FFCP PHASE1:Hg19::chr18:6729725..6729749,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79822 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25509 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-71bp_to_ENST00000400091_5end | |||
|coexpression_cluster_id=C3738 | |||
|description=CAGE_peak_3_at_ARHGAP28_5end | |||
|id=chr18:6729725..6729749,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002564;7.69e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,7.45e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!1.22e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;5.96e-12;8!UBERON:0000982;5.96e-12;8!UBERON:0004770;5.96e-12;8!UBERON:0011135;1.60e-10;5!UBERON:0002216;1.60e-10;5!UBERON:0011134;1.60e-10;5!UBERON:0002209;1.60e-10;5!UBERON:0002213;1.60e-10;5!UBERON:0007844;1.60e-10;5!UBERON:0011138;1.60e-10;5!UBERON:0001130;1.60e-10;5!UBERON:0001066;1.60e-10;5!UBERON:0001468;1.60e-10;5!UBERON:0000160;9.42e-09;17!UBERON:0000922;1.19e-08;49!UBERON:0005409;8.99e-08;22!UBERON:0002242;7.69e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,5.19e-12,8;UBERON:0000982,5.19e-12,8;UBERON:0004770,5.19e-12,8;UBERON:0011135,1.49e-10,5;UBERON:0002216,1.49e-10,5;UBERON:0011134,1.49e-10,5;UBERON:0002209,1.49e-10,5;UBERON:0002213,1.49e-10,5;UBERON:0005856,1.49e-10,5;UBERON:0005866,1.49e-10,5;UBERON:0005863,1.49e-10,5;UBERON:0007844,1.49e-10,5;UBERON:0011138,1.49e-10,5;UBERON:0001130,1.49e-10,5;UBERON:0001066,1.49e-10,5;UBERON:0001468,1.49e-10,5;UBERON:0005409,1.69e-09,25;UBERON:0000160,9.98e-09,17;UBERON:0002242,7.45e-07,3;UBERON:0003068,7.45e-07,3;UBERON:0002328,7.45e-07,3;UBERON:0004880,7.45e-07,3;UBERON:0011216,7.97e-07,223 | |||
|phase1_expression=0.363356758541113,0.214100523890983,1.26858963686374,0,0.893922188854576,0.872338524100369,0,0.631719873426831,0.783556884599516,0,0,0.436882744260345,0,5.94078494208224,6.62794751455832,0,0,0,0,0,0.204000691244253,0.626909442956176,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,0,0,0.144846518960824,0,0,0.378139268656271,0,0.087834785693126,0.72038491523742,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,1.10047216776027,0,0,0.35576626268671,0,0.805658634218294,0,0,0.367663080345869,0.81014194788176,1.16089646769304,1.34717623575702,0.788280363383256,1.53316637465883,0,1.46561395144326,0,0,0,0.496971951695318,0,0.397227542439656,0.286836620748814,0,1.12135520028461,0,0,2.48968828319813,0.134710672069688,0.163461903113459,1.36221684880438,7.49028701823999,0.468642863667593,0,0,0,0.23486899728753,0.485618833104395,0.561803226808994,1.42907919878425,0.737005903870608,1.34323515528495,0,0.247266929278557,0,0,1.5150250255866,0.750711119231785,0,0,0,0.600952235626387,0,0,0.213557388818567,0,0,0,0,0,0.168776332241266,0,0,0.644349290496095,1.61646056818812,0,0,0,0,0,0,0.487894824518382,0.662648841607426,1.2781333715647,1.0366105501537,1.7662459561294,1.45990943630332,0,1.28648187638577,0,0,0,0.709840800239063,0.674338760312407,0,0.661763836394364,0.217879444092406,0.71181185733329,0.674156540800822,0.784885860501384,0.38474715694639,0,1.40241773803446,0.4115740113314,0,0,0,0,0,6.3953988042419,0,0.219500570817251,0,0,0,0.651616610620649,0,0,0.231860809950154,0.352226082707465,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0.102827492703324,0,0,0.224262168690721,0,0.2933531432838,0,3.57656445851882,0,0,0,0,0,0.266422179016099,1.71573592389777,0,0,0,0.710783897485092,0,0.301439377059586,0,0.099972991182057,0,0,0,0.239624855491583,1.14861935834114,1.42636905040718,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,1.30139853857622,0,0.670065061337395,0.637938751653163,0,0,0,4.66227668532732,3.00102312635806,3.7977103317963,0.207970861530807,0.178428988797162,0,0,2.70851489754947,2.27407504055985,0,0,0.921845842708516,1.04260337361699,1.76221041716467,1.02943027143257,0,0,0,0,0,0.30239029332968,0.496215615637554,1.07423381301644,0.561320188866147,0.640695746278505,0,0,0,0.154209693802656,0.355123450626254,0.657017248110473,0,0,6.5264102779476,0,0.0920809889358963,0.803701137152247,0.728364672026868,1.31124414959424,0,0.0770153371044148,0,0,0,0,0,0.863663664408557,0,0,0,0,0,0,0,0,0,0,0.650756789328606,0.824328093181778,0.915694648183434,0.82509499920588,0,0,0,0.773365746336976,0.308097234229289,0.15350367472613,0,0.644521469209642,1.0151168573996,0.511359764496605,2.04773681987496,0,0,0,0,0,0,0,0,0,0,0,0,5.21021717103534,0,0.38126038784765,0,4.2793898803392,0,0,2.15846949099978,0.823611089208164,1.06031162111118,0,0,0,0,0,0,1.36499911407986,0.141405431953713,0,0,0,0,0.578775534266688,4.59126326432643,0,0.30982349809975,0,0,0.0982490410131212,0,0.354761064070598,0,2.63435914367922,0.75894634753143,2.79947776195986,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88743956579008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0.121360521749513,0.445773537109913,0,0.23874448473769,1.18785872333055,0,0,0,0.222617410045812,0,0,0.19924798825107,1.38141957765574,0,0,0,0,0,0,0,0.493217028184668,0,0,0,0.185536196323703,0,0,0,0.724999575434793,0,0,0.709163045303809,1.03423011972439,0,0,0,0.120596438625408,0,0,0.295547618953547,0,0,0.139423744278603,1.38510465306835,0.227884111694002,0.46112780877612,1.16684937732704,0,0,0,0,0,0,0,0,0.392125068635479,0,0.189753732724185,0,0,0,9.47065578607404,0,0,0.353830258013357,0,0,0,0,0.067401132980677,1.60515529459758,0.234264445725339,0,0.391329237864179,0,0.394584402849391,1.20990716048664,1.53036380815245,1.70603764996917,0.60129367765797,0.933193722575224,0,0,0,0,0,0.138674673013139,0,0,0,0.698906672968121,0,0,0.0730893170861856,0.0821154570532092,0.0969890164884194,0,0.451961481561065,0.137041924646751,0,0.0633107959558787,0.782205530939212,0,0.85381197895741,0,0,0,0,0,0,0,1.9026588850306,1.77824838730966,1.12198039399954,2.88950589901519,0,0,0,0,0,0.558564802544508,0.229160424011684,0,0.599037001496973,0,0,0.403100834920358,0,0,0,0,0,0,0,0,0,0.964518890790115,0.962776056180637,0.415440338029185,0,0,0.242998226632099,0,0.236417121897595,1.83591058472493,0.422401346077626,0,0,0.714695326373367,0,11.187815656809,0,0,0,1.19730191562487,0,0.511164065356265,0.79318464064088,0,0,0.129282956361551,0,0,0,0.961086713109252,6.75978511928564,1.24271716604159,0.992332043623902,0,0,0,1.63205341010842,2.2562090462043,0.306345576763462,0.327872630709804,0,1.77213635993397,0.122026264901963,0,0,0.110929051536852,0.124192805882767,20.0605520657535,0.249960815924213,0,0,0,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| |||
|short_description=p3@ARHGAP28 | |||
}} |
Revision as of 18:28, 20 January 2014
Short description: | p3@ARHGAP28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARHGAP28_5end |
Coexpression cluster: | C3738_medulloblastoma_leiomyoblastoma_normal_tridermal_colon_synovial_rhabdomyosarcoma |
Association with transcript: | -71bp_to_ENST00000400091_5end |
EntrezGene: | ARHGAP28 |
HGNC: | 25509 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 7.45e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
articulation | 5.19e-12 | 8 |
skeletal joint | 5.19e-12 | 8 |
articular system | 5.19e-12 | 8 |
intervertebral cartilage | 1.49e-10 | 5 |
symphysis | 1.49e-10 | 5 |
nonsynovial joint | 1.49e-10 | 5 |
fibrous joint | 1.49e-10 | 5 |
cartilaginous joint | 1.49e-10 | 5 |
developing mesenchymal condensation | 1.49e-10 | 5 |
pre-cartilage condensation | 1.49e-10 | 5 |
cartilaginous condensation | 1.49e-10 | 5 |
cartilage element | 1.49e-10 | 5 |
post-cranial axial skeletal system | 1.49e-10 | 5 |
vertebral column | 1.49e-10 | 5 |
intervertebral disk | 1.49e-10 | 5 |
intervertebral joint | 1.49e-10 | 5 |
gastrointestinal system | 1.69e-09 | 25 |
intestine | 9.98e-09 | 17 |
nucleus pulposus | 7.45e-07 | 3 |
axial mesoderm | 7.45e-07 | 3 |
notochord | 7.45e-07 | 3 |
chordamesoderm | 7.45e-07 | 3 |
organ system subdivision | 7.97e-07 | 223 |