FFCP PHASE1:Hg19::chr15:32976571..32976607,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6447 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10816 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-9bp_to_ENST00000498607_5end | |||
|coexpression_cluster_id=C2329 | |||
|description=CAGE_peak_3_at_SCG5_5end | |||
|id=chr15:32976571..32976607,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.45e-22!180;CL:0002371!1.35e-13!591;CL:0000057!1.39e-13!75;CL:0000144!5.24e-13!625;CL:0000548!1.85e-12!679;CL:0000004!1.85e-12!679;CL:0000255!1.85e-12!679;CL:0000012!4.92e-12!682;CL:0002620!6.71e-11!23;CL:0000359!1.53e-10!32;CL:0000723!2.06e-08!436;CL:0002334!3.88e-08!12;CL:0000192!5.14e-08!42;CL:0000514!5.14e-08!42;CL:0000220!5.67e-08!246;CL:0000680!6.46e-08!57;CL:0000056!6.46e-08!57;CL:0000355!6.46e-08!57;CL:0000003!8.50e-08!722;CL:0002321!1.10e-07!248;CL:0000034!1.10e-07!444;CL:0000048!1.14e-07!430;CL:0002539!1.68e-07!10;CL:0000187!6.93e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.88e-12;23!CL:0002539;3.56e-11;10!CL:0002334;4.07e-10;12!CL:0000359;1.18e-09;32!CL:0002159;9.60e-08;14!CL:0002570;8.33e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.85e-15,76;CL:0002620,4.93e-12,23;CL:0002539,3.78e-11,10;CL:0002334,3.98e-10,12;CL:0000359,4.18e-10,32;CL:0000723,3.53e-09,433;CL:0000034,1.62e-08,441;CL:0000048,2.45e-08,427;CL:0002159,7.53e-08,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.93e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.54e-10;14!DOID:17;3.19e-07;5!DOID:450;3.19e-07;5!DOID:66;3.19e-07;5!DOID:423;3.19e-07;5!DOID:0080000;3.19e-07;5!DOID:11722;3.19e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.57e-10,14;DOID:17,3.37e-07,5;DOID:450,3.37e-07,5;DOID:66,3.37e-07,5;DOID:423,3.37e-07,5;DOID:0080000,3.37e-07,5;DOID:11722,3.37e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002097!1.40e-14!40;UBERON:0002199!1.77e-14!45;UBERON:0002416!1.77e-14!45;UBERON:0000486!2.46e-11!82;UBERON:0000914!4.37e-10!83;UBERON:0002329!4.37e-10!83;UBERON:0003077!4.37e-10!83;UBERON:0003059!4.37e-10!83;UBERON:0007282!4.37e-10!83;UBERON:0009618!4.37e-10!83;UBERON:0007285!4.37e-10!83;UBERON:0003102!4.07e-09!95;UBERON:0004290!5.82e-09!70;UBERON:0001637!1.92e-08!42;UBERON:0003509!1.92e-08!42;UBERON:0004572!1.92e-08!42;UBERON:0004237!1.68e-07!10;UBERON:0004695!1.68e-07!10;UBERON:0002111!1.68e-07!10;UBERON:0004178!1.68e-07!10;UBERON:0004573!1.98e-07!33;UBERON:0004571!1.98e-07!33;UBERON:0001134!3.09e-07!61;UBERON:0002036!3.09e-07!61;UBERON:0003082!3.09e-07!61;UBERON:0001981!5.79e-07!60;UBERON:0007500!5.79e-07!60;UBERON:0004537!5.79e-07!60;UBERON:0006965!5.79e-07!60;UBERON:0004872!6.30e-07!84;UBERON:0005256!7.38e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;3.79e-13;41!UBERON:0004237;3.56e-11;10!UBERON:0004695;3.56e-11;10!UBERON:0002111;3.56e-11;10!UBERON:0004178;3.56e-11;10!UBERON:0002199;3.70e-11;46!UBERON:0002416;3.70e-11;46!UBERON:0003102;1.78e-08;50!UBERON:0004573;8.85e-08;33!UBERON:0004571;8.85e-08;33!UBERON:0000947;3.09e-07;21!UBERON:0010191;3.09e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,8.20e-17,41;UBERON:0002199,1.37e-16,46;UBERON:0002416,1.37e-16,46;UBERON:0004237,3.78e-11,10;UBERON:0004695,3.78e-11,10;UBERON:0002111,3.78e-11,10;UBERON:0004178,3.78e-11,10;UBERON:0003102,4.02e-10,99;UBERON:0001637,4.72e-10,42;UBERON:0003509,4.72e-10,42;UBERON:0004572,4.72e-10,42;UBERON:0004573,1.51e-08,33;UBERON:0004571,1.51e-08,33;UBERON:0000947,3.56e-07,21;UBERON:0010191,3.56e-07,21 | |||
|phase1_expression=2.54349730978779,2.5692062866918,0.704772020479856,1.0007329835313,0.446961094427288,1.74467704820074,0,0,0.261185628199839,0,0,0,0,0,0,40.3395087871065,37.9697552655105,48.2004659655666,41.4742878971931,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0.822335776043652,1.85823822537062,0,0.256160706529101,0,0,0.645484683583826,0,0.188242339542605,0.272906150057846,0.224723484445085,0,0.320929027076094,0,0,0,0,0.290209238628584,0,0,0,0.521482918420201,0.217188844705117,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,1.00267582127178,0.434539556882471,18.2915767821753,6.32625331393427,0.0945348171640679,0,0.175669571386252,0.0654895377488563,0,0,0.649094787309367,0,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0.760272105718513,0.24406205754817,0,0,0,0,0,0,0,0.183201743930407,0,0,0,2.98183171017191,3.16576279161449,18.0076485905978,1.14734648299525,0.354668382198357,0.560677600142307,6.4049397437823,24.666754841716,0.311211035399766,0.942974704487816,0,0,0,0,0,0.570471821544449,0.149448680551801,0.704606991862589,1.13311061057692,0.280901613404497,0,0,0.413303124703062,0,0.494533858557114,0,0,0.168336113954066,0,0,1.31693286264251,1.5324389789951,1.50238058906597,1.47461838108027,10.0458195985763,11.3185416073841,12.080118366095,6.60200411385685,7.4197821051676,5.41045134095821,8.74749224758472,2.86919764810153,3.21542117031955,3.02920529092937,7.54809168866855,1.61646056818812,5.32514388774922,7.55640736707302,3.22165125389926,21.4519547011259,17.4557517178134,6.02289650316908,0,0,0,0.10366105501537,0,0,1.56449532329816,0.643240938192885,2.76269842704961,3.71494342425583,2.88751792667834,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.343135620597051,6.69476740992616,4.49607013030478,12.9682374411004,0.370353780634118,0,0,0,0.115930404975077,0.117408694235822,0.433099343283221,0,0,0,0,0.984868024349589,24.1024393093415,11.5932306585208,10.3107217385455,7.8951600253464,15.3117105021777,1.70161193135412,0,0.383382679165211,0,0,0,0,0,0.380987365753014,0,0,1.71072446022705,0.102827492703324,0,0,0.224262168690721,0,0.2933531432838,4.00742318849111,0,3.381211010224,1.59562869950922,0,0,0,0,0.428933980974443,0,0,5.21177894869976,0,0,0.602878754119172,11.3299349618038,0.199945982364114,1.2162378064119,0,2.10833939483032,0.958499421966331,0,0,2.89562613335158,0.61642896765115,3.40215830155802,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0.623912584592421,0.356857977594324,0,0.117141414992713,0.902838299183157,0,3.10419213877515,0,0.553107505625109,0.434418072340414,0,0,0,0,0,0,0,0.30239029332968,17.6156543551332,4.29693525206575,7.01650236082684,2.56278298511402,2.55853624533352,2.57366273829772,7.42090332224955,3.85524234506639,3.37367278094941,0.739144404124282,2.07701771673448,1.62694529843943,0,0.601519410909855,1.38121483403844,0.114814448164607,0.182091168006717,0,0.902399225814824,0.616122696835318,0,0,1.05551628892876,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.3566384499043,3.90036147621913,0,0.096670718292122,0,0,1.24052915236078,0.214840489736547,0.435050081742686,0.255679882248303,0,4.95854746082934,4.61256161676255,4.72167036229961,1.92199783625545,25.1016596620534,14.4813679542094,9.0614845120878,0,3.19383618190213,11.3091288969759,10.3781562698195,2.14687330112987,0,0,0,0.255897791311334,0.42793898803392,0.318203247925937,7.06453776179307,0,0.274537029736055,0.235624804691373,2.62837226045311,0,2.10629228119491,0,0.487426979262569,0,0.136499911407986,0,1.13008116620243,0.551365343546124,0.66343897524122,2.63070531152258,0,0,12.1746226177622,1.54911749049875,0.281695602532241,0.717056761020258,0.294747123039363,8.56010523555001,0,0.422215270595328,4.93942339439853,0,0,2.59799704358883,0.670302275535787,1.08890984861323,0.282431402330337,0,1.68471475667626,0,11.0267232099341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423347165447766,0,0,0,0,0,2.03150133361924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0,0,0,0,0,0,0.994147647766298,0.281338832821026,60.6632442374837,0.16480387422676,0,0,0,0,5.11343412510774,0,6.22079175323615,7.18946809178615,0,0,0,0,73.3504134954603,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,117.816085745799,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24807205711825,0,0,0.435296032902013,0,0,0,0,0,0,0,0,49.6091767221238,26.2303287447946,0.0633107959558787,0,93.7056608740429,0,0,0,0,0,0.720273989940749,0,0,0.407712618220842,0.418411385249333,9.58783245781425,10.4022212364547,0,0,0,1.28929632425987,0,0,0,0,0,0,0,0,19.8164935948322,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.425246896606173,0,0,0,0.422401346077626,0,0.383830394638891,0,0,0,0,1.72844298240254,0.326587360109409,3.591905746874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| |||
|short_description=p3@SCG5 | |||
}} |
Revision as of 22:39, 11 January 2014
Short description: | p3@SCG5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SCG5_5end |
Coexpression cluster: | C2329_cholangiocellular_gall_pagetoid_mesenchymal_bone_Macrophage_Aortic |
Association with transcript: | -9bp_to_ENST00000498607_5end |
EntrezGene: | SCG5 |
HGNC: | 10816 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.85e-15 | 76 |
skin fibroblast | 4.93e-12 | 23 |
aortic smooth muscle cell | 3.78e-11 | 10 |
preadipocyte | 3.98e-10 | 12 |
vascular associated smooth muscle cell | 4.18e-10 | 32 |
somatic stem cell | 3.53e-09 | 433 |
stem cell | 1.62e-08 | 441 |
multi fate stem cell | 2.45e-08 | 427 |
general ecto-epithelial cell | 7.53e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
skin of body | 8.20e-17 | 41 |
integument | 1.37e-16 | 46 |
integumental system | 1.37e-16 | 46 |
blood vessel smooth muscle | 3.78e-11 | 10 |
arterial system smooth muscle | 3.78e-11 | 10 |
artery smooth muscle tissue | 3.78e-11 | 10 |
aorta smooth muscle tissue | 3.78e-11 | 10 |
surface structure | 4.02e-10 | 99 |
artery | 4.72e-10 | 42 |
arterial blood vessel | 4.72e-10 | 42 |
arterial system | 4.72e-10 | 42 |
systemic artery | 1.51e-08 | 33 |
systemic arterial system | 1.51e-08 | 33 |
aorta | 3.56e-07 | 21 |
aortic system | 3.56e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.57e-10 | 14 |
musculoskeletal system disease | 3.37e-07 | 5 |
myotonic disease | 3.37e-07 | 5 |
muscle tissue disease | 3.37e-07 | 5 |
myopathy | 3.37e-07 | 5 |
muscular disease | 3.37e-07 | 5 |
myotonic dystrophy | 3.37e-07 | 5 |