digestive tract | 1.20e-07 | 145 |
primitive gut | 1.20e-07 | 145 |
subdivision of trunk | 1.70e-07 | 112 |
abdominal segment of trunk | 4.74e-07 | 60 |
abdomen | 4.74e-07 | 60 |
Ontology term | p-value | n |
---|---|---|
cancer | 6.92e-32 | 235 |
disease of cellular proliferation | 1.52e-30 | 239 |
cell type cancer | 2.91e-19 | 143 |
carcinoma | 1.89e-16 | 106 |
hematologic cancer | 1.00e-12 | 51 |
immune system cancer | 1.00e-12 | 51 |
organ system cancer | 1.99e-12 | 137 |
leukemia | 1.58e-08 | 39 |
germ cell and embryonal cancer | 1.37e-07 | 22 |
germ cell cancer | 1.37e-07 | 22 |